Rorug05G0268100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001189
Physical Location & Seq
Reverse (-)
30287889 .. 30290847
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0268100.1

Sequence Viewer

Length: 840 bp
ATGGCCAGAAGTATACGTGAAGCTATTGCAAAGATGACGCAACTGGTTTGCCGGAAAATAGTTCACATAAACTTCCGGTGGAGTGTTCTAGACAGGGTTTCGATTATCCGGGAGTTTTTCCGGTTCATTTGGGATAAAATTCTTGTTTGTTCGGTCGGGAGGCAAAGAATCCGGTACCGGAGATTGACAAGAGGAGAGTCTTCGTCGCCGCCGCGGGAGGCCATAGAAGCGGCTTTGCCGACGACGAGTAGTTATGAGAGTACGGATGAGGATTTGGTGAGGTTGAAGATCAGTTTGTTGGGTGATTGCCAGATTGGAAAGACAAGCTTTATGATTAAATATGTTGGGGATGAACAAGAAGAACAAAGTTTGGAGATGACAGGAGTGAGTTTAATGGATAAAACATTGATGGTTCAAGGTGCTCGGATTTCCTGTAGTCTTTGGGACGTTGGAGGCGATAGGAATTCGCTGGATCATGTTCCGATTGCCTGTAAAGATGCAGTGGCGATTCTGTTCATGTTTGATCTTACTAGTCGGTGTACGCTCAATAGTGTCGTTGGATGGTACAGTGAAGCAAGAAAATGGAATCAGACTGCAATTCCCATACTAATTGGGACAAAATTTGATGATTTTGTGAGACTTCCTCCAGATCTGCAATGGACAATTATTACCCAGGCGAGGGCTTATGCAAAAGCTATGAAGGCGACCCTTTTCTTCTCAAGTGCAACCCACAACATCAATGTGAACAAGATCTTCAAGTTCATCTTGGCCAAGCTATTTAACTTGCCATGGAAGGTAGAGAGAAATTTGAATATTGGGGAGCCCATCATCGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

279

Amino Acids

31.98

Weight (kDa)

