Rmu_sc0001966.1_g000024

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001966.1
OG0001189
Physical Location & Seq
Reverse (-)
118797 .. 121443
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001966.1_g000024.1.cds

Sequence Viewer

Length: 1845 bp
atggattcatacgaagctaccaagatcgttttctcaaggatccagagcttggattcagaaaatgcatcaaaaatcatggggtaccttttgattcaagaccagggtgagaaggagatgatacgcttggcatttggaccagagactctgcttcacaatctcatcatcaatgccaaaacccaactgggtcttgttcactccaagactccatctttcaaccccatttccaggcccaactcactttctctttcatcttctccaacctcaaatctttggagcctcagcaaccccattagtcccagctccacttgttcacctacttatgccaatgttgttagcaaaaacactaaccttgcttctgggtctctatcgccatccatcaatgactcttctagtgctactgagcttgttgacaacttccagttttctttcctcaatgatccgaagacggacgatgagtttttcgatggaggtcccgaaggtgtttatggtaattcctcgatgaacaagcagagctactctgctcactgcgggtgtgcttttggttctgaagatgtgaattccgggctcggatggaaaccatgttcgtattttgcaagagggttctgtaaaaatggaagtagttgccgttttctccacaatgatggcttgcctggaaatatcagtatgcttgagcagtgtgaagacttgctcagatccaatgctgctacccagcaacacaaacttgctgcagtgtcacagttcatgtccaatggttcttctttgccttacaacaggtgcctcaactttcttgtgcaacaacaaaatgacacccaaaggtcattgatgatgggagaagaacttctcaagtttgggagataccaacatgagagaaatgacgtttcgagtttgggtggaaatgtaattcccagttcaaggcagatctacttgacattcccagctgatagtacatttagagaagaagatgtctctaattatttcaacatgtttggacctgtgcaagatgtgaggattccataccagcagaagagaatgtttgggttcgttacatttgtatattcagaaactgtgaggatcattttggccaaagggaaccctcattttgtatgtgattctcgggtgcttgtgaagccttataaggagaaggggaaaataccagacaagaagctgcaccaacatttggagaggggagactattctctgtgttcaagcctatccgggcttgattctagggagccttatgacttcaatcttggatcaagaatgtattacagtacccaagagatgctgttgcgaaggaaattagaggaccaagcgaacttggagcaagctattgaactccaagaaagaagacttacgaatatgcaacttctaggcatcaagaataacaatcatcatcaatactatcaaggtctatcagaagggtctccatttccctccccaacgttctcacatgcagctaaaaatcaatccctcacagatgtctcaggagcctcagccatttcccaaagttatgctttagatggtgaacaacaagaagaggagaagagtggcaaggaccaatccaatgctgaagagtgtgacctccatcaaagtgtggagcacattctccctgataacctgtttgcttcaccagcagtagctggagaccacataaatgtcttctcaactgcttctgcaccattcaatgaaagcacctcagcaatatcttcttcttctaatagcaatagcaatagcaataatttactgccaaccgcttctacttctacgtccaatgcaacttccccaaaatctgttctctccagctcaggttttcttttgggtatggaaccactggaatgcaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

614

Amino Acids

67.67

Weight (kDa)

