MD11G1189300.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001189
Physical Location & Seq
Reverse (-)
26732300 .. 26735870
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1189300.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGCCAATATTCTTACCAGAAACACTAACCCTACTTCTCTCTCTGCTTCTAGTAGTGAATGATCCAAAAGCTAATGACTTATTTTATGGAGCTGAAGATTTGAGTTCTTGGGGGGGATGGAAACCATGTTTGTACTATTCAAGAGGGTTCTGTAAAAACGGCAGCGCCTGCCGTTTTCTCCACGGCGGCTCTGCCAGTACTGACGGAGGTAGCTCCGTTAATGTTGACTCTCCAAGCAATGCCAATGTGCTTGAACAGTGCCATGAGATAATCAGATCCAATGCCGCTGCTCAGCAGCAGAAACTAGCCGCACTGTCACACTTCATGGCTGATGGTGGTGGCGCTGGTGCTTCCTCTTTCCCATACAACAAGTGCATGAATTTTCTTATGCAACAACAAAATGAATCCCCAAGGTCAGCAGCATCTGTATTGATGACGGGAGACGAAATTCAGAAGTTTGGGAGATACCAACATGATCGAAACGATTTTTCGCCTTTCAATTTGGGAGGAAACGTGAATCACAGTTCAAGGCAGATCTACTTGACATTCCCAGCTGACAGTACGTTTAGAGAAGAAGATGTCTCTAATTATTTTAGCATATATGGACCAGTGCAAGATGTGAGGATTCCATACCAGCAAAAGAGGATGTTTGGATTTGTTACATTCGTCTACTCCGAGACTGTAAGGAACATTTTGGCGAAAGGGAATCCTCATTTCGTATGCGATTCCCGGGTGCTTGTGAAGCCTTACAAGGAGAAGGGCAAAATCCCAGACAAGAAGCAACAACACCAACAGTTTGAGAATGAAGACCATCATCTGTGTAGAAGCCTGTCCGCCATCGATTCAAGGGAGCGTTATGACCTGAATCTTGGATCAAGGATGTTTTACAATACAGAAGACATGCTTTTGAGAAGGAAAATAGAGGAGCAGGCTAATTTGCATCAAGCCATTGAAATCCAAGAAAGGAGACTTATGAACCTCCGATTACTAGGCATCAAAACCAACAATCTTCATCATCAGAATCAGTACTACAACGGTTTACCACAAGGCTCTCCATTTCCTTCACCAACTTTGGCACATGCATCCAAAAATCAATCCCTCAATTTTTCACCCAAAGACAGTAATGAAGAATTCACACAAGAATATGAAGCTGAAAAACTGCAGCAGGAGATGAATCCAGCTTTTTACCATGGAAATGAAGATAACAATGGCAATGATTTTAAATTGCATGAAAGTATGGAGCACAATCTCCCTGATAGCCTATTTGCATCTCCAAAGAAATCAGCTGCTGGAGACCAAATAAATGTCTTCTCAACTACTGCTTCTGCACAAGTCAATACTGAATGCAGCAGAGCCACAACCATTTCTTCTTCTAATAATACTAATACTAATAATAATAATAATAATAATAATAATTTATTGCCCACCACGTTTACCCCAAATGCAGATTCCCCAAAATCTGTTCTTTCCAAATGTGCAGGTACTGCCACTACTTTCCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

502

Amino Acids

56.15

Weight (kDa)

6.25

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 189 - 236 6.9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1469
AccI GTMKAC 1 cut(s) 669
AciI CCGC 4 cut(s) 186, 285, 309, 834
AclWI GGATC 3 cut(s) 56, 270, 880
AcsI RAATTY 3 cut(s) 379, 447, 1130
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 5 cut(s) 134, 199, 562, 1028, 1483
AgsI TTSAA 6 cut(s) 141, 254, 499, 528, 846, 953
AjuI GAANNNNNNNTTGG 2 cut(s) 1432, 1464
AluBI AGCT 7 cut(s) 71, 92, 213, 554, 1151, 1181, 1286
AluI AGCT 7 cut(s) 71, 92, 213, 554, 1151, 1181, 1286
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 5 cut(s) 435, 586, 671, 961, 1287
AlwI GGATC 3 cut(s) 56, 270, 880
AlwNI CAGNNNCTG 4 cut(s) 168, 425, 1289, 1484
Ama87I CYCGRG 1 cut(s) 729
ApeKI GCWGC 7 cut(s) 162, 287, 295, 419, 1162, 1286, 1347
ApoI RAATTY 3 cut(s) 379, 447, 1130
AspLEI GCGC 2 cut(s) 167, 344
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 2 cut(s) 730, 731
