MD07G1025800.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001189
Physical Location & Seq
Forward (+)
2169224 .. 2174371
5148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1025800.v1.1.491

Sequence Viewer

Length: 2157 bp
ATGGATTCCTACGAAGCTACAAGAATTGTGTTCTCAAGGATCCAAAATTTGGACCCAGAAAATGCTTCAAAAATCATGGGTCTACTTCTGATACAAGACCATGGGGAGAAGGAAATGATAAGGCTTGCTTTTGGGCCTGAAGCTTTTCTCCACTCGGTCATTCTCAAGGCAAGGAAGGAGCTGGGAGTGCCTTTATCATCGAACTCTTCTTCTACTCCTTCCACCCCCCCTTCTCCTTCCCCCTTCACAAACCCCATTGCTATCTCCAGGCAGAACTCTTGCTCTTCCGCCTCGAGGCTCTCTCTCACTATCCCAAACCCTTGTTCCTCGGCTTCCTGGGCTGCTCTCTCCGAGCTCAGAAACCAAGAAGAAATAAACAGCTTTTATGGAGGAGTTCCAACTGATGTGATGGATGAGTTTCAGCTCCAAGAGCAGCTGTCCTTCCTTAACGACGGCTGTCCGCCACCAATGGTGGGACCCAAGTCGCCTGATTTTTTCTACCCTCAGTCCGACTTGTCTTCCAGTCCCAGTCTCACCACCGCTTCTGATCCGAACCTTTTCCCCTCCTTCCACGGCTCTGCTAATTGGGGTGGTGGAGGCGGTGGCGGTGGTGGGCCGCTCCACCGACGAAGTTGCTCAGTCAGCGACGTGAGCTTGGAGGACCCCAACTCAGGGTTTGGGTGGAAACCCTGCTTGTATTTCGCCAGAGGCTACTGCAAGAACGGAGCCAGCTGCAGATTCTTGCACGGCGGCGGGCTTGGAGACGCCGTCGTCGACGGCGGTGGACAGGTGGTTGTTGGGTCGCCGAGCAAGCTTGAGATGATGGACCACGAAGCACTTCTTAGATCTAAAACCGCTCAGCAGCAGAGACTTGCTACTGCTTCTCAGCTCATGGCGGCGTCAGCCAACTCCTTCCCGTACTCCTACAAGTGCATGAACTTCCTTCTTCAGCAGCAACAAACTGACGCCCAAAGGGCTGCAGCAGCTGCCTTGATGGGTGATGATATGCACAAATTCAGCCGATCCCGCCTCGAAAGATCCGATTTTTCGATGAATGGCGGGGCGGGGATTGTGAACCCAGCTTCAAGGCAGATATACCTGACTTTCCCGGCCGAGAGCACTTTCAGAGAGGAAGATGTCTCAAACTATTTCAGTATTTACGGGCCGGTTCAAGACGTGCGAATCCCGTACCAGCAGAAGAGGATGTTTGGATTCGTTACATTCGTTTACCCGGAGACGGTGAAGCTCATCTTGGCCAAAGGGAACCCTCATTTTGTTTGTGATGCAAGAGTGCTTGTCAAGCCTTACAAGGAGAAGGGCAAAGTTCATGAAAAGAAACAACAGCAACAAGGAGAAAGAGGAGATTTGTCTCCCTGTGGTACACCTACTGGGCTGGATGCTAGAGACCCTTATGATCTCCAACTAGGACCGAGGATGTTTTACAATCCTCAAGATATGCTATGGAGAAGGAAGCTGGAGGAGCAAGCTGAGTTGCAGCAAGCACTTGAAATTCAAAGTCGAAGACTGATGGGCCTGCAGCTACTTGATGTCAAGAAGCATCACCACTGCACGCTTTCTGCCAGCAGTCCGATTCACTCCCCTACCCAGTCTCCCAACATGTTCAATCAAAACCTGGTGCATCCTTCGGTTCACAGCGGCCAAGAAGTTCCCCACGATAACTGTTCTTCTCCGATGCCACACATGACTCCAGCAGTGGATGCCGATCAGCTGCTTAAGGAAGCAGCTGCCGCTGTTCTAGGTGAAGGTTCAATTGCCAACAATGACGAAAATGGCAGTGGTAGCCAAAGTGGCAATAGTAGTGGCAAGGAGACCCCCCATGATGAGATTGGTGACTTGCTCGAAGGCTTGGAGCACAATCTTCCCGATAGTCCTTTCGCATCTCCAACAAAGGCCGCTGGAGGGTACGCCTTGTCCGCCTTCCCCAATGGGACTAGCGAGGCCAATGGTTCCGATGCCCCAGCTGCAACCGCTAATATTAACGTGGCAAATTCCCTTCTTCCAGCGTCTTCCACCCTGGACATGGCATCCTTCAAGTCTTTAAACTGCCAAATTCCACGGTTGAACTCCGGCCACGGAGCCATAGGGATGTACGCCGGCACAGGAGCCGGGCCGAAATGCCCGGTTGGAACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

