Zinc finger (CCCH-type) family protein RNA recognition motif (RRM)-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1110 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1605 |
| AatII | GACGTC | 1 cut(s) | 1206 |
| Acc65I | GGTACC | 1 cut(s) | 580 |
| AccB1I | GGYRCC | 1 cut(s) | 580 |
| AccBSI | CCGCTC | 1 cut(s) | 1424 |
| AciI | CCGC | 2 cut(s) | 393, 1422 |
| AclWI | GGATC | 3 cut(s) | 1357, 1474, 1479 |
| AcuI | CTGAAG | 2 cut(s) | 820, 1151 |
| AcyI | GRCGYC | 1 cut(s) | 1203 |
| AdeI | CACNNNGTG | 1 cut(s) | 961 |
| AfaI | GTAC | 4 cut(s) | 361, 582, 841, 914 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 804, 1574, 1592 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1321, 1353 |
| Alw21I | GWGCWC | 2 cut(s) | 33, 336 |
| Alw26I | GTCTC | 5 cut(s) | 134, 191, 210, 721, 914 |
| AlwI | GGATC | 3 cut(s) | 1357, 1474, 1479 |
| AoxI | GGCC | 1 cut(s) | 1063 |
| ApeKI | GCWGC | 7 cut(s) | 399, 501, 655, 677, 680, 683, 1192 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 304, 1155, 1214, 1256 |
| Asp718I | GGTACC | 1 cut(s) | 580 |
| AspA2I | CCTAGG | 1 cut(s) | 1079 |
| AspS9I | GGNCC | 3 cut(s) | 134, 848, 1598 |
| AsuC2I | CCSGG | 1 cut(s) | 1587 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 440, 590 |
| AsuNHI | GCTAGC | 2 cut(s) | 124, 497 |
| AvaII | GGWCC | 3 cut(s) | 134, 848, 1598 |
| AvrII | CCTAGG | 1 cut(s) | 1079 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BanI | GGYRCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 2 cut(s) | 336, 377 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| Bbv12I | GWGCWC | 2 cut(s) | 33, 336 |
| BbvI | GCAGC | 7 cut(s) | 386, 488, 664, 667, 667, 670, 1204 |
| BccI | CCATC | 3 cut(s) | 515, 717, 1307 |
| BciVI | GTATCC | 1 cut(s) | 861 |
| BclI | TGATCA | 1 cut(s) | 1296 |
| BcnI | CCSGG | 1 cut(s) | 1587 |
| BcoDI | GTCTC | 5 cut(s) | 134, 191, 210, 721, 914 |
| BfaI | CTAG | 9 cut(s) | 21, 36, 125, 309, 474, 498, 1074, 1080, 1091 |
| BfmI | CTRYAG | 2 cut(s) | 502, 1190 |
| BfuI | GTATCC | 1 cut(s) | 861 |
| BglII | AGATCT | 2 cut(s) | 302, 777 |
| BisI | GCNGC | 7 cut(s) | 400, 502, 656, 678, 681, 684, 1193 |
| BlnI | CCTAGG | 1 cut(s) | 1079 |
| BlsI | GCNGC | 7 cut(s) | 401, 503, 657, 679, 682, 685, 1194 |
| BmcAI | AGTACT | 2 cut(s) | 361, 841 |
| Bme1390I | CCNGG | 1 cut(s) | 1587 |
| Bme18I | GGWCC | 3 cut(s) | 134, 848, 1598 |
| BmgT120I | GGNCC | 3 cut(s) | 134, 848, 1598 |
| BmiI | GGNNCC | 2 cut(s) | 544, 582 |
| BmrFI | CCNGG | 1 cut(s) | 1587 |
| BmsI | GCATC | 2 cut(s) | 74, 1424 |
| BmtI | GCTAGC | 2 cut(s) | 128, 501 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| BpmI | CTGGAG | 1 cut(s) | 337 |
| BpuEI | CTTGAG | 1 cut(s) | 1104 |
| BpuMI | CCSGG | 1 cut(s) | 1587 |
| BsaHI | GRCGYC | 1 cut(s) | 1203 |
| BsaI | GGTCTC | 3 cut(s) | 191, 210, 721 |
