Rorug01G0026000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001189
Physical Location & Seq
Reverse (-)
4397187 .. 4400688
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0026000.1

Sequence Viewer

Length: 1905 bp
ATGGGGTCATCTAATTCTAAACCACATCCAGCCTCCGCAGAATCCCCACCATATTATTCTAAACCATCTCCATCTTCCCCGAAACCCCCACCATATTCTAAACCACCTTCATCCCCAGCTTCTTCTAAACCACCTTCATCTCCAGTTTCCCCACAACCCCCAGCATATTCTTCTAAGCCACCTTCATCCCCAGCATATTCTTCTAAACCACCTTCATCTCCAGCTTCCCCACAACCCCCACCATATTCTTCTAAACCACCTTCATCCCCAGCTTCTTCTAAACCACCTTCATCTCCAGTTTCCCCACAACCCCCAGCATATTCTTCTAAGCCACCTTCATCCCCAGCATATTCTTCTAAACCACCTTCATCTCCAGTTTCCCCACAACCCCCAGCATATTCTTCTAAACCATCTTCATCTCCATCTTCCCCAAAGTGCCCTCCTGTCTTTAAGTCAGTTCTACGCCCAGCATCCTCCTCCTCAAATAATGATGATATAAGTCAACACCAACAATATGAGAAGAGAACAGCTTTTGTGTGTCTTGAAAAGGATCCATTACCTGTATTCATGATTCCTGAGGATATCGAAGCCTTGATCAAGAAAGAAATTGCGCCCAAAGTTCTGAATCGCCCATTATCTCCCACAACATACAAGGACTACTTTGCCGCTCTCTTATATTCTGAAGATTTCTACTTGGAGAAATGGAGTGATTTCCTTTTGAAGGGTGTGACATTAGCGTTGGATGAAAGTTCAATTTATAAAAACCGGAAAAAGGAAGCACTTTATAAAAATCGGAAAAAGGAAGATAAGGAAGACAAAACCTTTGTAGCATTTGAGCTTGATTGTGTTCCTCAAAAACGGCCATTCCTCTTATCAAGGGACTTGGTCCTTGCACGACCAGTGGGTAAGAGTACTGCTGAGCCCTTTAAGGGCCTCATCTATAAAGTTGTTGGGAGCAATCGCGTTTTGGTTGAATTTGAGGATGGATTTTATTCTTATCATCATTCCAACAAAAAATATGATATCAGCTTCTCATTCAATAGAGTTTGTTTGAAAAGAGCCCACCATGCAGTAAAAGCTGCATCAGATGCTTTGTTTCAGAACTTCCTCTTCCCTGACTGTGACTCACGAGCAAGCATTCCTACTGCACCAGCTCTGCTTTCTACTACCTGTCATAAGCTTGATCAAGATCAACGTTCTGCAGTCGGACATATCTTAAGGATTCAGGGCTCACCACCTTATGTAGTAACTGGTCCGGACTGTGAAGGCAAATCTTTTGCATATTTAAGAGAACCTTCAAGAACTGGAGTGGTTGTTAGTGAAGCAGTATACCAATTATGTCAGAAGTCACCAGAGTATCGCATTCTTATCTGTGCGCCTACTAACAGCTGCTGCGATATGCTGATGAGAAGCTTGGTGAAGGTGATTCCAGAGTCGACTATGTTTCGTGCCAATGCTGCATTCCGAGAGAGAGATGAGGTGCCTGAGGACATCCTCCGCTCATCCCTTTACAAAGAGTCTTGTTTTTCTTGTCCTGCAATAGAGAAACTCCGGGAATACAAGGTGATTTTCTCAACTTTCATGAGTAGCTTCCGACTACATGATAAAGGCATAGCTGCTGGACATTTTAGCCATATTTTTCTGGTGGATGTTTCATCTGCTATTGAGCCGGAAACATTGGTCGCCCTGACTAACTTCGCTGTCAAGGCCACTAGTGTTATAGTTACTGGTAATCATGGAAATAGTCCGCTCTGGGTTCGCGCTGACATTGCAAGGAAAAAGGGACTCAAGATTTCATACTTTGAACGACTCTGCAAGCTCAGGCCATATAGAAGCCCCAGTCCAATGTTCATCACACAACTAGACCTGAACCAAAAGTCAGAGTACCAAACAAGACCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

634

Amino Acids

70.13

Weight (kDa)

9.3

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 268 - 344 1.9e-08 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 759, 786
AccB1I GGYRCC 1 cut(s) 1480
AccBSI CCGCTC 3 cut(s) 668, 1500, 1750
AccI GTMKAC 2 cut(s) 1329, 1436
AccII CGCG 2 cut(s) 963, 1761
AccIII TCCGGA 1 cut(s) 1255
AciI CCGC 4 cut(s) 36, 666, 1498, 1748