719

Amino Acids

77.15

Weight (kDa)

5.87

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 63 8.1e-34 AtC3H46 PABC domain
zf-CCCH PF00642 230 - 250 1e-05 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
AbsI CCTCGAGG 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 2 cut(s) 619, 857
AccI GTMKAC 2 cut(s) 82, 774
AclWI GGATC 5 cut(s) 34, 47, 542, 1017, 1032
AcoI YGGCCR 4 cut(s) 1110, 1254, 1657, 2089
AcsI RAATTY 5 cut(s) 46, 1013, 1509, 2008, 2070
AcuI CTGAAG 2 cut(s) 159, 932
AcyI GRCGYC 3 cut(s) 765, 899, 966
AfaI GTAC 5 cut(s) 920, 1190, 1381, 1925, 2111
AfiI CCNNNNNNNGG 8 cut(s) 49, 294, 473, 671, 672, 1237, 1920, 2041
AflII CTTAAG 1 cut(s) 1733
AflIII ACRYGT 1 cut(s) 1617
AgsI TTSAA 9 cut(s) 69, 1086, 1172, 1508, 1514, 1624, 1770, 2053, 2083
AjiI CACGTC 2 cut(s) 649, 1177
AjnI CCWGG 4 cut(s) 266, 335, 1632, 2034
AjuI GAANNNNNNNTTGG 4 cut(s) 307, 339, 1235, 1267
Alw21I GWGCWC 3 cut(s) 357, 1121, 1875
Alw26I GTCTC 9 cut(s) 536, 756, 862, 1144, 1229, 1374, 1398, 1614, 1823
AlwI GGATC 5 cut(s) 34, 47, 542, 1017, 1032
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 292
ApoI RAATTY 5 cut(s) 46, 1013, 1509, 2008, 2070
Asp700I GAANNNNTTC 3 cut(s) 144, 557, 837
AsuC2I CCSGG 4 cut(s) 1109, 1232, 2128, 2141
AsuHPI GGTGA 6 cut(s) 526, 1010, 1252, 1553, 1772, 1862
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 5 cut(s) 52, 476, 661, 826, 1427
BalI TGGCCA 1 cut(s) 1256
BamHI GGATCC 1 cut(s) 39
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 3 cut(s) 510, 1528, 2019
Bbv12I GWGCWC 3 cut(s) 357, 1121, 1875
BccI CCATC 4 cut(s) 403, 817, 988, 1522
BceAI ACGGC 5 cut(s) 469, 589, 752, 763, 793
BcgI CGANNNNNNTGC 2 cut(s) 615, 649
BciT130I CCWGG 4 cut(s) 268, 337, 1634, 2036
BcnI CCSGG 4 cut(s) 1109, 1232, 2128, 2141
BcoDI GTCTC 9 cut(s) 536, 756, 862, 1144, 1229, 1374, 1398, 1614, 1823
BfaI CTAG 4 cut(s) 1401, 1424, 1757, 1953
BfmI CTRYAG 3 cut(s) 733, 978, 1535
BfrI CTTAAG 1 cut(s) 1733
BglI GCCNNNNNGGC 2 cut(s) 974, 1809
BglII AGATCT 1 cut(s) 845
BlpI GCTNAGC 1 cut(s) 858
Bme1390I CCNGG 8 cut(s) 268, 337, 1109, 1232, 1634, 2036, 2128, 2141
Bme18I GGWCC 5 cut(s) 52, 476, 661, 826, 1427
BmeT110I CYCGRG 1 cut(s) 292
BmgBI CACGTC 2 cut(s) 649, 1177