| BsaJI | CCNNGG | 4 cut(s) | 209, 250, 1079, 1559 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 804, 1574, 1592 |
| Bse118I | RCCGGY | 1 cut(s) | 1567 |
| Bse1I | ACTGG | 1 cut(s) | 851 |
| BseDI | CCNNGG | 4 cut(s) | 209, 250, 1079, 1559 |
| BseGI | GGATG | 2 cut(s) | 10, 346 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 804, 1574, 1592 |
| BseMII | CTCAG | 1 cut(s) | 909 |
| BseNI | ACTGG | 1 cut(s) | 851 |
| BseRI | GAGGAG | 3 cut(s) | 540, 1150, 1332 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BseXI | GCAGC | 7 cut(s) | 386, 488, 664, 667, 667, 670, 1204 |
| BshFI | GGCC | 1 cut(s) | 1065 |
| BshNI | GGYRCC | 1 cut(s) | 580 |
| BsiHKAI | GWGCWC | 2 cut(s) | 33, 336 |
| BsiSI | CCGG | 2 cut(s) | 1568, 1587 |
| BslFI | GGGAC | 3 cut(s) | 995, 1039, 1097 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 804, 1574, 1592 |
| BsmAI | GTCTC | 5 cut(s) | 134, 191, 210, 721, 914 |
| BsmFI | GGGAC | 3 cut(s) | 995, 1039, 1097 |
| BsmI | GAATGC | 1 cut(s) | 933 |
| BsnI | GGCC | 1 cut(s) | 1065 |
| Bso31I | GGTCTC | 3 cut(s) | 191, 210, 721 |
| Bsp1286I | GDGCHC | 4 cut(s) | 33, 336, 377, 459 |
| Bsp143I | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| BspACI | CCGC | 2 cut(s) | 393, 1422 |
| BspANI | GGCC | 1 cut(s) | 1065 |
| BspCNI | CTCAG | 1 cut(s) | 910 |
| BspHI | TCATGA | 2 cut(s) | 189, 606 |
| BspLI | GGNNCC | 2 cut(s) | 544, 582 |
| BspMAI | CTGCAG | 2 cut(s) | 506, 1194 |
| BspOI | GCTAGC | 2 cut(s) | 128, 501 |
| BspPI | GGATC | 3 cut(s) | 1357, 1474, 1479 |
| BspQI | GCTCTTC | 2 cut(s) | 262, 622 |
| BspT107I | GGYRCC | 1 cut(s) | 580 |
| BspTNI | GGTCTC | 3 cut(s) | 191, 210, 721 |
| BsrBI | CCGCTC | 1 cut(s) | 1424 |
| BsrFI | RCCGGY | 1 cut(s) | 1567 |
| BsrI | ACTGG | 1 cut(s) | 851 |
| BssAI | RCCGGY | 1 cut(s) | 1567 |
| BssECI | CCNNGG | 4 cut(s) | 209, 250, 1079, 1559 |
| BssMI | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| BssNI | GRCGYC | 1 cut(s) | 1203 |
| BssT1I | CCWWGG | 2 cut(s) | 1079, 1559 |
| Bst4CI | ACNGT | 8 cut(s) | 104, 197, 251, 413, 518, 803, 925, 1053 |
| Bst6I | CTCTTC | 3 cut(s) | 262, 622, 1146 |
| BstACI | GRCGYC | 1 cut(s) | 1203 |
| BstC8I | GCNNGC | 5 cut(s) | 126, 384, 499, 1397, 1422 |
| BstDEI | CTNAG | 4 cut(s) | 49, 240, 566, 918 |
| BstDSI | CCRYGG | 2 cut(s) | 209, 250 |
| BstEII | GGTNACC | 1 cut(s) | 1563 |
| BstF5I | GGATG | 2 cut(s) | 10, 346 |
| BstKTI | GATC | 9 cut(s) | 75, 100, 305, 745, 780, 1299, 1352, 1469, 1474 |
| BstMAI | GTCTC | 5 cut(s) | 134, 191, 210, 721, 914 |
| BstMBI | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 399, 549, 683, 764, 1421, 1451 |
| BstNSI | RCATGY | 1 cut(s) | 386 |
| BstPI | GGTNACC | 1 cut(s) | 1563 |
| BstSCI | CCNGG | 1 cut(s) | 1585 |