AclI AACGTT 1 cut(s) 1195
AclWI GGATC 2 cut(s) 545, 558
AcoI YGGCCR 1 cut(s) 860
AcsI RAATTY 1 cut(s) 974
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 2 cut(s) 913, 1886
AfiI CCNNNNNNNGG 3 cut(s) 721, 772, 929
AflII CTTAAG 1 cut(s) 1216
AgsI TTSAA 8 cut(s) 545, 721, 753, 974, 1039, 1054, 1299, 1805
AhlI ACTAGT 1 cut(s) 1712
AjuI GAANNNNNNNTTGG 2 cut(s) 1445, 1477
AlwI GGATC 2 cut(s) 545, 558
AlwNI CAGNNNCTG 1 cut(s) 1392
Aor13HI TCCGGA 1 cut(s) 1255
AoxI GGCC 4 cut(s) 860, 931, 1707, 1823
ApeKI GCWGC 5 cut(s) 1079, 1389, 1392, 1457, 1616
ApoI RAATTY 1 cut(s) 974
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 3 cut(s) 613, 1378, 1763
AspS9I GGNCC 3 cut(s) 886, 931, 1253
AsuC2I CCSGG 1 cut(s) 1553
AsuHPI GGTGA 5 cut(s) 1224, 1341, 1429, 1435, 1576
AvaII GGWCC 2 cut(s) 886, 1253
AxyI CCTNAGG 2 cut(s) 576, 1485
BaeGI GKGCMC 1 cut(s) 440
BaeI ACNNNNGTAYC 2 cut(s) 1340, 1373
BamHI GGATCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 1480
BanII GRGCYC 3 cut(s) 924, 1063, 1232
BauI CACGAG 1 cut(s) 1128
BbsI GAAGAC 1 cut(s) 819
BbvI GCAGC 5 cut(s) 1066, 1376, 1379, 1444, 1603
BccI CCATC 5 cut(s) 73, 79, 418, 430, 977
BceAI ACGGC 1 cut(s) 875
BclI TGATCA 2 cut(s) 594, 1183
BcnI CCSGG 1 cut(s) 1553
BcuI ACTAGT 1 cut(s) 1712
BfaI CTAG 2 cut(s) 1713, 1862
BfmI CTRYAG 1 cut(s) 1200
BfrI CTTAAG 1 cut(s) 1216
BisI GCNGC 6 cut(s) 666, 1080, 1390, 1393, 1458, 1617
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 6 cut(s) 667, 1081, 1391, 1394, 1459, 1618
BmcAI AGTACT 1 cut(s) 913
Bme1390I CCNGG 1 cut(s) 1553
Bme18I GGWCC 2 cut(s) 886, 1253
BmgT120I GGNCC 3 cut(s) 886, 931, 1253
BmiI GGNNCC 2 cut(s) 552, 1482
BmrFI CCNGG 1 cut(s) 1553
BmrI ACTGGG 1 cut(s) 1833
BmsI GCATC 3 cut(s) 479, 1078, 1091
BmuI ACTGGG 1 cut(s) 1833
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 5 cut(s) 126, 204, 279, 357, 1326
Bpu10I CCTNAGC 1 cut(s) 1820
Bpu1102I GCTNAGC 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 1772
BpuMI CCSGG 1 cut(s) 1553
BsaBI GATNNNNATC 1 cut(s) 1188
BsaWI WCCGGW 2 cut(s) 765, 1255
BsaXI ACNNNNNCTCC 2 cut(s) 1299, 1329
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 772, 929
Bse1I ACTGG 8 cut(s) 143, 296, 374, 899, 1255, 1309, 1732, 1839
Bse21I CCTNAGG 2 cut(s) 576, 1485
Bse3DI GCAATG 1 cut(s) 1767
Bse8I GATNNNNATC 1 cut(s) 1188
BseAI TCCGGA 1 cut(s) 1255
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 3 cut(s) 721, 772, 929
BseMI GCAATG 1 cut(s) 1767
BseMII CTCAG 4 cut(s) 567, 909, 1476, 1834
BseNI ACTGG 8 cut(s) 143, 296, 374, 899, 1255, 1309, 1732, 1839
BseRI GAGGAG 2 cut(s) 466, 469
