Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001189

Physical Location & Seq

Genomic Coordinates Reverse (-)

35310635 .. 35315705

Gene Structure 5071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1298200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGACTCCTATGAAGCTACAAGAATTGTGTTCTCGAGGATCCAAAATTTGGACCCAGAAAATGCTTCAAAAATCATGGGTCTGCTTCTGATACAAGACCATGGCGAGAAGGAAATGATAAGGCTAGCTTTTGGACCTGAAGCTTTTCTCCACTCGGTCATTCTCAAGTCAAGGAAGGAGCTGGGAGTGTCCCTATCATCAAACTCTCCTTCCTCTCCTTCCACTCCTTCTTCTCCTTCCCCCTTCACAAACCCCATCGCTATCTCCAGGCAGAACTCTTGCTCTTCCTCCTCGAGGCTCTCTCTCACTATCCCCAACCTTTCTTCTTCCTCCGCTTCCTGGGCTGCTATCTCCGAGCTCAGAACCCAAGAAGAAATCAACAGCTTCTATGGAGGTAGTAATGGAGGAGTTCCAGCTGATGTGATGGATGAGTTTCAGCTCCAAGAGCAGCTCTCCTTCCTCAACGATGGCTGTCCACCACCAATGGTGGGACCCAAGTCGCCTGATTTTTTCTACCCACAGTCCAACTTGTCTTCCAGTCCTACCACCGCTTCTGATCCGAACCTTTTCCCCTCCTTGCACGGCTCTGCTAATTGGGGTGGTGGAGGCGGTGGTGGTGGTGGGCCGCTCCATCGACGAAGTTGCTCAGTCAGCGACGTGTGCATGGAGGACCCCAACTCAGGGTTTGGGTGGAAACCCTGCCTGTATTTCGCCAGAGGCTACTGCAAGAACGGAGCCAGCTGCAGGTTCTTGCACAGCGGCGGGCTAGGAGACGCCGTCGTCGACGGCGGTGGACAGGTGGTTGTTGGGTCGCCGAGCAAGCTGGAGATGATGGACCATGAAGCGCTTCTCAGATCTAAAACCGCTCAGCAGCAGAGGCTTGCTGCTGCTTCTCAGCTTATGGCAGCGTCAGCCAATTCCTTTCCTTACTCCTCCAAGTGCATGAACTTTCTACTTCAGCAGCAACAAACTGATTCCCAAAGGGCTGCGGCAGCTTCCTTGATGATGGGTGATGATATGCACAAGTTCAGCCGATCCCGCCTCGAAAGAACCGATTTTTCGATGAATGGCGGGGCGGGGATTGTGAACCCGGCTTCAAGGCAGATATATTTGACTTTCCCGGCAAATAGCACTTTCAGAGAGGAAGATGTCTCAAACTATTTCAGCATGTACGGGCCGGTCCAAGACGTGAGAATCCCATACCAGCAGAAGAGGATGTTTGGATTCGTTACATTCTTGTACCCGGAGACGGTGAAGCTGATTTTGGCCAAAGGGAACCCTCATTTTGTTTGTGATGCTAGAGTGCTTGTCAAGCCTTACAAGGAGAAGGGCAAAGCTCATGAAAAGAAACAACAGCAACAAGTGGAAAGAGGAGATTTGTCTCCCTGTGGTACACCTACTGGGCTGGATGGTAGAGACCCTTACGATCTCCAGCTAGGAGCAAAGATGTTTTACAATTCTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGACTTGCAAGCACTTGAAATTCAAAGTCGAAGACTGATGGGCCTGCAGCTACATGATGTCAAGAAGCATCACCACCACGCTCTTTCTGCCAGCAGTCCGATTCACTCCCCTACCCAGTCTCCCAACATGTTCAGTCGAAACATAGTGCTTCCTTCGGTTCACAACGGCCAAGAAGTTCTCCACGATAACTGTTCTTCTCCGATGCCACACATGACTCCAGCAGTGGATGCTGATCAGCTGCTCAAGGAAGCAGCTGCTGCTGTTCTAGGTAAAGATATGATGGCCAACAACGACGAAAGTGGTAGTGGTAGCCGAAGTAGCAATGGTAGTGGTAAGGAGAGCCCCCATGACGATATCGGTGATTTGCTGGAAGGTTTGGAGCACAATCTTCCTGATAGTCCTTTTGCGTCTCCAACAAAGGCTGCCGGAGAGTACACATCCTCCGCCTTCCCCAACGTGACTAGCGAGGCCAATGGCTCAGATGCCTCATTTGCAGCTGCTAACATAAACTTGGCGACTTCCCTACTTCCAGCATCTTCATCCCTGGACATGGCATCCTTCAAGTCTTTCAACTGCCAAATTCCAAGGTTGAACTCCGGTCACGGAGCCATAGGGATGTACGCTGGCACAGGAGCTGGGCCAAAATGCCCGGTTGGAACTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 Torus zf-CCCH