| BstSFI | CTRYAG | 2 cut(s) | 502, 1190 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BstV1I | GCAGC | 7 cut(s) | 386, 488, 664, 667, 667, 670, 1204 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BstX2I | RGATCY | 4 cut(s) | 302, 777, 1349, 1471 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 521 |
| BstYI | RGATCY | 4 cut(s) | 302, 777, 1349, 1471 |
| BsuI | GTATCC | 1 cut(s) | 861 |
| BsuRI | GGCC | 1 cut(s) | 1065 |
| BtgI | CCRYGG | 2 cut(s) | 209, 250 |
| BtgZI | GCGATG | 1 cut(s) | 1401 |
| BtsCI | GGATG | 2 cut(s) | 10, 346 |
| BtsIMutI | CAGTG | 1 cut(s) | 523 |
| Cac8I | GCNNGC | 5 cut(s) | 126, 384, 499, 1397, 1422 |
| CciI | TCATGA | 2 cut(s) | 189, 606 |
| Cfr10I | RCCGGY | 1 cut(s) | 1567 |
| Cfr13I | GGNCC | 3 cut(s) | 134, 848, 1598 |
| Csp6I | GTAC | 4 cut(s) | 360, 581, 840, 913 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1269, 1304 |
| CviAII | CATG | 5 cut(s) | 76, 190, 337, 383, 607 |
| CviQI | GTAC | 4 cut(s) | 360, 581, 840, 913 |
| DdeI | CTNAG | 4 cut(s) | 49, 240, 566, 918 |
| DpnI | GATC | 9 cut(s) | 74, 99, 304, 744, 779, 1298, 1351, 1468, 1473 |
| DpnII | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| DraIII | CACNNNGTG | 1 cut(s) | 961 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1605 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1605 |
| Eam1104I | CTCTTC | 3 cut(s) | 262, 622, 1146 |
| EarI | CTCTTC | 3 cut(s) | 262, 622, 1146 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco130I | CCWWGG | 2 cut(s) | 1079, 1559 |
| Eco147I | AGGCCT | 1 cut(s) | 1065 |
| Eco24I | GRGCYC | 2 cut(s) | 336, 377 |
| Eco31I | GGTCTC | 3 cut(s) | 191, 210, 721 |
| Eco47I | GGWCC | 3 cut(s) | 134, 848, 1598 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 2 cut(s) | 820, 1151 |
| Eco91I | GGTNACC | 1 cut(s) | 1563 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoO65I | GGTNACC | 1 cut(s) | 1563 |
| EcoT14I | CCWWGG | 2 cut(s) | 1079, 1559 |
| EcoT38I | GRGCYC | 2 cut(s) | 336, 377 |
| ErhI | CCWWGG | 2 cut(s) | 1079, 1559 |
| FaeI | CATG | 5 cut(s) | 79, 193, 340, 386, 610 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 112, 144, 1143, 1175 |
| FaqI | GGGAC | 3 cut(s) | 995, 1039, 1097 |
| FatI | CATG | 5 cut(s) | 75, 189, 336, 382, 606 |
| FauI | CCCGC | 1 cut(s) | 1429 |
| FbaI | TGATCA | 1 cut(s) | 1296 |
| Fnu4HI | GCNGC | 7 cut(s) | 400, 502, 656, 678, 681, 684, 1193 |
| FokI | GGATG | 2 cut(s) | 17, 353 |
| FriOI | GRGCYC | 2 cut(s) | 336, 377 |
| Fsp4HI | GCNGC | 7 cut(s) | 400, 502, 656, 678, 681, 684, 1193 |
| FspBI | CTAG | 9 cut(s) | 21, 36, 125, 309, 474, 498, 1074, 1080, 1091 |
| GluI | GCNGC | 7 cut(s) | 400, 502, 656, 678, 681, 684, 1193 |
| GsuI | CTGGAG | 1 cut(s) | 337 |
| HaeIII | GGCC | 1 cut(s) | 1065 |
| HapII | CCGG | 2 cut(s) | 1568, 1587 |
| Hin1I | GRCGYC | 1 cut(s) | 1203 |
