pycom03g12890

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001189
Physical Location & Seq
Reverse (-)
13722442 .. 13724267
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12890.6

Sequence Viewer

Length: 1056 bp
ATGAAGTTCACAAGTTTGGGAGATACCAACATGATCGATCTGGAAAACAATCAAAACGATTTTTCGACTTTAAATTTGGGAGGAAATGTCAATCACAGTTCAAGGCAGATCTACTTGACATTTCCAGCTGATAGTACATTTCGAGAAGAAGATGTCTCTAATTATTTTAGCATTTATGGACCAGTGCAAGATGTGAGGATTCCATACCAGCAAAAGAGGATGTTTGGATTTGTTACATTCGTCTACTCCGAGACTGTGAAGATCATTTTGGCGAAAGGGAATCCTCATTTCGTATGCGATTCTCGGGTGCTTGTGAAGCCTTACAAGGAGAAGGGCAAAATCCCAGACAAGAAGCAACAACACCAACAGTTTGAGAGGGAAGACTACCATCTGTGTAGAAGCCTGTCCGCGATCGATTCGAGAGAGCATTATGATCTCAATCCTGGATCAAGAACGTTTTACAATACACAAGACATGCTTTTGAGAAGGAAATTAGAGGACCAGGCTAAGTTGCAGCAAGCCATTGAAATCCAAGAAAGGAGACTTATGAACCTCCAACTTCTAGGCATCAAACCCAACAATCTTCATCATCAGAATCAGTACTACAATGGTTTATCAGAAGGGTCTCCATTTCCTTCACCCACTTTGTCACATGCATCCAAAAATCAATCCTTCAATTTTTCACCTAGAGGCAATAATGAAGAAGTCCCACAAGAATACGATGAAGCTGAAAAACTGCAGCAGGAGATGAATCCAACTTTTAATCATGAAAATGAAGATAACAATGGCGATGATTTTAGCCTGCATGAAAGTATGGAGCACATTCTCCCTGATAGCCTATTTGCATCTCCAAAGAAATCAGCTGCTGGAGACCAAATAAATGTCTTCTCAACTACTGCTTCTGCACAAGTCAATACTGAAAGCTTCACCAGAACCACCACCATTTCTTCTAACAATATTAATGATAATTTACTGCCCACCACTTCTACCCCAAATGCAGATTCGCCAAAATCTGTTCTTTCCAAATGTCCAGGTTTTCTTTTGGAATGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

352

Amino Acids

40.05

Weight (kDa)