Protein Analysis

722

Amino Acids

77.54

Weight (kDa)

6.17

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PABC_AtC3H46	PF23182	1 - 64	5.8e-33	AtC3H46 PABC domain
zf-CCCH	PF00642	233 - 253	8e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51950 AT3G51950 AT3G51950 AT3G51950 AT3G63450 AT3G63450 AT3G63450 AT3G63450 AT3G63450 AT3G63450 AT3G63450
fragaria_vesca	FvH4_3g28430 FvH4_7g01970 FvH4_7g01970 FvH4_7g01970 FvH4_7g01970 FvH4_7g01970
malus_domestica	MD02G1298200.v1.1 MD03G1171800.v1.1 MD07G1025800.v1.1 MD09G1140400.v1.1 MD11G1189300.v1.1 MD13G1017100.v1.1
prunus_persica	Prupe.2G026000_v2.0.a1 Prupe.2G026000_v2.0.a1 Prupe.4G255100_v2.0.a1
pyrus_communis	pycom03g12890 pycom07g01970 pycom11g16570
rosa_chinensis	RchiOBHm_Chr1g0318971 RchiOBHm_Chr5g0053281
rosa_laevigata	RLG00000030513 RLG00000034773
rosa_multiflora	Rmu_sc0001966.1_g000024 Rmu_sc0006626.1_g000005 Rmu_sc0028062.1_g000001 Rmu_sc0034847.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029000 Rroxscaffold_4G00328730
rosa_rugosa	Rorug01G0026000 Rorug01G0026000 Rorug01G0026100 Rorug01G0026100 Rorug05G0267900 Rorug05G0267900 Rorug05G0268000 Rorug05G0268100
rosa_samantha	Rh1AG037900 Rh1BG034100 Rh1CG036900 Rh1DG033300 Rh5AG340400 Rh5BG351100 Rh5CG377500 Rh5DG365000
rosa_wichuraiana	Rw1G002920 Rw5G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
AbsI	CCTCGAGG	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	735
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	2 cut(s)	628, 866
AccI	GTMKAC	1 cut(s)	783
AclWI	GGATC	4 cut(s)	34, 47, 551, 1029
AcoI	YGGCCR	3 cut(s)	1266, 1666, 1782
AcsI	RAATTY	3 cut(s)	46, 1518, 2079
AcuI	CTGAAG	2 cut(s)	159, 941
AcyI	GRCGYC	1 cut(s)	774
AfaI	GTAC	5 cut(s)	1172, 1241, 1393, 1934, 2120
AfeI	AGCGCT	1 cut(s)	846
AfiI	CCNNNNNNNGG	9 cut(s)	49, 294, 339, 488, 680, 681, 744, 1249, 2050
AflIII	ACRYGT	2 cut(s)	657, 1626
AgsI	TTSAA	7 cut(s)	69, 1098, 1517, 1523, 2062, 2071, 2092
AjiI	CACGTC	2 cut(s)	658, 1189
AjnI	CCWGG	3 cut(s)	266, 338, 2043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1247, 1279
Alw21I	GWGCWC	2 cut(s)	360, 1884
Alw26I	GTCTC	7 cut(s)	765, 1156, 1241, 1386, 1410, 1623, 1914
AlwI	GGATC	4 cut(s)	34, 47, 551, 1029
AlwNI	CAGNNNCTG	2 cut(s)	1757, 2135
Ama87I	CYCGRG	2 cut(s)	34, 292
Aor51HI	AGCGCT	1 cut(s)	846