AsuHPI GGTGA 2 cut(s) 1056, 1101
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 1 cut(s) 605
BbsI GAAGAC 3 cut(s) 813, 903, 1300
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 7 cut(s) 174, 274, 307, 431, 1174, 1273, 1359
BccI CCATC 4 cut(s) 111, 326, 819, 845
BceAI ACGGC 3 cut(s) 156, 175, 199
BcnI CCSGG 2 cut(s) 730, 731
BcoDI GTCTC 5 cut(s) 435, 586, 671, 961, 1287
BfaI CTAG 3 cut(s) 50, 305, 989
BfmI CTRYAG 1 cut(s) 1160
BfoI RGCGCY 2 cut(s) 168, 345
BfuAI ACCTGC 1 cut(s) 1469
BglII AGATCT 1 cut(s) 534
BlpI GCTNAGC 1 cut(s) 291
BmcAI AGTACT 2 cut(s) 199, 1028
Bme1390I CCNGG 2 cut(s) 730, 731
Bme18I GGWCC 1 cut(s) 605
BmeT110I CYCGRG 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 605
BmrFI CCNGG 2 cut(s) 730, 731
BmsI GCATC 5 cut(s) 431, 949, 1002, 1091, 1277
BpiI GAAGAC 3 cut(s) 813, 903, 1300
BpmI CTGGAG 1 cut(s) 1311
Bpu1102I GCTNAGC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 730, 731
Bsa29I ATCGAT 1 cut(s) 840
BsaI GGTCTC 1 cut(s) 1287
BsaJI CCNNGG 4 cut(s) 181, 410, 729, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 2 cut(s) 195, 608
Bse3DI GCAATG 2 cut(s) 244, 1219
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 4 cut(s) 181, 410, 729, 1189
BseGI GGATG 4 cut(s) 122, 651, 885, 1082
BseMI GCAATG 2 cut(s) 244, 1219
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 195, 608
BseRI GAGGAG 1 cut(s) 938
BseXI GCAGC 7 cut(s) 174, 274, 307, 431, 1174, 1273, 1359
BseYI CCCAGC 1 cut(s) 550
BsgI GTGCAG 2 cut(s) 1311, 1497
BshVI ATCGAT 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 1245
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 1 cut(s) 730
BsmAI GTCTC 5 cut(s) 435, 586, 671, 961, 1287
BsmBI CGTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 1349
Bso31I GGTCTC 1 cut(s) 1287
BsoBI CYCGRG 1 cut(s) 729
Bsp1286I GDGCHC 1 cut(s) 1245
Bsp143I GATC 5 cut(s) 61, 275, 475, 534, 872
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 4 cut(s) 186, 285, 309, 834
BspCNI CTCAG 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 840
BspMAI CTGCAG 1 cut(s) 1164
BspMI ACCTGC 1 cut(s) 1469
BspPI GGATC 3 cut(s) 56, 270, 880
BspTNI GGTCTC 1 cut(s) 1287
BsrDI GCAATG 2 cut(s) 244, 1219
BsrI ACTGG 2 cut(s) 195, 608
BssECI CCNNGG 4 cut(s) 181, 410, 729, 1189
BssMI GATC 5 cut(s) 61, 275, 475, 534, 872
BssT1I CCWWGG 2 cut(s) 410, 1189
Bst4CI ACNGT 8 cut(s) 258, 315, 524, 560, 682, 795, 1037, 1121
BstAPI GCANNNNNTGC 2 cut(s) 168, 1484
BstC8I GCNNGC 2 cut(s) 169, 930
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 2 cut(s) 181, 1189
BstF5I GGATG 4 cut(s) 122, 651, 885, 1082
BstH2I RGCGCY 2 cut(s) 168, 345
BstHHI GCGC 2 cut(s) 167, 344
BstKTI GATC 5 cut(s) 64, 278, 478, 537, 875
BstMAI GTCTC 5 cut(s) 435, 586, 671, 961, 1287