BmrFI CCNGG 8 cut(s) 268, 337, 1109, 1232, 1634, 2036, 2128, 2141
BmrI ACTGGG 3 cut(s) 522, 1398, 1600
BmsI GCATC 9 cut(s) 1273, 1387, 1567, 1648, 1683, 1708, 1907, 1963, 2054
BmuI ACTGGG 3 cut(s) 522, 1398, 1600
BoxI GACNNNNGTC 2 cut(s) 456, 481
BpiI GAAGAC 3 cut(s) 510, 1528, 2019
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpmI CTGGAG 4 cut(s) 250, 1496, 1692, 1938
Bpu1102I GCTNAGC 1 cut(s) 858
BpuEI CTTGAG 4 cut(s) 19, 149, 836, 1434
BpuMI CCSGG 4 cut(s) 1109, 1232, 2128, 2141
BsaBI GATNNNNATC 1 cut(s) 1722
BsaHI GRCGYC 3 cut(s) 765, 899, 966
BsaI GGTCTC 2 cut(s) 1398, 1823
BsaJI CCNNGG 8 cut(s) 100, 327, 336, 571, 1430, 2034, 2075, 2092
BsaXI ACNNNNNCTCC 4 cut(s) 753, 783, 1594, 1624
Bsc4I CCNNNNNNNGG 8 cut(s) 49, 294, 473, 671, 672, 1237, 1920, 2041
Bse118I RCCGGY 2 cut(s) 1165, 2114
Bse1I ACTGG 4 cut(s) 522, 528, 1393, 1606
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 1722
BseBI CCWGG 4 cut(s) 268, 337, 1634, 2036
BseDI CCNNGG 8 cut(s) 100, 327, 336, 571, 1430, 2034, 2075, 2092
BseGI GGATG 8 cut(s) 418, 1209, 1402, 1440, 1639, 1723, 2045, 2112
BseJI GATNNNNATC 1 cut(s) 1722
BseLI CCNNNNNNNGG 8 cut(s) 49, 294, 473, 671, 672, 1237, 1920, 2041
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 7 cut(s) 370, 518, 651, 684, 872, 899, 1479
BseNI ACTGG 4 cut(s) 522, 528, 1393, 1606
BseRI GAGGAG 3 cut(s) 405, 1374, 1493
BseX3I CGGCCG 1 cut(s) 1110
BseYI CCCAGC 3 cut(s) 181, 1078, 1978
BsgI GTGCAG 1 cut(s) 1552
Bsh1285I CGRYCG 1 cut(s) 1113
BsiEI CGRYCG 1 cut(s) 1113
BsiHKAI GWGCWC 3 cut(s) 357, 1121, 1875
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 7 cut(s) 1109, 1166, 1232, 2088, 2115, 2127, 2141
BslFI GGGAC 3 cut(s) 489, 510, 1963
BslI CCNNNNNNNGG 8 cut(s) 49, 294, 473, 671, 672, 1237, 1920, 2041
BsmAI GTCTC 9 cut(s) 536, 756, 862, 1144, 1229, 1374, 1398, 1614, 1823
BsmBI CGTCTC 2 cut(s) 756, 1229
BsmFI GGGAC 3 cut(s) 489, 510, 1963
Bso31I GGTCTC 2 cut(s) 1398, 1823
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 3 cut(s) 357, 1121, 1875
Bsp143I GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
Bsp1720I GCTNAGC 1 cut(s) 858
Bsp19I CCATGG 1 cut(s) 100
BspCNI CTCAG 7 cut(s) 369, 517, 650, 683, 871, 898, 1480
BspHI TCATGA 1 cut(s) 1327
BspMAI CTGCAG 3 cut(s) 737, 982, 1539
BspPI GGATC 5 cut(s) 34, 47, 542, 1017, 1032