AoxI	GGCC	8 cut(s)	623, 1175, 1266, 1540, 1666, 1782, 1968, 2138
ApoI	RAATTY	3 cut(s)	46, 1518, 2079
Asp700I	GAANNNNTTC	3 cut(s)	144, 566, 846
AspLEI	GCGC	1 cut(s)	847
AsuC2I	CCSGG	4 cut(s)	1091, 1121, 1244, 2150
AsuHPI	GGTGA	4 cut(s)	1022, 1264, 1562, 1871
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	34, 292
AvaII	GGWCC	6 cut(s)	52, 134, 491, 670, 835, 1180
BalI	TGGCCA	2 cut(s)	1268, 1784
BamHI	GGATCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	360, 1844
BbsI	GAAGAC	2 cut(s)	525, 1537
Bbv12I	GWGCWC	2 cut(s)	360, 1884
BccI	CCATC	9 cut(s)	263, 418, 461, 639, 826, 1000, 1403, 1531, 1774
BceAI	ACGGC	4 cut(s)	598, 761, 802, 1681
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	3 cut(s)	268, 340, 2045
BclI	TGATCA	1 cut(s)	1732
BcnI	CCSGG	4 cut(s)	1091, 1121, 1244, 2150
BcoDI	GTCTC	7 cut(s)	765, 1156, 1241, 1386, 1410, 1623, 1914
BfaI	CTAG	6 cut(s)	125, 767, 1299, 1436, 1766, 1962
BfmI	CTRYAG	2 cut(s)	742, 1544
BfoI	RGCGCY	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	735
BglII	AGATCT	1 cut(s)	854
BlpI	GCTNAGC	1 cut(s)	867
Bme1390I	CCNGG	7 cut(s)	268, 340, 1091, 1121, 1244, 2045, 2150
Bme18I	GGWCC	6 cut(s)	52, 134, 491, 670, 835, 1180
BmeT110I	CYCGRG	2 cut(s)	34, 292
BmgBI	CACGTC	2 cut(s)	658, 1189
BmiI	GGNNCC	8 cut(s)	41, 54, 492, 493, 672, 736, 1277, 2107
BmrFI	CCNGG	7 cut(s)	268, 340, 1091, 1121, 1244, 2045, 2150
BmrI	ACTGGG	2 cut(s)	1410, 1609
BmsI	GCATC	7 cut(s)	1285, 1576, 1692, 1717, 1972, 2042, 2063
BmtI	GCTAGC	1 cut(s)	128
BmuI	ACTGGG	2 cut(s)	1410, 1609
BoxI	GACNNNNGTC	1 cut(s)	496
BpiI	GAAGAC	2 cut(s)	525, 1537
BplI	GAGNNNNNCTC	4 cut(s)	286, 318, 437, 469
BpmI	CTGGAG	5 cut(s)	250, 845, 1415, 1508, 1701
Bpu1102I	GCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	3 cut(s)	149, 1446, 1727
BpuMI	CCSGG	4 cut(s)	1091, 1121, 1244, 2150
BsaBI	GATNNNNATC	1 cut(s)	1731
BsaHI	GRCGYC	1 cut(s)	774
BsaI	GGTCTC	1 cut(s)	1410
BsaJI	CCNNGG	4 cut(s)	100, 339, 2043, 2084
BsaWI	WCCGGW	1 cut(s)	2096
BsaXI	ACNNNNNCTCC	6 cut(s)	762, 792, 1603, 1633, 1925, 1955
Bsc4I	CCNNNNNNNGG	9 cut(s)	49, 294, 339, 488, 680, 681, 744, 1249, 2050
Bse118I	RCCGGY	1 cut(s)	1177
Bse1I	ACTGG	3 cut(s)	537, 1405, 1615
Bse3DI	GCAATG	1 cut(s)	1828
Bse8I	GATNNNNATC	1 cut(s)	1731
BseBI	CCWGG	3 cut(s)	268, 340, 2045
BseDI	CCNNGG	4 cut(s)	100, 339, 2043, 2084
BseGI	GGATG	8 cut(s)	433, 1221, 1414, 1732, 1937, 2039, 2054, 2121
BseJI	GATNNNNATC	1 cut(s)	1731
BseLI	CCNNNNNNNGG	9 cut(s)	49, 294, 339, 488, 680, 681, 744, 1249, 2050