5.49

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 410
AciI CCGC 1 cut(s) 408
AclI AACGTT 1 cut(s) 455
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 2 cut(s) 136, 602
AgsI TTSAA 3 cut(s) 102, 527, 676
AjnI CCWGG 3 cut(s) 442, 501, 1030
AjuI GAANNNNNNNTTGG 4 cut(s) 251, 283, 985, 1017
AluBI AGCT 4 cut(s) 128, 728, 863, 924
AluI AGCT 4 cut(s) 128, 728, 863, 924
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 5 cut(s) 160, 245, 535, 630, 864
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 514, 739, 863
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AseI ATTAAT 1 cut(s) 960
AspS9I GGNCC 2 cut(s) 179, 499
AsuHPI GGTGA 3 cut(s) 630, 675, 919
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 2 cut(s) 179, 499
BbsI GAAGAC 2 cut(s) 387, 877
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 3 cut(s) 526, 751, 850
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 3 cut(s) 444, 503, 1032
BcoDI GTCTC 5 cut(s) 160, 245, 535, 630, 864
BfaI CTAG 2 cut(s) 563, 687
BfmI CTRYAG 1 cut(s) 737
BglII AGATCT 1 cut(s) 108
BisI GCNGC 3 cut(s) 515, 740, 864
BlsI GCNGC 3 cut(s) 516, 741, 865
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 444, 503, 1032
Bme18I GGWCC 2 cut(s) 179, 499
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 179, 499
BmrFI CCNGG 3 cut(s) 444, 503, 1032
BmsI GCATC 3 cut(s) 576, 665, 854
BpiI GAAGAC 2 cut(s) 387, 877
BpmI CTGGAG 1 cut(s) 888
Bsa29I ATCGAT 2 cut(s) 36, 414
BsaBI GATNNNNATC 1 cut(s) 438
BsaI GGTCTC 2 cut(s) 630, 864
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 3 cut(s) 444, 503, 1032
BseCI ATCGAT 2 cut(s) 36, 414
BseGI GGATG 2 cut(s) 225, 656
BseJI GATNNNNATC 1 cut(s) 438
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 526, 751, 850
BsgI GTGCAG 1 cut(s) 888
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 414
BshVI ATCGAT 2 cut(s) 36, 414
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 692
BsmAI GTCTC 5 cut(s) 160, 245, 535, 630, 864
BsmFI GGGAC 1 cut(s) 692
Bso31I GGTCTC 2 cut(s) 630, 864
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
BspACI CCGC 1 cut(s) 408
BspDI ATCGAT 2 cut(s) 36, 414
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 766
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 1 cut(s) 454
BspTNI GGTCTC 2 cut(s) 630, 864
BsrI ACTGG 1 cut(s) 182
BssMI GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
Bst2UI CCWGG 3 cut(s) 444, 503, 1032
Bst4CI ACNGT 3 cut(s) 98, 256, 369
BstC8I GCNNGC 2 cut(s) 519, 803
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 225, 656
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 7 cut(s) 36, 40, 111, 264, 414, 436, 449
BstMAI GTCTC 5 cut(s) 160, 245, 535, 630, 864
BstMBI GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 3 cut(s) 444, 503, 1032
BstNSI RCATGY 2 cut(s) 478, 656
BstSCI CCNGG 3 cut(s) 442, 501, 1030
BstSFI CTRYAG 1 cut(s) 737
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 526, 751, 850
BstV2I GAAGAC 2 cut(s) 387, 877
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
Bsu15I ATCGAT 2 cut(s) 36, 414
BsuTUI ATCGAT 2 cut(s) 36, 414
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 225, 656
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 519, 803
CaiI CAGNNNCTG 1 cut(s) 866
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 179, 499
ClaI ATCGAT 2 cut(s) 36, 414
Csp6I GTAC 2 cut(s) 135, 601
CviAII CATG 5 cut(s) 31, 475, 653, 767, 806
CviQI GTAC 2 cut(s) 135, 601
DdeI CTNAG 1 cut(s) 507
DpnI GATC 7 cut(s) 35, 39, 110, 263, 413, 435, 448
DpnII GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
DraI TTTAAA 1 cut(s) 72
Eco31I GGTCTC 2 cut(s) 630, 864
Eco47I GGWCC 2 cut(s) 179, 499
Eco88I CYCGRG 1 cut(s) 303
EcoRII CCWGG 3 cut(s) 442, 501, 1030
EcoT22I ATGCAT 1 cut(s) 658
FaeI CATG 5 cut(s) 34, 478, 656, 770, 809
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 692
