Rmu_sc0034847.1_g000001

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034847.1
OG0001189
Physical Location & Seq
Reverse (-)
1 .. 590
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034847.1_g000001.1.cds

Sequence Viewer

Length: 331 bp
tggcaaggaaagcccccatgatgacgatgtcagtggtttgctaggaagcttggagcacaacctccccgacagtccttttgcttctccaacaaaaggagcccgggattacttgtctgcattcccggtcgcggccagtgaggccaatgattcatctgacgcctcagctgcaacagctaacattaacttggctacttccctactgccagtgccagccacttcctcactggacatggcatctttcaagtcctttaactgccaaattccaaggttgtcttccggccatggagccatagggatgtatgccgccggcgcagggggtccgaaatgcccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

110

Amino Acids

11.05

Weight (kDa)

4.8

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 129, 304
AcoI YGGCCR 2 cut(s) 130, 278
AcsI RAATTY 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 157
AfiI CCNNNNNNNGG 3 cut(s) 93, 128, 313
AgsI TTSAA 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 49, 165, 174
AluI AGCT 3 cut(s) 49, 165, 174
Alw21I GWGCWC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 3 cut(s) 130, 139, 278
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 3 cut(s) 101, 102, 123
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 152
BcnI CCSGG 3 cut(s) 101, 102, 123
BfaI CTAG 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 3 cut(s) 130, 166, 304
BlsI GCNGC 3 cut(s) 131, 167, 305
Bme1390I CCNGG 3 cut(s) 101, 102, 123
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 3 cut(s) 98, 287, 319
BmrFI CCNGG 3 cut(s) 101, 102, 123
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 161
BpuMI CCSGG 3 cut(s) 101, 102, 123
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 100, 264, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 128, 313
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 3 cut(s) 133, 204, 229
BseDI CCNNGG 3 cut(s) 100, 264, 281
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 3 cut(s) 93, 128, 313
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 3 cut(s) 133, 204, 229
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 132, 141, 280
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 4 cut(s) 101, 123, 277, 307
BslI CCNNNNNNNGG 3 cut(s) 93, 128, 313
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 3 cut(s) 132, 141, 280
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 58, 101
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 129, 304
BspANI GGCC 3 cut(s) 132, 141, 280
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 98, 287, 319
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 3 cut(s) 133, 204, 229
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 100, 264, 281
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 264, 281
Bst4CI ACNGT 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 211, 308
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 312
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 5 cut(s) 10, 138, 165, 171, 309
BstSCI CCNGG 3 cut(s) 99, 100, 121
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 265
BsuRI GGCC 3 cut(s) 132, 141, 280
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 4 cut(s) 38, 140, 211, 222
Cac8I GCNNGC 2 cut(s) 211, 308
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 318
Cfr9I CCCGGG 1 cut(s) 100
CseI GACGC 1 cut(s) 165
CviAII CATG 3 cut(s) 18, 230, 282
DdeI CTNAG 1 cut(s) 161
EaeI YGGCCR 2 cut(s) 130, 278
Eco130I CCWWGG 2 cut(s) 264, 281
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 264, 281
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 264, 281
FaeI CATG 3 cut(s) 21, 233, 285
FaiI YATR 5 cut(s) 19, 231, 283, 291, 301
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 3 cut(s) 17, 229, 281
Fnu4HI GCNGC 3 cut(s) 130, 166, 304
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 130, 166, 304
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 130, 166, 304
HaeIII GGCC 3 cut(s) 132, 141, 280
HapII CCGG 4 cut(s) 101, 123, 277, 307
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 3 cut(s) 21, 233, 285
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 147
HpaII CCGG 4 cut(s) 101, 123, 277, 307
Hpy188I TCNGA 2 cut(s) 155, 322
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 117, 168
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 138, 165, 171, 309
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 21, 233, 285
HspAI GCGC 1 cut(s) 310
KroI GCCGGC 1 cut(s) 306
KroNI GCCGGC 1 cut(s) 308
LmnI GCTCC 3 cut(s) 53, 96, 285
LpnPI CCDG 9 cut(s) 114, 136, 146, 210, 217, 223, 290, 298, 320
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 42
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 58, 101
MluCI AATT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 4 cut(s) 72, 131, 170, 230
MreI CGCCGGCG 1 cut(s) 306
MroNI GCCGGC 1 cut(s) 306
MseI TTAA 2 cut(s) 181, 250
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 4 cut(s) 101, 123, 277, 307
MspR9I CCNGG 3 cut(s) 101, 102, 123
Mva1269I GAATGC 1 cut(s) 117
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 10, 138, 165, 171, 309
NaeI GCCGGC 1 cut(s) 308
NciI CCSGG 3 cut(s) 101, 102, 123
NcoI CCATGG 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 306
NlaIII CATG 3 cut(s) 21, 233, 285
NlaIV GGNNCC 3 cut(s) 98, 287, 319
PctI GAATGC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 131, 167, 305
PspN4I GGNNCC 3 cut(s) 98, 287, 319
PspPI GGNCC 1 cut(s) 318
PsyI GACNNNGTC 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 2 cut(s) 181, 250
SatI GCNGC 3 cut(s) 130, 166, 304
Sau96I GGNCC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 101, 102, 123
SduI GDGCHC 2 cut(s) 58, 101
SetI ASST 5 cut(s) 51, 64, 167, 176, 270
SfaNI GCATC 1 cut(s) 243
SfiI GGCCNNNNNGGCC 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 306
SinI GGWCC 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 129, 304
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 99, 100, 121
StyI CCWWGG 2 cut(s) 264, 281
TaaI ACNGT 1 cut(s) 72
TasI AATT 1 cut(s) 259
TauI GCSGC 2 cut(s) 132, 306
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 181, 250
Tru9I TTAA 2 cut(s) 181, 250
TscAI CASTG 4 cut(s) 38, 140, 211, 229
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 139
TspMI CCCGGG 1 cut(s) 100
TspRI CASTG 4 cut(s) 38, 140, 211, 229
Tth111I GACNNNGTC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XmaI CCCGGG 1 cut(s) 100
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.