BseMI	GCAATG	1 cut(s)	1828
BseMII	CTCAG	7 cut(s)	373, 660, 693, 865, 881, 908, 1992
BseNI	ACTGG	3 cut(s)	537, 1405, 1615
BseRI	GAGGAG	6 cut(s)	280, 420, 922, 1386, 1492, 1505
BseYI	CCCAGC	2 cut(s)	181, 2135
BshFI	GGCC	8 cut(s)	625, 1177, 1268, 1542, 1668, 1784, 1970, 2140
BsiHKAI	GWGCWC	2 cut(s)	360, 1884
BsiHKCI	CYCGRG	2 cut(s)	34, 292
BsiSI	CCGG	7 cut(s)	1091, 1121, 1178, 1244, 1926, 2097, 2150
BslFI	GGGAC	2 cut(s)	175, 504
BslI	CCNNNNNNNGG	9 cut(s)	49, 294, 339, 488, 680, 681, 744, 1249, 2050
BsmAI	GTCTC	7 cut(s)	765, 1156, 1241, 1386, 1410, 1623, 1914
BsmBI	CGTCTC	3 cut(s)	765, 1241, 1914
BsmFI	GGGAC	2 cut(s)	175, 504
BsnI	GGCC	8 cut(s)	625, 1177, 1268, 1542, 1668, 1784, 1970, 2140
Bso31I	GGTCTC	1 cut(s)	1410
BsoBI	CYCGRG	2 cut(s)	34, 292
Bsp1286I	GDGCHC	3 cut(s)	360, 1844, 1884
Bsp143I	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
Bsp1720I	GCTNAGC	1 cut(s)	867
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	8 cut(s)	625, 1177, 1268, 1542, 1668, 1784, 1970, 2140
BspCNI	CTCAG	7 cut(s)	372, 659, 692, 864, 880, 907, 1991
BspHI	TCATGA	1 cut(s)	1339
BspLI	GGNNCC	8 cut(s)	41, 54, 492, 493, 672, 736, 1277, 2107
BspMAI	CTGCAG	2 cut(s)	746, 1548
BspMI	ACCTGC	1 cut(s)	735
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	34, 47, 551, 1029
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	1410
BsrBI	CCGCTC	2 cut(s)	628, 866
BsrDI	GCAATG	1 cut(s)	1828
BsrFI	RCCGGY	1 cut(s)	1177
BsrI	ACTGG	3 cut(s)	537, 1405, 1615
BssAI	RCCGGY	1 cut(s)	1177
BssECI	CCNNGG	4 cut(s)	100, 339, 2043, 2084
BssMI	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
BssNI	GRCGYC	1 cut(s)	774
BssT1I	CCWWGG	2 cut(s)	100, 2084
Bst2UI	CCWGG	3 cut(s)	268, 340, 2045
Bst4CI	ACNGT	3 cut(s)	522, 1252, 1691
Bst6I	CTCTTC	2 cut(s)	289, 1205
BstACI	GRCGYC	1 cut(s)	774
BstAPI	GCANNNNNTGC	2 cut(s)	1727, 1757
BstDEI	CTNAG	7 cut(s)	359, 646, 679, 851, 867, 894, 1978
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	8 cut(s)	433, 1221, 1414, 1732, 1937, 2039, 2054, 2121
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	6 cut(s)	42, 559, 857, 1037, 1429, 1735
BstMAI	GTCTC	7 cut(s)	765, 1156, 1241, 1386, 1410, 1623, 1914
BstMBI	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
BstNI	CCWGG	3 cut(s)	268, 340, 2045
BstNSI	RCATGY	3 cut(s)	1171, 1471, 1630
BstPAI	GACNNNNGTC	1 cut(s)	496
BstSCI	CCNGG	7 cut(s)	266, 338, 1089, 1119, 1242, 2043, 2148
BstSFI	CTRYAG	2 cut(s)	742, 1544