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 5 cut(s) 1066, 1376, 1379, 1444, 1603
BseYI CCCAGC 8 cut(s) 115, 160, 190, 268, 313, 343, 391, 466
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 2 cut(s) 963, 1761
BshFI GGCC 4 cut(s) 862, 933, 1709, 1825
BshNI GGYRCC 1 cut(s) 1480
BsiSI CCGG 4 cut(s) 766, 1256, 1552, 1670
BslFI GGGAC 2 cut(s) 893, 1797
BslI CCNNNNNNNGG 3 cut(s) 721, 772, 929
BsmFI GGGAC 2 cut(s) 893, 1797
BsmI GAATGC 3 cut(s) 1137, 1362, 1460
BsnI GGCC 4 cut(s) 862, 933, 1709, 1825
Bsp1286I GDGCHC 4 cut(s) 440, 924, 1063, 1232
Bsp13I TCCGGA 1 cut(s) 1255
Bsp143I GATC 4 cut(s) 550, 594, 1183, 1189
Bsp1720I GCTNAGC 1 cut(s) 918
BspACI CCGC 4 cut(s) 36, 666, 1498, 1748
BspANI GGCC 4 cut(s) 862, 933, 1709, 1825
BspCNI CTCAG 4 cut(s) 568, 910, 1477, 1833
BspEI TCCGGA 1 cut(s) 1255
BspFNI CGCG 2 cut(s) 963, 1761
BspHI TCATGA 2 cut(s) 567, 1581
BspLI GGNNCC 2 cut(s) 552, 1482
BspMAI CTGCAG 1 cut(s) 1204
BspPI GGATC 2 cut(s) 545, 558
BspT107I GGYRCC 1 cut(s) 1480
BspTI CTTAAG 1 cut(s) 1216
BsrBI CCGCTC 3 cut(s) 668, 1500, 1750
BsrDI GCAATG 1 cut(s) 1767
BsrI ACTGG 8 cut(s) 143, 296, 374, 899, 1255, 1309, 1732, 1839
BssMI GATC 4 cut(s) 550, 594, 1183, 1189
BssNAI GTATAC 1 cut(s) 1330
BssSI CACGAG 1 cut(s) 1128
Bst1107I GTATAC 1 cut(s) 1330
Bst2BI CACGAG 1 cut(s) 1128
Bst4CI ACNGT 2 cut(s) 1121, 1262
Bst6I CTCTTC 2 cut(s) 515, 1115
BstAFI CTTAAG 1 cut(s) 1216
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstC8I GCNNGC 2 cut(s) 1135, 1817
BstDEI CTNAG 6 cut(s) 174, 327, 576, 918, 1485, 1820
BstENI CCTNNNNNAGG 1 cut(s) 719
BstFNI CGCG 2 cut(s) 963, 1761
BstHHI GCGC 3 cut(s) 613, 1378, 1763
BstKTI GATC 4 cut(s) 553, 597, 1186, 1192
BstMBI GATC 4 cut(s) 550, 594, 1183, 1189
BstMWI GCNNNNNNNGC 6 cut(s) 1067, 1076, 1088, 1457, 1706, 1769
BstSCI CCNGG 1 cut(s) 1551
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 2 cut(s) 963, 1761
BstV1I GCAGC 5 cut(s) 1066, 1376, 1379, 1444, 1603
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BstZ17I GTATAC 1 cut(s) 1330
Bsu36I CCTNAGG 2 cut(s) 576, 1485
BsuRI GGCC 4 cut(s) 862, 933, 1709, 1825
BtsIMutI CAGTG 1 cut(s) 906
Cac8I GCNNGC 2 cut(s) 1135, 1817
CaiI CAGNNNCTG 1 cut(s) 1392
CciI TCATGA 2 cut(s) 567, 1581
CfoI GCGC 3 cut(s) 613, 1378, 1763
Cfr13I GGNCC 3 cut(s) 886, 931, 1253
Csp6I GTAC 2 cut(s) 912, 1885
CviAII CATG 5 cut(s) 568, 1067, 1582, 1601, 1736
CviQI GTAC 2 cut(s) 912, 1885
DdeI CTNAG 6 cut(s) 174, 327, 576, 918, 1485, 1820
DpnI GATC 4 cut(s) 552, 596, 1185, 1191
DpnII GATC 4 cut(s) 550, 594, 1183, 1189
EaeI YGGCCR 1 cut(s) 860
Eam1104I CTCTTC 2 cut(s) 515, 1115