BspQI GCTCTTC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 1733
BspTNI GGTCTC 2 cut(s) 1398, 1823
BsrBI CCGCTC 2 cut(s) 619, 857
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 1165, 2114
BsrI ACTGG 4 cut(s) 522, 528, 1393, 1606
BssAI RCCGGY 2 cut(s) 1165, 2114
BssECI CCNNGG 8 cut(s) 100, 327, 336, 571, 1430, 2034, 2075, 2092
BssMI GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
BssNI GRCGYC 3 cut(s) 765, 899, 966
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 4 cut(s) 268, 337, 1634, 2036
Bst4CI ACNGT 3 cut(s) 1240, 1682, 2079
Bst6I CTCTTC 3 cut(s) 211, 289, 1193
BstACI GRCGYC 3 cut(s) 765, 899, 966
BstAFI CTTAAG 1 cut(s) 1733
BstAPI GCANNNNNTGC 2 cut(s) 986, 1718
BstDEI CTNAG 8 cut(s) 356, 504, 637, 670, 842, 858, 885, 1488
BstDSI CCRYGG 4 cut(s) 100, 571, 2075, 2092
BstF5I GGATG 8 cut(s) 418, 1209, 1402, 1440, 1639, 1723, 2045, 2112
BstKTI GATC 7 cut(s) 42, 550, 848, 1025, 1040, 1417, 1726
BstMAI GTCTC 9 cut(s) 536, 756, 862, 1144, 1229, 1374, 1398, 1614, 1823
BstMBI GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
BstMCI CGRYCG 1 cut(s) 1113
BstNI CCWGG 4 cut(s) 268, 337, 1634, 2036
BstNSI RCATGY 1 cut(s) 1621
BstPAI GACNNNNGTC 2 cut(s) 456, 481
BstSCI CCNGG 8 cut(s) 266, 335, 1107, 1230, 1632, 2034, 2126, 2139
BstSFI CTRYAG 3 cut(s) 733, 978, 1535
BstV2I GAAGAC 3 cut(s) 510, 1528, 2019
BstX2I RGATCY 3 cut(s) 39, 845, 1037
BstYI RGATCY 3 cut(s) 39, 845, 1037
BstZI CGGCCG 1 cut(s) 1110
BtgI CCRYGG 4 cut(s) 100, 571, 2075, 2092
BtrI CACGTC 2 cut(s) 649, 1177
BtsCI GGATG 8 cut(s) 418, 1209, 1402, 1440, 1639, 1723, 2045, 2112
BtsI GCAGTG 3 cut(s) 1564, 1719, 1801
BtsIMutI CAGTG 3 cut(s) 1564, 1719, 1801
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 1 cut(s) 1327
Cfr10I RCCGGY 2 cut(s) 1165, 2114
CseI GACGC 4 cut(s) 773, 888, 974, 2013
CsiI ACCWGGT 1 cut(s) 1632
Csp6I GTAC 5 cut(s) 919, 1189, 1380, 1924, 2110
CspCI CAANNNNNGTGG 2 cut(s) 1801, 1836
CviAII CATG 9 cut(s) 76, 101, 892, 934, 1328, 1618, 1702, 1838, 2041
CviQI GTAC 5 cut(s) 919, 1189, 1380, 1924, 2110
DdeI CTNAG 8 cut(s) 356, 504, 637, 670, 842, 858, 885, 1488
DpnI GATC 7 cut(s) 41, 549, 847, 1024, 1039, 1416, 1725
DpnII GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
DraI TTTAAA 1 cut(s) 2061
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 4 cut(s) 1110, 1254, 1657, 2089