BstMBI GATC 5 cut(s) 61, 275, 475, 534, 872
BstMWI GCNNNNNNNGC 3 cut(s) 168, 742, 1484
BstNSI RCATGY 2 cut(s) 904, 1082
BstSCI CCNGG 2 cut(s) 728, 729
BstSFI CTRYAG 1 cut(s) 1160
BstV1I GCAGC 7 cut(s) 174, 274, 307, 431, 1174, 1273, 1359
BstV2I GAAGAC 3 cut(s) 813, 903, 1300
BstX2I RGATCY 2 cut(s) 275, 534
BstYI RGATCY 2 cut(s) 275, 534
Bsu15I ATCGAT 1 cut(s) 840
BsuTUI ATCGAT 1 cut(s) 840
BtgI CCRYGG 2 cut(s) 181, 1189
BtsCI GGATG 4 cut(s) 122, 651, 885, 1082
BtsIMutI CAGTG 3 cut(s) 263, 311, 615
BveI ACCTGC 1 cut(s) 1469
Cac8I GCNNGC 2 cut(s) 169, 930
CaiI CAGNNNCTG 4 cut(s) 168, 425, 1289, 1484
CfoI GCGC 2 cut(s) 167, 344
Cfr13I GGNCC 1 cut(s) 605
Cfr9I CCCGGG 1 cut(s) 729
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 5 cut(s) 133, 198, 561, 1027, 1482
CviAII CATG 9 cut(s) 126, 263, 325, 376, 473, 901, 1079, 1190, 1229
CviQI GTAC 5 cut(s) 133, 198, 561, 1027, 1482
DdeI CTNAG 1 cut(s) 291
DpnI GATC 5 cut(s) 63, 277, 477, 536, 874
DpnII GATC 5 cut(s) 61, 275, 475, 534, 872
DraI TTTAAA 1 cut(s) 1222
EciI GGCGGA 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 410, 1189
Eco31I GGTCTC 1 cut(s) 1287
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 729
EcoRI GAATTC 1 cut(s) 1130
EcoT14I CCWWGG 2 cut(s) 410, 1189
EcoT22I ATGCAT 1 cut(s) 1084
ErhI CCWWGG 2 cut(s) 410, 1189
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 9 cut(s) 129, 266, 328, 379, 476, 904, 1082, 1193, 1232
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FatI CATG 9 cut(s) 125, 262, 324, 375, 472, 900, 1078, 1189, 1228
FblI GTMKAC 1 cut(s) 669
FokI GGATG 4 cut(s) 129, 658, 892, 1069
FspBI CTAG 3 cut(s) 50, 305, 989
GlaI GCGC 2 cut(s) 166, 343
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 1311
HaeII RGCGCY 2 cut(s) 168, 345
HapII CCGG 1 cut(s) 730
HhaI GCGC 2 cut(s) 167, 344
Hin1II CATG 9 cut(s) 129, 266, 328, 379, 476, 904, 1082, 1193, 1232
Hin6I GCGC 2 cut(s) 165, 342
HinP1I GCGC 2 cut(s) 165, 342
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 730
HphI GGTGA 2 cut(s) 1056, 1101
Hpy166II GTNNAC 4 cut(s) 226, 670, 1040, 1434
Hpy188I TCNGA 5 cut(s) 275, 453, 676, 983, 1020
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 4 cut(s) 226, 670, 1040, 1434
HpyAV CCTTC 3 cut(s) 751, 906, 1071
HpyCH4III ACNGT 8 cut(s) 258, 315, 524, 560, 682, 795, 1037, 1121
HpyCH4IV ACGT 3 cut(s) 513, 563, 1430
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 742, 1484
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 3 cut(s) 513, 563, 1430
Hsp92II CATG 9 cut(s) 129, 266, 328, 379, 476, 904, 1082, 1193, 1232
HspAI GCGC 2 cut(s) 165, 342
Kzo9I GATC 5 cut(s) 61, 275, 475, 534, 872
LmnI GCTCC 5 cut(s) 89, 218, 850, 925, 1240
Lsp1109I GCAGC 7 cut(s) 174, 274, 307, 431, 1174, 1273, 1359
LweI GCATC 5 cut(s) 431, 949, 1002, 1091, 1277