5.45

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
Acc65I GGTACC 1 cut(s) 81
AccB1I GGYRCC 2 cut(s) 81, 774
AccB7I CCANNNNNTGG 2 cut(s) 49, 1177
AciI CCGC 2 cut(s) 528, 1752
AclI AACGTT 1 cut(s) 1442
AclWI GGATC 6 cut(s) 34, 47, 431, 687, 1079, 1261
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 2 cut(s) 567, 1590
AfaI GTAC 3 cut(s) 83, 946, 1273
AfiI CCNNNNNNNGG 4 cut(s) 49, 225, 912, 1177
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 8 cut(s) 95, 214, 912, 979, 1206, 1246, 1334, 1684
AjnI CCWGG 3 cut(s) 99, 224, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AloI GAACNNNNNNTCC 2 cut(s) 565, 597
Alw21I GWGCWC 1 cut(s) 1602
Alw26I GTCTC 7 cut(s) 134, 366, 970, 1182, 1428, 1486, 1638
AlwI GGATC 6 cut(s) 34, 47, 431, 687, 1079, 1261
AlwNI CAGNNNCTG 2 cut(s) 1064, 1640
Ama87I CYCGRG 1 cut(s) 1113
AoxI GGCC 2 cut(s) 227, 1080
ApeKI GCWGC 4 cut(s) 701, 725, 1165, 1454
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 837
Asp718I GGTACC 1 cut(s) 81
AspS9I GGNCC 6 cut(s) 134, 228, 470, 989, 1306, 1555
AsuC2I CCSGG 2 cut(s) 562, 1216
AsuHPI GGTGA 4 cut(s) 116, 303, 1535, 1620
AvaI CYCGRG 1 cut(s) 1113
AvaII GGWCC 5 cut(s) 134, 470, 989, 1306, 1555
BalI TGGCCA 1 cut(s) 1082
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 81, 774
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 4 cut(s) 449, 687, 1354, 1651
Bbv12I GWGCWC 1 cut(s) 1602
BbvCI CCTCAGC 3 cut(s) 278, 1492, 1696
BbvI GCAGC 4 cut(s) 688, 712, 1152, 1466
BccI CCATC 9 cut(s) 214, 379, 383, 458, 564, 635, 820, 1514, 1593
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 3 cut(s) 101, 226, 651
BcnI CCSGG 2 cut(s) 562, 1216
BcoDI GTCTC 7 cut(s) 134, 366, 970, 1182, 1428, 1486, 1638
BfaI CTAG 3 cut(s) 390, 1227, 1370
BfmI CTRYAG 1 cut(s) 726
BglII AGATCT 1 cut(s) 918
BisI GCNGC 4 cut(s) 702, 726, 1166, 1455
BlsI GCNGC 4 cut(s) 703, 727, 1167, 1456
Bme1390I CCNGG 5 cut(s) 101, 226, 562, 651, 1216
Bme18I GGWCC 5 cut(s) 134, 470, 989, 1306, 1555
BmeT110I CYCGRG 1 cut(s) 1113
BmgT120I GGNCC 6 cut(s) 134, 228, 470, 989, 1306, 1555
BmiI GGNNCC 9 cut(s) 41, 83, 275, 472, 776, 1091, 1233, 1489, 1827
BmrFI CCNGG 5 cut(s) 101, 226, 562, 651, 1216
BmrI ACTGGG 2 cut(s) 191, 900
BmsI GCATC 3 cut(s) 74, 1272, 1383
BmuI ACTGGG 2 cut(s) 191, 900
BpiI GAAGAC 4 cut(s) 449, 687, 1354, 1651
BpmI CTGGAG 2 cut(s) 1662, 1783
Bpu10I CCTNAGC 4 cut(s) 278, 1492, 1696, 1804
BpuEI CTTGAG 3 cut(s) 19, 689, 827
BpuMI CCSGG 2 cut(s) 562, 1216
BsaI GGTCTC 3 cut(s) 366, 1428, 1638
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 225, 912, 1177
Bse1I ACTGG 4 cut(s) 186, 418, 906, 1836
BseBI CCWGG 3 cut(s) 101, 226, 651
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 371, 575
BseLI CCNNNNNNNGG 4 cut(s) 49, 225, 912, 1177
BseMII CTCAG 7 cut(s) 292, 390, 703, 1497, 1506, 1710, 1818
BseNI ACTGG 4 cut(s) 186, 418, 906, 1836
BseRI GAGGAG 1 cut(s) 1553
BseXI GCAGC 4 cut(s) 688, 712, 1152, 1466
BseYI CCCAGC 3 cut(s) 296, 708, 934
BsgI GTGCAG 2 cut(s) 1151, 1659
BshFI GGCC 2 cut(s) 229, 1082
BshNI GGYRCC 2 cut(s) 81, 774
BsiHKAI GWGCWC 1 cut(s) 1602
BsiHKCI CYCGRG 1 cut(s) 1113
BsiSI CCGG 2 cut(s) 561, 1215
BslFI GGGAC 2 cut(s) 279, 456
BslI CCNNNNNNNGG 4 cut(s) 49, 225, 912, 1177
BsmAI GTCTC 7 cut(s) 134, 366, 970, 1182, 1428, 1486, 1638
BsmFI GGGAC 2 cut(s) 279, 456
BsmI GAATGC 1 cut(s) 1841
BsnI GGCC 2 cut(s) 229, 1082
Bso31I GGTCTC 3 cut(s) 366, 1428, 1638
BsoBI CYCGRG 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 567, 1602
Bsp143I GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
BspACI CCGC 2 cut(s) 528, 1752
BspANI GGCC 2 cut(s) 229, 1082
BspCNI CTCAG 7 cut(s) 291, 391, 702, 1496, 1505, 1709, 1817
BspLI GGNNCC 9 cut(s) 41, 83, 275, 472, 776, 1091, 1233, 1489, 1827
BspMAI CTGCAG 1 cut(s) 730
BspPI GGATC 6 cut(s) 34, 47, 431, 687, 1079, 1261
BspT107I GGYRCC 2 cut(s) 81, 774