EagI CGGCCG 1 cut(s) 1110
Eam1104I CTCTTC 3 cut(s) 211, 289, 1193
EarI CTCTTC 3 cut(s) 211, 289, 1193
EciI GGCGGA 3 cut(s) 277, 450, 1924
Ecl136II GAGCTC 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 1110
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 2 cut(s) 1398, 1823
Eco47I GGWCC 5 cut(s) 52, 476, 661, 826, 1427
Eco52I CGGCCG 1 cut(s) 1110
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 159, 932
Eco88I CYCGRG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 2 cut(s) 476, 661
EcoRII CCWGG 4 cut(s) 266, 335, 1632, 2034
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 756, 1229
FaeI CATG 9 cut(s) 79, 104, 895, 937, 1331, 1621, 1705, 1841, 2044
FalI AAGNNNNNCTT 6 cut(s) 112, 144, 825, 857, 1235, 1267
FaqI GGGAC 3 cut(s) 489, 510, 1963
FatI CATG 9 cut(s) 75, 100, 891, 933, 1327, 1617, 1701, 1837, 2040
FauI CCCGC 4 cut(s) 746, 1034, 1052, 1057
FblI GTMKAC 2 cut(s) 82, 774
FokI GGATG 8 cut(s) 425, 1216, 1409, 1447, 1626, 1730, 2032, 2119
FriOI GRGCYC 1 cut(s) 357
FspBI CTAG 4 cut(s) 1401, 1424, 1757, 1953
GsaI CCCAGC 3 cut(s) 185, 1082, 1982
GsuI CTGGAG 4 cut(s) 250, 1496, 1692, 1938
HapII CCGG 7 cut(s) 1109, 1166, 1232, 2088, 2115, 2127, 2141
HgaI GACGC 4 cut(s) 773, 888, 974, 2013
Hin1I GRCGYC 3 cut(s) 765, 899, 966
Hin1II CATG 9 cut(s) 79, 104, 895, 937, 1331, 1621, 1705, 1841, 2044
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 2 cut(s) 141, 812
HinfI GANTC 6 cut(s) 5, 738, 1182, 1212, 1591, 1705
HpaII CCGG 7 cut(s) 1109, 1166, 1232, 2088, 2115, 2127, 2141
HphI GGTGA 6 cut(s) 526, 1010, 1252, 1553, 1772, 1862
Hpy166II GTNNAC 7 cut(s) 83, 775, 785, 1075, 1228, 1382, 1651
Hpy188III TCNNGA 5 cut(s) 1172, 1328, 1451, 1552, 1883
Hpy8I GTNNAC 7 cut(s) 83, 775, 785, 1075, 1228, 1382, 1651
Hpy99I CGWCG 6 cut(s) 455, 630, 650, 773, 776, 779
HpyCH4III ACNGT 3 cut(s) 1240, 1682, 2079
HpyCH4IV ACGT 3 cut(s) 648, 1176, 2001
HpyF3I CTNAG 8 cut(s) 356, 504, 637, 670, 842, 858, 885, 1488
HpySE526I ACGT 3 cut(s) 648, 1176, 2001
Hsp92I GRCGYC 3 cut(s) 765, 899, 966
Hsp92II CATG 9 cut(s) 79, 104, 895, 937, 1331, 1621, 1705, 1841, 2044
KflI GGGWCCC 1 cut(s) 476
KroI GCCGGC 1 cut(s) 2114
KroNI GCCGGC 1 cut(s) 2116
Kzo9I GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
LguI GCTCTTC 1 cut(s) 289
LmnI GCTCC 8 cut(s) 178, 429, 624, 725, 1480, 1870, 2096, 2123