BstV2I	GAAGAC	2 cut(s)	525, 1537
BstX2I	RGATCY	2 cut(s)	39, 854
BstYI	RGATCY	2 cut(s)	39, 854
BsuRI	GGCC	8 cut(s)	625, 1177, 1268, 1542, 1668, 1784, 1970, 2140
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	2 cut(s)	658, 1189
BtsCI	GGATG	8 cut(s)	433, 1221, 1414, 1732, 1937, 2039, 2054, 2121
BtsI	GCAGTG	1 cut(s)	1728
BtsIMutI	CAGTG	1 cut(s)	1728
BveI	ACCTGC	1 cut(s)	735
CaiI	CAGNNNCTG	2 cut(s)	1757, 2135
CciI	TCATGA	1 cut(s)	1339
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	1177
CseI	GACGC	3 cut(s)	782, 897, 1896
Csp6I	GTAC	5 cut(s)	1171, 1240, 1392, 1933, 2119
CspCI	CAANNNNNGTGG	2 cut(s)	1810, 1845
CviQI	GTAC	5 cut(s)	1171, 1240, 1392, 1933, 2119
DdeI	CTNAG	7 cut(s)	359, 646, 679, 851, 867, 894, 1978
DpnI	GATC	6 cut(s)	41, 558, 856, 1036, 1428, 1734
DpnII	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	3 cut(s)	1266, 1666, 1782
Eam1104I	CTCTTC	2 cut(s)	289, 1205
EarI	CTCTTC	2 cut(s)	289, 1205
EciI	GGCGGA	1 cut(s)	1933
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	100, 2084
Eco24I	GRGCYC	2 cut(s)	360, 1844
Eco31I	GGTCTC	1 cut(s)	1410
Eco32I	GATATC	1 cut(s)	1855
Eco47I	GGWCC	6 cut(s)	52, 134, 491, 670, 835, 1180
Eco47III	AGCGCT	1 cut(s)	846
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	159, 941
Eco88I	CYCGRG	2 cut(s)	34, 292
EcoICRI	GAGCTC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoO109I	RGGNCCY	2 cut(s)	491, 670
EcoRII	CCWGG	3 cut(s)	266, 338, 2043
EcoRV	GATATC	1 cut(s)	1855
EcoT14I	CCWWGG	2 cut(s)	100, 2084
EcoT38I	GRGCYC	2 cut(s)	360, 1844
ErhI	CCWWGG	2 cut(s)	100, 2084
Esp3I	CGTCTC	3 cut(s)	765, 1241, 1914
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FaqI	GGGAC	2 cut(s)	175, 504
FauI	CCCGC	4 cut(s)	755, 1046, 1064, 1069
FbaI	TGATCA	1 cut(s)	1732
FblI	GTMKAC	1 cut(s)	783
FokI	GGATG	8 cut(s)	440, 1228, 1421, 1739, 1924, 2026, 2041, 2128
FriOI	GRGCYC	2 cut(s)	360, 1844
FspBI	CTAG	6 cut(s)	125, 767, 1299, 1436, 1766, 1962
GlaI	GCGC	1 cut(s)	846
GsaI	CCCAGC	2 cut(s)	185, 2139
GsuI	CTGGAG	5 cut(s)	250, 845, 1415, 1508, 1701
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	8 cut(s)	625, 1177, 1268, 1542, 1668, 1784, 1970, 2140
HapII	CCGG	7 cut(s)	1091, 1121, 1178, 1244, 1926, 2097, 2150
HgaI	GACGC	3 cut(s)	782, 897, 1896
HhaI	GCGC	1 cut(s)	847
Hin1I	GRCGYC	1 cut(s)	774
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	6 cut(s)	5, 974, 1194, 1224, 1600, 1714
HpaII	CCGG	7 cut(s)	1091, 1121, 1178, 1244, 1926, 2097, 2150