MaeI CTAG 3 cut(s) 50, 305, 989
MaeII ACGT 3 cut(s) 513, 563, 1430
MaeIII GTNAC 2 cut(s) 315, 658
MalI GATC 5 cut(s) 63, 277, 477, 536, 874
MboI GATC 5 cut(s) 61, 275, 475, 534, 872
MflI RGATCY 2 cut(s) 275, 534
MhlI GDGCHC 1 cut(s) 1245
MluCI AATT 9 cut(s) 379, 447, 499, 586, 934, 1102, 1130, 1223, 1414
MlyI GAGTC 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 1084
MseI TTAA 2 cut(s) 219, 1221
MslI CAYNNNNRTG 1 cut(s) 1194
MspA1I CMGCKG 3 cut(s) 287, 554, 1286
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 2 cut(s) 730, 731
Mva1269I GAATGC 1 cut(s) 1349
MwoI GCNNNNNNNGC 3 cut(s) 168, 742, 1484
NciI CCSGG 2 cut(s) 730, 731
NcoI CCATGG 1 cut(s) 1189
NdeII GATC 5 cut(s) 61, 275, 475, 534, 872
NlaIII CATG 9 cut(s) 129, 266, 328, 379, 476, 904, 1082, 1193, 1232
NmuCI GTSAC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 1084
NspI RCATGY 2 cut(s) 904, 1082
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PctI GAATGC 1 cut(s) 1349
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 1 cut(s) 1164
PstNI CAGNNNCTG 4 cut(s) 168, 425, 1289, 1484
PsuI RGATCY 2 cut(s) 275, 534
PvuII CAGCTG 2 cut(s) 554, 1286
RsaI GTAC 5 cut(s) 134, 199, 562, 1028, 1483
RsaNI GTAC 5 cut(s) 133, 198, 561, 1027, 1482
RseI CAYNNNNRTG 1 cut(s) 1194
SaqAI TTAA 2 cut(s) 219, 1221
Sau3AI GATC 5 cut(s) 61, 275, 475, 534, 872
Sau96I GGNCC 1 cut(s) 605
ScaI AGTACT 2 cut(s) 199, 1028
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 730, 731
SduI GDGCHC 1 cut(s) 1245
SfaNI GCATC 5 cut(s) 431, 949, 1002, 1091, 1277
SfcI CTRYAG 1 cut(s) 1160
SinI GGWCC 1 cut(s) 605
SmaI CCCGGG 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 1194
Sse9I AATT 9 cut(s) 379, 447, 499, 586, 934, 1102, 1130, 1223, 1414
SsiI CCGC 4 cut(s) 186, 285, 309, 834
SspI AATATT 1 cut(s) 9
SspMI CTAG 3 cut(s) 50, 305, 989
StyD4I CCNGG 2 cut(s) 728, 729
StyI CCWWGG 2 cut(s) 410, 1189
TaaI ACNGT 8 cut(s) 258, 315, 524, 560, 682, 795, 1037, 1121
TaiI ACGT 3 cut(s) 516, 566, 1433
TaqI TCGA 2 cut(s) 478, 840
TasI AATT 9 cut(s) 379, 447, 499, 586, 934, 1102, 1130, 1223, 1414
TatI WGTACW 3 cut(s) 132, 197, 1026
TauI GCSGC 3 cut(s) 189, 287, 311
Tru1I TTAA 2 cut(s) 219, 1221
Tru9I TTAA 2 cut(s) 219, 1221
TscAI CASTG 3 cut(s) 263, 318, 615
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 7 cut(s) 162, 287, 295, 419, 1162, 1286, 1347
Tsp45I GTSAC 1 cut(s) 315
TspGWI ACGGA 2 cut(s) 205, 219
TspMI CCCGGG 1 cut(s) 729
TspRI CASTG 3 cut(s) 263, 318, 615
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 3 cut(s) 379, 447, 1130
XceI RCATGY 2 cut(s) 904, 1082
XmaI CCCGGG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 3 cut(s) 50, 305, 989
ZrmI AGTACT 2 cut(s) 199, 1028
Zsp2I ATGCAT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.