| Hin1II | CATG | 5 cut(s) | 79, 193, 340, 386, 610 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HindIII | AAGCTT | 2 cut(s) | 46, 713 |
| HpaI | GTTAAC | 1 cut(s) | 649 |
| HpaII | CCGG | 2 cut(s) | 1568, 1587 |
| HphI | GGTGA | 3 cut(s) | 116, 440, 590 |
| Hpy166II | GTNNAC | 5 cut(s) | 151, 514, 649, 913, 1598 |
| Hpy188I | TCNGA | 8 cut(s) | 436, 786, 1170, 1251, 1354, 1471, 1492, 1528 |
| Hpy8I | GTNNAC | 5 cut(s) | 151, 514, 649, 913, 1598 |
| HpyAV | CCTTC | 7 cut(s) | 98, 636, 1170, 1340, 1494, 1524, 1543 |
| HpyCH4III | ACNGT | 8 cut(s) | 104, 197, 251, 413, 518, 803, 925, 1053 |
| HpyCH4IV | ACGT | 2 cut(s) | 1086, 1203 |
| HpyCH4V | TGCA | 7 cut(s) | 382, 486, 504, 655, 709, 1192, 1415 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 399, 549, 683, 764, 1421, 1451 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 240, 566, 918 |
| HpySE526I | ACGT | 2 cut(s) | 1086, 1203 |
| Hsp92I | GRCGYC | 1 cut(s) | 1203 |
| Hsp92II | CATG | 5 cut(s) | 79, 193, 340, 386, 610 |
| KpnI | GGTACC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 1 cut(s) | 1296 |
| KspAI | GTTAAC | 1 cut(s) | 649 |
| Kzo9I | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| LguI | GCTCTTC | 2 cut(s) | 262, 622 |
| LmnI | GCTCC | 3 cut(s) | 494, 527, 548 |
| Lsp1109I | GCAGC | 7 cut(s) | 386, 488, 664, 667, 667, 670, 1204 |
| LweI | GCATC | 2 cut(s) | 74, 1424 |
| MaeI | CTAG | 9 cut(s) | 21, 36, 125, 309, 474, 498, 1074, 1080, 1091 |
| MaeII | ACGT | 2 cut(s) | 1086, 1203 |
| MaeIII | GTNAC | 3 cut(s) | 901, 1563, 1581 |
| MalI | GATC | 9 cut(s) | 74, 99, 304, 744, 779, 1298, 1351, 1468, 1473 |
| MbiI | CCGCTC | 1 cut(s) | 1424 |
| MboI | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| MflI | RGATCY | 4 cut(s) | 302, 777, 1349, 1471 |
| MhlI | GDGCHC | 4 cut(s) | 33, 336, 377, 459 |
| MluCI | AATT | 4 cut(s) | 704, 829, 1225, 1504 |
| MlyI | GAGTC | 4 cut(s) | 136, 223, 604, 1523 |
| MmeI | TCCRAC | 3 cut(s) | 1243, 1365, 1551 |
| MroXI | GAANNNNTTC | 4 cut(s) | 304, 1155, 1214, 1256 |
| MseI | TTAA | 3 cut(s) | 317, 648, 927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 222, 519 |
| MspI | CCGG | 2 cut(s) | 1568, 1587 |
| MspR9I | CCNGG | 1 cut(s) | 1587 |
| Mva1269I | GAATGC | 1 cut(s) | 933 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 399, 549, 683, 764, 1421, 1451 |
| NciI | CCSGG | 1 cut(s) | 1587 |
| NdeII | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| NheI | GCTAGC | 2 cut(s) | 124, 497 |
| NlaIII | CATG | 5 cut(s) | 79, 193, 340, 386, 610 |
| NlaIV | GGNNCC | 2 cut(s) | 544, 582 |
| NmuCI | GTSAC | 1 cut(s) | 901 |
| NspI | RCATGY | 1 cut(s) | 386 |
| PaeI | GCATGC | 1 cut(s) | 386 |
| PagI | TCATGA | 2 cut(s) | 189, 606 |
| PceI | AGGCCT | 1 cut(s) | 1065 |
| PciSI | GCTCTTC | 2 cut(s) | 262, 622 |
| PctI | GAATGC | 1 cut(s) | 933 |
| PdmI | GAANNNNTTC | 4 cut(s) | 304, 1155, 1214, 1256 |