EarI CTCTTC 2 cut(s) 515, 1115
Eco24I GRGCYC 3 cut(s) 924, 1063, 1232
Eco32I GATATC 2 cut(s) 583, 1024
Eco47I GGWCC 2 cut(s) 886, 1253
Eco57I CTGAAG 1 cut(s) 702
Eco81I CCTNAGG 2 cut(s) 576, 1485
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 931
EcoRV GATATC 2 cut(s) 583, 1024
EcoT38I GRGCYC 3 cut(s) 924, 1063, 1232
FaeI CATG 5 cut(s) 571, 1070, 1585, 1604, 1739
FalI AAGNNNNNCTT 4 cut(s) 644, 676, 1279, 1311
FaqI GGGAC 2 cut(s) 893, 1797
FatI CATG 5 cut(s) 567, 1066, 1581, 1600, 1735
FbaI TGATCA 2 cut(s) 594, 1183
FblI GTMKAC 2 cut(s) 1329, 1436
Fnu4HI GCNGC 6 cut(s) 666, 1080, 1390, 1393, 1458, 1617
FriOI GRGCYC 3 cut(s) 924, 1063, 1232
Fsp4HI GCNGC 6 cut(s) 666, 1080, 1390, 1393, 1458, 1617
FspBI CTAG 2 cut(s) 1713, 1862
GlaI GCGC 3 cut(s) 612, 1377, 1762
GluI GCNGC 6 cut(s) 666, 1080, 1390, 1393, 1458, 1617
GsaI CCCAGC 8 cut(s) 119, 164, 194, 272, 317, 347, 395, 470
GsuI CTGGAG 5 cut(s) 126, 204, 279, 357, 1326
HaeIII GGCC 4 cut(s) 862, 933, 1709, 1825
HapII CCGG 4 cut(s) 766, 1256, 1552, 1670
HhaI GCGC 3 cut(s) 613, 1378, 1763
Hin1II CATG 5 cut(s) 571, 1070, 1585, 1604, 1739
Hin6I GCGC 3 cut(s) 611, 1376, 1761
HinP1I GCGC 3 cut(s) 611, 1376, 1761
HincII GTYRAC 2 cut(s) 503, 1437
HindII GTYRAC 2 cut(s) 503, 1437
HindIII AAGCTT 2 cut(s) 1178, 1411
HpaII CCGG 4 cut(s) 766, 1256, 1552, 1670
HphI GGTGA 5 cut(s) 1224, 1341, 1429, 1435, 1576
Hpy166II GTNNAC 3 cut(s) 503, 1330, 1437
Hpy8I GTNNAC 3 cut(s) 503, 1330, 1437
HpyCH4III ACNGT 2 cut(s) 1121, 1262
HpyCH4IV ACGT 1 cut(s) 1195
HpyF10VI GCNNNNNNNGC 6 cut(s) 1067, 1076, 1088, 1457, 1706, 1769
HpyF3I CTNAG 6 cut(s) 174, 327, 576, 918, 1485, 1820
HpySE526I ACGT 1 cut(s) 1195
Hsp92II CATG 5 cut(s) 571, 1070, 1585, 1604, 1739
HspAI GCGC 3 cut(s) 611, 1376, 1761
Kpn2I TCCGGA 1 cut(s) 1255
Ksp22I TGATCA 2 cut(s) 594, 1183
Kzo9I GATC 4 cut(s) 550, 594, 1183, 1189
LmnI GCTCC 1 cut(s) 954
Lsp1109I GCAGC 5 cut(s) 1066, 1376, 1379, 1444, 1603
LweI GCATC 3 cut(s) 479, 1078, 1091
MaeI CTAG 2 cut(s) 1713, 1862
MaeII ACGT 1 cut(s) 1195
MaeIII GTNAC 5 cut(s) 727, 1121, 1246, 1347, 1723
MalI GATC 4 cut(s) 552, 596, 1185, 1191
MbiI CCGCTC 3 cut(s) 668, 1500, 1750
MboI GATC 4 cut(s) 550, 594, 1183, 1189
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 4 cut(s) 440, 924, 1063, 1232
MluCI AATT 5 cut(s) 13, 606, 753, 974, 1334
MlyI GAGTC 5 cut(s) 1118, 1442, 1526, 1779, 1803
MmeI TCCRAC 4 cut(s) 720, 1032, 1186, 1618
MroI TCCGGA 1 cut(s) 1255
MseI TTAA 4 cut(s) 450, 927, 1217, 1286
MspA1I CMGCKG 1 cut(s) 1389
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 4 cut(s) 766, 1256, 1552, 1670