FatI CATG 5 cut(s) 30, 474, 652, 766, 805
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 515, 740, 864
FokI GGATG 2 cut(s) 232, 643
Fsp4HI GCNGC 3 cut(s) 515, 740, 864
FspBI CTAG 2 cut(s) 563, 687
GluI GCNGC 3 cut(s) 515, 740, 864
GsuI CTGGAG 1 cut(s) 888
Hin1II CATG 5 cut(s) 34, 478, 656, 770, 809
HindIII AAGCTT 1 cut(s) 922
HinfI GANTC 7 cut(s) 199, 280, 299, 416, 595, 751, 1001
HphI GGTGA 3 cut(s) 630, 675, 919
Hpy166II GTNNAC 2 cut(s) 9, 244
Hpy188I TCNGA 3 cut(s) 250, 594, 619
Hpy188III TCNNGA 5 cut(s) 41, 143, 420, 450, 767
Hpy8I GTNNAC 2 cut(s) 9, 244
HpyAV CCTTC 5 cut(s) 325, 480, 614, 645, 682
HpyCH4III ACNGT 3 cut(s) 98, 256, 369
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 8 cut(s) 187, 514, 656, 739, 805, 845, 905, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 5 cut(s) 34, 478, 656, 770, 809
Kzo9I GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 3 cut(s) 526, 751, 850
LweI GCATC 3 cut(s) 576, 665, 854
MaeI CTAG 2 cut(s) 563, 687
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 232, 648
MalI GATC 7 cut(s) 35, 39, 110, 263, 413, 435, 448
MboI GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
MboII GAAGA 9 cut(s) 158, 161, 271, 392, 575, 713, 788, 877, 939
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 6 cut(s) 73, 160, 491, 676, 967, 1051
MmeI TCCRAC 2 cut(s) 580, 779
MnlI CCTC 8 cut(s) 74, 189, 210, 294, 369, 490, 563, 683
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 4 cut(s) 71, 762, 960, 1054
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 128, 863
MspR9I CCNGG 3 cut(s) 444, 503, 1032
MvaI CCWGG 3 cut(s) 444, 503, 1032
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
NlaIII CATG 5 cut(s) 34, 478, 656, 770, 809
NmuCI GTSAC 1 cut(s) 648
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 2 cut(s) 478, 656
PagI TCATGA 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 7 cut(s) 199, 280, 299, 416, 595, 751, 1001
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 3 cut(s) 516, 741, 865
Ple19I CGATCG 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 960
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 3 cut(s) 442, 501, 1030
PspGI CCWGG 3 cut(s) 442, 501, 1030
PspPI GGNCC 2 cut(s) 179, 499
PstI CTGCAG 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 1 cut(s) 108
PvuI CGATCG 1 cut(s) 414
PvuII CAGCTG 2 cut(s) 128, 863
RsaI GTAC 2 cut(s) 136, 602
RsaNI GTAC 2 cut(s) 135, 601
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 4 cut(s) 71, 762, 960, 1054
SatI GCNGC 3 cut(s) 515, 740, 864
Sau3AI GATC 7 cut(s) 33, 37, 108, 261, 411, 433, 446
Sau96I GGNCC 2 cut(s) 179, 499
ScaI AGTACT 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 444, 503, 1032
SduI GDGCHC 1 cut(s) 822
SetI ASST 8 cut(s) 130, 458, 555, 688, 730, 865, 926, 1036
SfaNI GCATC 3 cut(s) 576, 665, 854
SfcI CTRYAG 1 cut(s) 737
SinI GGWCC 2 cut(s) 179, 499
SmiMI CAYNNNNRTG 1 cut(s) 771
Sse9I AATT 6 cut(s) 73, 160, 491, 676, 967, 1051
SsiI CCGC 1 cut(s) 408
SspI AATATT 1 cut(s) 958
SspMI CTAG 2 cut(s) 563, 687
StyD4I CCNGG 3 cut(s) 442, 501, 1030
TaaI ACNGT 3 cut(s) 98, 256, 369
TaiI ACGT 1 cut(s) 458
TaqI TCGA 5 cut(s) 36, 65, 142, 414, 419
TasI AATT 6 cut(s) 73, 160, 491, 676, 967, 1051
TatI WGTACW 2 cut(s) 134, 600
TfiI GAWTC 7 cut(s) 199, 280, 299, 416, 595, 751, 1001
Tru1I TTAA 4 cut(s) 71, 762, 960, 1054
Tru9I TTAA 4 cut(s) 71, 762, 960, 1054
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 3 cut(s) 514, 739, 863
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 9 cut(s) 17, 563, 575, 714, 738, 764, 783, 789, 822
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 179, 499
VspI ATTAAT 1 cut(s) 960
XapI RAATTY 1 cut(s) 73
XceI RCATGY 2 cut(s) 478, 656
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 563, 687
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.