HphI	GGTGA	4 cut(s)	1022, 1264, 1562, 1871
Hpy166II	GTNNAC	7 cut(s)	476, 784, 794, 1087, 1394, 1660, 1935
Hpy188III	TCNNGA	5 cut(s)	34, 1340, 1463, 1561, 1892
Hpy8I	GTNNAC	7 cut(s)	476, 784, 794, 1087, 1394, 1660, 1935
Hpy99I	CGWCG	6 cut(s)	639, 659, 782, 785, 788, 1796
HpyCH4III	ACNGT	3 cut(s)	522, 1252, 1691
HpyCH4IV	ACGT	3 cut(s)	657, 1188, 1956
HpyF3I	CTNAG	7 cut(s)	359, 646, 679, 851, 867, 894, 1978
HpySE526I	ACGT	3 cut(s)	657, 1188, 1956
Hsp92I	GRCGYC	1 cut(s)	774
HspAI	GCGC	1 cut(s)	845
KflI	GGGWCCC	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	1732
Kzo9I	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	9 cut(s)	178, 444, 633, 734, 1439, 1492, 1879, 2105, 2132
LweI	GCATC	7 cut(s)	1285, 1576, 1692, 1717, 1972, 2042, 2063
MaeI	CTAG	6 cut(s)	125, 767, 1299, 1436, 1766, 1962
MaeII	ACGT	3 cut(s)	657, 1188, 1956
MaeIII	GTNAC	3 cut(s)	1228, 1957, 2099
MalI	GATC	6 cut(s)	41, 558, 856, 1036, 1428, 1734
MbiI	CCGCTC	2 cut(s)	628, 866
MboI	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
MflI	RGATCY	2 cut(s)	39, 854
MhlI	GDGCHC	3 cut(s)	360, 1844, 1884
MlsI	TGGCCA	2 cut(s)	1268, 1784
MluCI	AATT	7 cut(s)	24, 46, 592, 916, 1456, 1518, 2079
MluNI	TGGCCA	2 cut(s)	1268, 1784
MlyI	GAGTC	1 cut(s)	1708
MmeI	TCCRAC	3 cut(s)	549, 1937, 2134
Mox20I	TGGCCA	2 cut(s)	1268, 1784
MroXI	GAANNNNTTC	3 cut(s)	144, 566, 846
MscI	TGGCCA	2 cut(s)	1268, 1784
MslI	CAYNNNNRTG	1 cut(s)	2114
Msp20I	TGGCCA	2 cut(s)	1268, 1784
MspA1I	CMGCKG	6 cut(s)	416, 741, 759, 1738, 1754, 1997
MspI	CCGG	7 cut(s)	1091, 1121, 1178, 1244, 1926, 2097, 2150
MspR9I	CCNGG	7 cut(s)	268, 340, 1091, 1121, 1244, 2045, 2150
MvaI	CCWGG	3 cut(s)	268, 340, 2045
NciI	CCSGG	4 cut(s)	1091, 1121, 1244, 2150
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
NheI	GCTAGC	1 cut(s)	124
NlaIV	GGNNCC	8 cut(s)	41, 54, 492, 493, 672, 736, 1277, 2107
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	2 cut(s)	1957, 2099
NspI	RCATGY	3 cut(s)	1171, 1471, 1630
PaeR7I	CTCGAG	2 cut(s)	34, 292
PagI	TCATGA	1 cut(s)	1339
PciI	ACATGT	1 cut(s)	1626
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	780, 1050, 1962
PdmI	GAANNNNTTC	3 cut(s)	144, 566, 846
PfeI	GAWTC	4 cut(s)	974, 1194, 1224, 1600
PflFI	GACNNNGTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	49
PleI	GAGTC	1 cut(s)	1708
PpsI	GAGTC	1 cut(s)	1708
PpuMI	RGGWCCY	2 cut(s)	491, 670
PscI	ACATGT	1 cut(s)	1626