9.23

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 96 - 259 1.3e-20 Ras family
Roc PF08477 96 - 209 2.6e-16 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 209, 212, 214, 230
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 3, 768
AcsI RAATTY 4 cut(s) 138, 463, 620, 805
AfaI GTAC 4 cut(s) 176, 262, 541, 566
AfiI CCNNNNNNNGG 2 cut(s) 678, 679
AgsI TTSAA 4 cut(s) 286, 416, 757, 811
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 4 cut(s) 23, 327, 695, 775
AluI AGCT 4 cut(s) 23, 327, 695, 775
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 1 cut(s) 480
AoxI GGCC 3 cut(s) 3, 219, 768
ApoI RAATTY 4 cut(s) 138, 463, 620, 805
Asp718I GGTACC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 289, 314
BalI TGGCCA 2 cut(s) 5, 770
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 424
BccI CCATC 3 cut(s) 403, 555, 833
BciT130I CCWGG 1 cut(s) 674
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 631
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 2 cut(s) 89, 531
BfmI CTRYAG 1 cut(s) 433
BglII AGATCT 2 cut(s) 649, 750
BisI GCNGC 3 cut(s) 209, 212, 231
BlsI GCNGC 3 cut(s) 210, 213, 232
Bme1390I CCNGG 2 cut(s) 110, 674
BmiI GGNNCC 2 cut(s) 176, 822
BmrFI CCNGG 2 cut(s) 110, 674
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 628, 660
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 703
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 212, 672, 788
BsaWI WCCGGW 4 cut(s) 75, 120, 171, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 679
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 674
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 212, 672, 788
BseGI GGATG 3 cut(s) 271, 355, 566
BseLI CCNNNNNNNGG 2 cut(s) 678, 679
BseMI GCAATG 1 cut(s) 662
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 5, 221, 770
BshNI GGYRCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 6 cut(s) 52, 76, 109, 121, 172, 178
BslFI GGGAC 2 cut(s) 458, 628
BslI CCNNNNNNNGG 2 cut(s) 678, 679
BsmAI GTCTC 1 cut(s) 631
BsmFI GGGAC 2 cut(s) 458, 628
BsnI GGCC 3 cut(s) 5, 221, 770
Bsp1286I GDGCHC 2 cut(s) 424, 825
Bsp143I GATC 5 cut(s) 288, 472, 523, 649, 750
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 4 cut(s) 209, 212, 214, 230
BspANI GGCC 3 cut(s) 5, 221, 770
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 176, 822
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 662
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 212, 672, 788
BssMI GATC 5 cut(s) 288, 472, 523, 649, 750
BssNAI GTATAC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 788
Bst1107I GTATAC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 17
BstDSI CCRYGG 2 cut(s) 212, 788
BstF5I GGATG 3 cut(s) 271, 355, 566
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 5 cut(s) 291, 475, 526, 652, 753
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 5 cut(s) 288, 472, 523, 649, 750
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 227, 701
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 108, 672
BstSFI CTRYAG 1 cut(s) 433
BstUI CGCG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 649, 750
BstYI RGATCY 2 cut(s) 649, 750
BstZ17I GTATAC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 3 cut(s) 5, 221, 770
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 2 cut(s) 212, 788
BtsCI GGATG 3 cut(s) 271, 355, 566
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 507, 574
Cfr42I CCGCGG 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 175, 261, 540, 565
CviAII CATG 3 cut(s) 476, 517, 789
CviQI GTAC 4 cut(s) 175, 261, 540, 565
DpnI GATC 5 cut(s) 290, 474, 525, 651, 752
DpnII GATC 5 cut(s) 288, 472, 523, 649, 750
EaeI YGGCCR 2 cut(s) 3, 768
Eco130I CCWWGG 1 cut(s) 788
Eco24I GRGCYC 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 788
FaeI CATG 3 cut(s) 479, 520, 792
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 749, 781
FaqI GGGAC 2 cut(s) 458, 628
FatI CATG 3 cut(s) 475, 516, 788
FauI CCCGC 1 cut(s) 207
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 209, 212, 231
FokI GGATG 3 cut(s) 278, 362, 573
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 3 cut(s) 209, 212, 231
FspBI CTAG 2 cut(s) 89, 531
GluI GCNGC 3 cut(s) 209, 212, 231
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 3 cut(s) 5, 221, 770
HapII CCGG 6 cut(s) 52, 76, 109, 121, 172, 178
HgaI GACGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 479, 520, 792
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 4 cut(s) 168, 197, 508, 586
HpaII CCGG 6 cut(s) 52, 76, 109, 121, 172, 178
HphI GGTGA 2 cut(s) 289, 314
Hpy166II GTNNAC 4 cut(s) 14, 64, 540, 745
Hpy188I TCNGA 3 cut(s) 426, 483, 591
Hpy188III TCNNGA 3 cut(s) 89, 157, 647
Hpy8I GTNNAC 4 cut(s) 14, 64, 540, 745
Hpy99I CGWCG 3 cut(s) 208, 244, 247
HpyAV CCTTC 2 cut(s) 694, 787
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 2 cut(s) 16, 447
HpyCH4V TGCA 6 cut(s) 29, 500, 596, 655, 689, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 701
HpySE526I ACGT 2 cut(s) 16, 447
Hsp92II CATG 3 cut(s) 479, 520, 792
KpnI GGTACC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 215
Kzo9I GATC 5 cut(s) 288, 472, 523, 649, 750
LmnI GCTCC 1 cut(s) 820
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 89, 531
MaeII ACGT 2 cut(s) 16, 447
MalI GATC 5 cut(s) 290, 474, 525, 651, 752
MboI GATC 5 cut(s) 288, 472, 523, 649, 750
MboII GAAGA 5 cut(s) 192, 298, 371, 706, 745
MflI RGATCY 2 cut(s) 649, 750
MhlI GDGCHC 2 cut(s) 424, 825
MlsI TGGCCA 2 cut(s) 5, 770
MluCI AATT 7 cut(s) 138, 463, 597, 609, 620, 663, 805
MluNI TGGCCA 2 cut(s) 5, 770
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 430, 538
MnlI CCTC 8 cut(s) 153, 185, 211, 262, 273, 446, 654, 672
Mox20I TGGCCA 2 cut(s) 5, 770
MscI TGGCCA 2 cut(s) 5, 770
MseI TTAA 3 cut(s) 336, 392, 780
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 2 cut(s) 5, 770
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 6 cut(s) 52, 76, 109, 121, 172, 178
MspR9I CCNGG 2 cut(s) 110, 674
MvaI CCWGG 1 cut(s) 674
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 227, 701
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 788
NdeII GATC 5 cut(s) 288, 472, 523, 649, 750
NlaIII CATG 3 cut(s) 479, 520, 792
NlaIV GGNNCC 2 cut(s) 176, 822
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 3 cut(s) 168, 508, 586
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 3 cut(s) 210, 213, 232
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 176, 822
PsuI RGATCY 2 cut(s) 649, 750
RsaI GTAC 4 cut(s) 176, 262, 541, 566
RsaNI GTAC 4 cut(s) 175, 261, 540, 565
RseI CAYNNNNRTG 1 cut(s) 740
SacII CCGCGG 1 cut(s) 215
SaqAI TTAA 3 cut(s) 336, 392, 780
SatI GCNGC 3 cut(s) 209, 212, 231
Sau3AI GATC 5 cut(s) 288, 472, 523, 649, 750
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 110, 674
SduI GDGCHC 2 cut(s) 424, 825
SetI ASST 9 cut(s) 19, 25, 284, 329, 421, 450, 697, 777, 798
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 433
Sfr303I CCGCGG 1 cut(s) 215
SgrBI CCGCGG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 7 cut(s) 138, 463, 597, 609, 620, 663, 805
SsiI CCGC 4 cut(s) 209, 212, 214, 230
SspI AATATT 1 cut(s) 814
SspMI CTAG 2 cut(s) 89, 531
StyD4I CCNGG 2 cut(s) 108, 672
StyI CCWWGG 1 cut(s) 788
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 2 cut(s) 19, 450
TaqI TCGA 2 cut(s) 101, 831
TaqII GACCGA 1 cut(s) 142
TasI AATT 7 cut(s) 138, 463, 597, 609, 620, 663, 805
TauI GCSGC 3 cut(s) 211, 214, 233
TfiI GAWTC 3 cut(s) 168, 508, 586
Tru1I TTAA 3 cut(s) 336, 392, 780
Tru9I TTAA 3 cut(s) 336, 392, 780
TscAI CASTG 2 cut(s) 507, 574
TspDTI ATGAA 5 cut(s) 115, 366, 505, 713, 751
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 507, 574
XapI RAATTY 4 cut(s) 138, 463, 620, 805
XbaI TCTAGA 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 654
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 2 cut(s) 89, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.