| PkrI | GCNGC | 7 cut(s) | 401, 503, 657, 679, 682, 685, 1194 |
| PleI | GAGTC | 4 cut(s) | 136, 222, 604, 1523 |
| PpsI | GAGTC | 4 cut(s) | 136, 222, 604, 1523 |
| PsiI | TTATAA | 1 cut(s) | 1110 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| PspEI | GGTNACC | 1 cut(s) | 1563 |
| PspN4I | GGNNCC | 2 cut(s) | 544, 582 |
| PspPI | GGNCC | 3 cut(s) | 134, 848, 1598 |
| PstI | CTGCAG | 2 cut(s) | 506, 1194 |
| PsuI | RGATCY | 4 cut(s) | 302, 777, 1349, 1471 |
| RsaI | GTAC | 4 cut(s) | 361, 582, 841, 914 |
| RsaNI | GTAC | 4 cut(s) | 360, 581, 840, 913 |
| RseI | CAYNNNNRTG | 2 cut(s) | 222, 519 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SapI | GCTCTTC | 2 cut(s) | 262, 622 |
| SaqAI | TTAA | 3 cut(s) | 317, 648, 927 |
| SatI | GCNGC | 7 cut(s) | 400, 502, 656, 678, 681, 684, 1193 |
| Sau3AI | GATC | 9 cut(s) | 72, 97, 302, 742, 777, 1296, 1349, 1466, 1471 |
| Sau96I | GGNCC | 3 cut(s) | 134, 848, 1598 |
| ScaI | AGTACT | 2 cut(s) | 361, 841 |
| SchI | GAGTC | 4 cut(s) | 136, 223, 604, 1523 |
| ScrFI | CCNGG | 1 cut(s) | 1587 |
| SduI | GDGCHC | 4 cut(s) | 33, 336, 377, 459 |
| SfaNI | GCATC | 2 cut(s) | 74, 1424 |
| SfcI | CTRYAG | 2 cut(s) | 502, 1190 |
| SinI | GGWCC | 3 cut(s) | 134, 848, 1598 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 222, 519 |
| SmlI | CTYRAG | 1 cut(s) | 1119 |
| SmoI | CTYRAG | 1 cut(s) | 1119 |
| SphI | GCATGC | 1 cut(s) | 386 |
| Sse9I | AATT | 4 cut(s) | 704, 829, 1225, 1504 |
| SseBI | AGGCCT | 1 cut(s) | 1065 |
| SsiI | CCGC | 2 cut(s) | 393, 1422 |
| SspMI | CTAG | 9 cut(s) | 21, 36, 125, 309, 474, 498, 1074, 1080, 1091 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| StuI | AGGCCT | 1 cut(s) | 1065 |
| StyD4I | CCNGG | 1 cut(s) | 1585 |
| StyI | CCWWGG | 2 cut(s) | 1079, 1559 |
| TaaI | ACNGT | 8 cut(s) | 104, 197, 251, 413, 518, 803, 925, 1053 |
| TaiI | ACGT | 2 cut(s) | 1089, 1206 |
| TaqI | TCGA | 2 cut(s) | 330, 558 |
| TasI | AATT | 4 cut(s) | 704, 829, 1225, 1504 |
| TatI | WGTACW | 2 cut(s) | 359, 839 |
| Tru1I | TTAA | 3 cut(s) | 317, 648, 927 |
| Tru9I | TTAA | 3 cut(s) | 317, 648, 927 |
| TscAI | CASTG | 1 cut(s) | 523 |
| TseFI | GTSAC | 1 cut(s) | 901 |
| TseI | GCWGC | 7 cut(s) | 399, 501, 655, 677, 680, 683, 1192 |
| Tsp45I | GTSAC | 1 cut(s) | 901 |
| TspDTI | ATGAA | 7 cut(s) | 27, 206, 362, 595, 717, 1199, 1382 |
| TspGWI | ACGGA | 5 cut(s) | 198, 507, 1282, 1398, 1479 |
| TspRI | CASTG | 1 cut(s) | 523 |
| VpaK11BI | GGWCC | 3 cut(s) | 134, 848, 1598 |
| XbaI | TCTAGA | 1 cut(s) | 35 |
| XceI | RCATGY | 1 cut(s) | 386 |
| XmaJI | CCTAGG | 1 cut(s) | 1079 |
| XmnI | GAANNNNTTC | 4 cut(s) | 304, 1155, 1214, 1256 |
| XspI | CTAG | 9 cut(s) | 21, 36, 125, 309, 474, 498, 1074, 1080, 1091 |
| ZraI | GACGTC | 1 cut(s) | 1204 |
| ZrmI | AGTACT | 2 cut(s) | 361, 841 |