LweI GCATC 9 cut(s) 1273, 1387, 1567, 1648, 1683, 1708, 1907, 1963, 2054
MabI ACCWGGT 1 cut(s) 1632
MaeI CTAG 4 cut(s) 1401, 1424, 1757, 1953
MaeII ACGT 3 cut(s) 648, 1176, 2001
MaeIII GTNAC 2 cut(s) 1216, 1850
MalI GATC 7 cut(s) 41, 549, 847, 1024, 1039, 1416, 1725
MbiI CCGCTC 2 cut(s) 619, 857
MboI GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
MfeI CAATTG 1 cut(s) 1770
MflI RGATCY 3 cut(s) 39, 845, 1037
MhlI GDGCHC 3 cut(s) 357, 1121, 1875
MlsI TGGCCA 1 cut(s) 1256
MluCI AATT 8 cut(s) 24, 46, 583, 1013, 1509, 1770, 2008, 2070
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 1 cut(s) 1699
MmeI TCCRAC 5 cut(s) 422, 534, 1444, 1928, 2125
Mox20I TGGCCA 1 cut(s) 1256
MroNI GCCGGC 1 cut(s) 2114
MroXI GAANNNNTTC 3 cut(s) 144, 557, 837
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 4 cut(s) 447, 1734, 1998, 2060
MslI CAYNNNNRTG 1 cut(s) 2105
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 9 cut(s) 436, 732, 986, 1656, 1729, 1745, 1751, 1916, 1982
MspCI CTTAAG 1 cut(s) 1733
MspI CCGG 7 cut(s) 1109, 1166, 1232, 2088, 2115, 2127, 2141
MspR9I CCNGG 8 cut(s) 268, 337, 1109, 1232, 1634, 2036, 2128, 2141
MunI CAATTG 1 cut(s) 1770
MvaI CCWGG 4 cut(s) 268, 337, 1634, 2036
NaeI GCCGGC 1 cut(s) 2116
NciI CCSGG 4 cut(s) 1109, 1232, 2128, 2141
NcoI CCATGG 1 cut(s) 100
NdeII GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
NgoMIV GCCGGC 1 cut(s) 2114
NlaIII CATG 9 cut(s) 79, 104, 895, 937, 1331, 1621, 1705, 1841, 2044
NmeAIII GCCGAG 3 cut(s) 308, 831, 1138
NmuCI GTSAC 1 cut(s) 1850
NspI RCATGY 1 cut(s) 1621
PaeR7I CTCGAG 1 cut(s) 292
PagI TCATGA 1 cut(s) 1327
PciI ACATGT 1 cut(s) 1617
PciSI GCTCTTC 1 cut(s) 289
PcsI WCGNNNNNNNCGW 3 cut(s) 771, 1038, 1221
PdiI GCCGGC 1 cut(s) 2116
PdmI GAANNNNTTC 3 cut(s) 144, 557, 837
PfeI GAWTC 5 cut(s) 5, 738, 1182, 1212, 1591
PflFI GACNNNGTC 1 cut(s) 767
PflMI CCANNNNNTGG 1 cut(s) 49
PleI GAGTC 1 cut(s) 1699
PpsI GAGTC 1 cut(s) 1699
PpuMI RGGWCCY 2 cut(s) 476, 661
PscI ACATGT 1 cut(s) 1617
PshAI GACNNNNGTC 2 cut(s) 456, 481
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 2 cut(s) 476, 661
Psp6I CCWGG 4 cut(s) 266, 335, 1632, 2034
PspFI CCCAGC 3 cut(s) 181, 1078, 1978
PspGI CCWGG 4 cut(s) 266, 335, 1632, 2034
PspPPI RGGWCCY 2 cut(s) 476, 661
PspXI VCTCGAGB 1 cut(s) 292
PstI CTGCAG 3 cut(s) 737, 982, 1539
PstNI CAGNNNCTG 1 cut(s) 986