MspR9I CCNGG 1 cut(s) 1553
Mva1269I GAATGC 3 cut(s) 1137, 1362, 1460
MvnI CGCG 2 cut(s) 963, 1761
MwoI GCNNNNNNNGC 6 cut(s) 1067, 1076, 1088, 1457, 1706, 1769
NciI CCSGG 1 cut(s) 1553
NdeII GATC 4 cut(s) 550, 594, 1183, 1189
NlaIII CATG 5 cut(s) 571, 1070, 1585, 1604, 1739
NlaIV GGNNCC 2 cut(s) 552, 1482
NmuCI GTSAC 3 cut(s) 727, 1121, 1347
PagI TCATGA 2 cut(s) 567, 1581
PctI GAATGC 3 cut(s) 1137, 1362, 1460
PfeI GAWTC 5 cut(s) 41, 571, 625, 1222, 1426
PflFI GACNNNGTC 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 1551
PkrI GCNGC 6 cut(s) 667, 1081, 1391, 1394, 1459, 1618
PleI GAGTC 5 cut(s) 1118, 1441, 1525, 1779, 1803
PpsI GAGTC 5 cut(s) 1118, 1441, 1525, 1779, 1803
PsiI TTATAA 2 cut(s) 759, 786
Psp1406I AACGTT 1 cut(s) 1195
PspFI CCCAGC 8 cut(s) 115, 160, 190, 268, 313, 343, 391, 466
PspN4I GGNNCC 2 cut(s) 552, 1482
PspPI GGNCC 3 cut(s) 886, 931, 1253
PstI CTGCAG 1 cut(s) 1204
PstNI CAGNNNCTG 1 cut(s) 1392
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 1389
RsaI GTAC 2 cut(s) 913, 1886
RsaNI GTAC 2 cut(s) 912, 1885
SalI GTCGAC 1 cut(s) 1435
SaqAI TTAA 4 cut(s) 450, 927, 1217, 1286
SatI GCNGC 6 cut(s) 666, 1080, 1390, 1393, 1458, 1617
Sau3AI GATC 4 cut(s) 550, 594, 1183, 1189
Sau96I GGNCC 3 cut(s) 886, 931, 1253
ScaI AGTACT 1 cut(s) 913
SchI GAGTC 5 cut(s) 1118, 1442, 1526, 1779, 1803
ScrFI CCNGG 1 cut(s) 1553
SduI GDGCHC 4 cut(s) 440, 924, 1063, 1232
SfaNI GCATC 3 cut(s) 479, 1078, 1091
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 2 cut(s) 886, 1253
SmlI CTYRAG 2 cut(s) 1216, 1787
SmoI CTYRAG 2 cut(s) 1216, 1787
SpeI ACTAGT 1 cut(s) 1712
Sse9I AATT 5 cut(s) 13, 606, 753, 974, 1334
SsiI CCGC 4 cut(s) 36, 666, 1498, 1748
SspMI CTAG 2 cut(s) 1713, 1862
StyD4I CCNGG 1 cut(s) 1551
TaaI ACNGT 2 cut(s) 1121, 1262
TaiI ACGT 1 cut(s) 1198
TaqI TCGA 2 cut(s) 585, 1436
TasI AATT 5 cut(s) 13, 606, 753, 974, 1334
TatI WGTACW 1 cut(s) 911
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 5 cut(s) 41, 571, 625, 1222, 1426
Tru1I TTAA 4 cut(s) 450, 927, 1217, 1286
Tru9I TTAA 4 cut(s) 450, 927, 1217, 1286
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 3 cut(s) 727, 1121, 1347
TseI GCWGC 5 cut(s) 1079, 1389, 1392, 1457, 1616
Tsp45I GTSAC 3 cut(s) 727, 1121, 1347
TspRI CASTG 1 cut(s) 906
Tth111I GACNNNGTC 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 1216
VpaK11BI GGWCC 2 cut(s) 886, 1253
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 974
XmiI GTMKAC 2 cut(s) 1329, 1436
XspI CTAG 2 cut(s) 1713, 1862
ZrmI AGTACT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.