PshAI	GACNNNNGTC	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	360
Psp5II	RGGWCCY	2 cut(s)	491, 670
Psp6I	CCWGG	3 cut(s)	266, 338, 2043
PspFI	CCCAGC	2 cut(s)	181, 2135
PspGI	CCWGG	3 cut(s)	266, 338, 2043
PspN4I	GGNNCC	8 cut(s)	41, 54, 492, 493, 672, 736, 1277, 2107
PspPPI	RGGWCCY	2 cut(s)	491, 670
PspXI	VCTCGAGB	1 cut(s)	292
PstI	CTGCAG	2 cut(s)	746, 1548
PstNI	CAGNNNCTG	2 cut(s)	1757, 2135
PsuI	RGATCY	2 cut(s)	39, 854
PsyI	GACNNNGTC	1 cut(s)	776
PvuII	CAGCTG	5 cut(s)	416, 741, 1738, 1754, 1997
RsaI	GTAC	5 cut(s)	1172, 1241, 1393, 1934, 2120
RsaNI	GTAC	5 cut(s)	1171, 1240, 1392, 1933, 2119
RseI	CAYNNNNRTG	1 cut(s)	2114
SacI	GAGCTC	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	289
Sau3AI	GATC	6 cut(s)	39, 556, 854, 1034, 1426, 1732
SchI	GAGTC	1 cut(s)	1708
ScrFI	CCNGG	7 cut(s)	268, 340, 1091, 1121, 1244, 2045, 2150
SduI	GDGCHC	3 cut(s)	360, 1844, 1884
SfaNI	GCATC	7 cut(s)	1285, 1576, 1692, 1717, 1972, 2042, 2063
SfcI	CTRYAG	2 cut(s)	742, 1544
Sfr274I	CTCGAG	2 cut(s)	34, 292
SgrDI	CGTCGACG	1 cut(s)	782
SinI	GGWCC	6 cut(s)	52, 134, 491, 670, 835, 1180
SlaI	CTCGAG	2 cut(s)	34, 292
SmiMI	CAYNNNNRTG	1 cut(s)	2114
SmlI	CTYRAG	5 cut(s)	34, 164, 292, 1461, 1742
SmoI	CTYRAG	5 cut(s)	34, 164, 292, 1461, 1742
Sse9I	AATT	7 cut(s)	24, 46, 592, 916, 1456, 1518, 2079
SspMI	CTAG	6 cut(s)	125, 767, 1299, 1436, 1766, 1962
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	7 cut(s)	266, 338, 1089, 1119, 1242, 2043, 2148
StyI	CCWWGG	2 cut(s)	100, 2084
TaaI	ACNGT	3 cut(s)	522, 1252, 1691
TaiI	ACGT	3 cut(s)	660, 1191, 1959
TaqI	TCGA	8 cut(s)	35, 293, 634, 783, 1044, 1061, 1528, 1636
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	7 cut(s)	24, 46, 592, 916, 1456, 1518, 2079
TatI	WGTACW	1 cut(s)	1932
TauI	GCSGC	3 cut(s)	628, 762, 992
TfiI	GAWTC	4 cut(s)	974, 1194, 1224, 1600
TscAI	CASTG	1 cut(s)	1728
TseFI	GTSAC	2 cut(s)	1957, 2099
Tsp45I	GTSAC	2 cut(s)	1957, 2099
TspDTI	ATGAA	6 cut(s)	27, 855, 959, 1079, 1356, 2028
TspGWI	ACGGA	2 cut(s)	747, 2118
TspRI	CASTG	1 cut(s)	1728
Tth111I	GACNNNGTC	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	6 cut(s)	52, 134, 491, 670, 835, 1180
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	3 cut(s)	46, 1518, 2079
XceI	RCATGY	3 cut(s)	1171, 1471, 1630
XhoI	CTCGAG	2 cut(s)	34, 292
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	3 cut(s)	144, 566, 846
XspI	CTAG	6 cut(s)	125, 767, 1299, 1436, 1766, 1962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.