PsuI RGATCY 3 cut(s) 39, 845, 1037
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 6 cut(s) 436, 732, 986, 1729, 1745, 1982
RsaI GTAC 5 cut(s) 920, 1190, 1381, 1925, 2111
RsaNI GTAC 5 cut(s) 919, 1189, 1380, 1924, 2110
RseI CAYNNNNRTG 1 cut(s) 2105
SacI GAGCTC 1 cut(s) 357
SalI GTCGAC 1 cut(s) 773
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 4 cut(s) 447, 1734, 1998, 2060
Sau3AI GATC 7 cut(s) 39, 547, 845, 1022, 1037, 1414, 1723
SchI GAGTC 1 cut(s) 1699
ScrFI CCNGG 8 cut(s) 268, 337, 1109, 1232, 1634, 2036, 2128, 2141
SduI GDGCHC 3 cut(s) 357, 1121, 1875
SexAI ACCWGGT 1 cut(s) 1632
SfaNI GCATC 9 cut(s) 1273, 1387, 1567, 1648, 1683, 1708, 1907, 1963, 2054
SfcI CTRYAG 3 cut(s) 733, 978, 1535
Sfr274I CTCGAG 1 cut(s) 292
SgrDI CGTCGACG 1 cut(s) 773
SinI GGWCC 5 cut(s) 52, 476, 661, 826, 1427
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 2105
SmlI CTYRAG 6 cut(s) 34, 164, 292, 815, 1449, 1733
SmoI CTYRAG 6 cut(s) 34, 164, 292, 815, 1449, 1733
Sse9I AATT 8 cut(s) 24, 46, 583, 1013, 1509, 1770, 2008, 2070
SspI AATATT 1 cut(s) 1996
SspMI CTAG 4 cut(s) 1401, 1424, 1757, 1953
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 8 cut(s) 266, 335, 1107, 1230, 1632, 2034, 2126, 2139
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 1240, 1682, 2079
TaiI ACGT 3 cut(s) 651, 1179, 2004
TaqI TCGA 7 cut(s) 200, 293, 774, 1032, 1049, 1519, 1860
TaqII GACCGA 2 cut(s) 145, 1444
TasI AATT 8 cut(s) 24, 46, 583, 1013, 1509, 1770, 2008, 2070
TauI GCSGC 6 cut(s) 619, 753, 899, 1659, 1751, 1916
TfiI GAWTC 5 cut(s) 5, 738, 1182, 1212, 1591
Tru1I TTAA 4 cut(s) 447, 1734, 1998, 2060
Tru9I TTAA 4 cut(s) 447, 1734, 1998, 2060
TscAI CASTG 3 cut(s) 1571, 1719, 1801
TseFI GTSAC 1 cut(s) 1850
Tsp45I GTSAC 1 cut(s) 1850
TspDTI ATGAA 4 cut(s) 950, 1067, 1316, 1344
TspGWI ACGGA 2 cut(s) 738, 2109
TspRI CASTG 3 cut(s) 1571, 1719, 1801
Tth111I GACNNNGTC 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 1733
VpaK11BI GGWCC 5 cut(s) 52, 476, 661, 826, 1427
XapI RAATTY 5 cut(s) 46, 1013, 1509, 2008, 2070
XceI RCATGY 1 cut(s) 1621
XcmI CCANNNNNNNNNTGG 2 cut(s) 1844, 2038
XhoI CTCGAG 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 82, 774
XmnI GAANNNNTTC 3 cut(s) 144, 557, 837
XspI CTAG 4 cut(s) 1401, 1424, 1757, 1953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.