BspTNI GGTCTC 3 cut(s) 366, 1428, 1638
BsrI ACTGG 4 cut(s) 186, 418, 906, 1836
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
Bst2UI CCWGG 3 cut(s) 101, 226, 651
Bst4CI ACNGT 3 cut(s) 738, 1066, 1271
Bst6I CTCTTC 5 cut(s) 391, 1019, 1530, 1538, 1566
BstC8I GCNNGC 2 cut(s) 647, 1326
BstDEI CTNAG 7 cut(s) 278, 399, 689, 1483, 1492, 1696, 1804
BstF5I GGATG 2 cut(s) 371, 575
BstKTI GATC 7 cut(s) 27, 42, 439, 695, 921, 1074, 1256
BstMAI GTCTC 7 cut(s) 134, 366, 970, 1182, 1428, 1486, 1638
BstMBI GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
BstMWI GCNNNNNNNGC 2 cut(s) 1126, 1631
BstNI CCWGG 3 cut(s) 101, 226, 651
BstNSI RCATGY 2 cut(s) 985, 1454
BstSCI CCNGG 5 cut(s) 99, 224, 560, 649, 1214
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 4 cut(s) 688, 712, 1152, 1466
BstV2I GAAGAC 4 cut(s) 449, 687, 1354, 1651
BstX2I RGATCY 3 cut(s) 39, 692, 918
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 3 cut(s) 39, 692, 918
BsuRI GGCC 2 cut(s) 229, 1082
BtsCI GGATG 2 cut(s) 371, 575
BtsI GCAGTG 3 cut(s) 523, 680, 735
BtsIMutI CAGTG 4 cut(s) 523, 680, 735, 1829
Cac8I GCNNGC 2 cut(s) 647, 1326
CaiI CAGNNNCTG 2 cut(s) 1064, 1640
Cfr13I GGNCC 6 cut(s) 134, 228, 470, 989, 1306, 1555
Csp6I GTAC 3 cut(s) 82, 945, 1272
CviAII CATG 6 cut(s) 76, 579, 742, 863, 982, 1451
CviQI GTAC 3 cut(s) 82, 945, 1272
DdeI CTNAG 7 cut(s) 278, 399, 689, 1483, 1492, 1696, 1804
DpnI GATC 7 cut(s) 26, 41, 438, 694, 920, 1073, 1255
DpnII GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 5 cut(s) 391, 1019, 1530, 1538, 1566
EarI CTCTTC 5 cut(s) 391, 1019, 1530, 1538, 1566
Eco24I GRGCYC 1 cut(s) 567
Eco31I GGTCTC 3 cut(s) 366, 1428, 1638
Eco47I GGWCC 5 cut(s) 134, 470, 989, 1306, 1555
Eco57I CTGAAG 2 cut(s) 567, 1590
Eco88I CYCGRG 1 cut(s) 1113
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 99, 224, 649
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 567
FaeI CATG 6 cut(s) 79, 582, 745, 866, 985, 1454
FalI AAGNNNNNCTT 2 cut(s) 1498, 1530
FaqI GGGAC 2 cut(s) 279, 456
FatI CATG 6 cut(s) 75, 578, 741, 862, 981, 1450
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 4 cut(s) 702, 726, 1166, 1455
FokI GGATG 2 cut(s) 358, 582
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 4 cut(s) 702, 726, 1166, 1455
FspBI CTAG 3 cut(s) 390, 1227, 1370
GluI GCNGC 4 cut(s) 702, 726, 1166, 1455
GsaI CCCAGC 3 cut(s) 300, 712, 938
GsuI CTGGAG 2 cut(s) 1662, 1783
HaeIII GGCC 2 cut(s) 229, 1082
HapII CCGG 2 cut(s) 561, 1215
Hin1II CATG 6 cut(s) 79, 582, 745, 866, 985, 1454
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 9 cut(s) 5, 53, 91, 142, 202, 383, 1009, 1109, 1223
HpaII CCGG 2 cut(s) 561, 1215
HphI GGTGA 4 cut(s) 116, 303, 1535, 1620
Hpy166II GTNNAC 4 cut(s) 193, 311, 409, 1526
Hpy188I TCNGA 7 cut(s) 58, 441, 547, 569, 692, 1060, 1417
Hpy188III TCNNGA 6 cut(s) 43, 95, 473, 1257, 1378, 1485
Hpy8I GTNNAC 4 cut(s) 193, 311, 409, 1526
HpyAV CCTTC 5 cut(s) 103, 470, 1135, 1287, 1412
HpyCH4III ACNGT 3 cut(s) 738, 1066, 1271
HpyCH4IV ACGT 3 cut(s) 876, 1442, 1766
HpyF10VI GCNNNNNNNGC 2 cut(s) 1126, 1631
HpyF3I CTNAG 7 cut(s) 278, 399, 689, 1483, 1492, 1696, 1804
HpySE526I ACGT 3 cut(s) 876, 1442, 1766
Hsp92II CATG 6 cut(s) 79, 582, 745, 866, 985, 1454
KpnI GGTACC 1 cut(s) 85
Kzo9I GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
LmnI GCTCC 6 cut(s) 273, 305, 1231, 1321, 1487, 1597
Lsp1109I GCAGC 4 cut(s) 688, 712, 1152, 1466
LweI GCATC 3 cut(s) 74, 1272, 1383
MaeI CTAG 3 cut(s) 390, 1227, 1370
MaeII ACGT 3 cut(s) 876, 1442, 1766
MaeIII GTNAC 3 cut(s) 732, 1042, 1577
MalI GATC 7 cut(s) 26, 41, 438, 694, 920, 1073, 1255
MboI GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
MflI RGATCY 3 cut(s) 39, 692, 918
MhlI GDGCHC 2 cut(s) 567, 1602
MlsI TGGCCA 1 cut(s) 1082
MluCI AATT 6 cut(s) 490, 556, 900, 970, 1298, 1738
MluNI TGGCCA 1 cut(s) 1082
MlyI GAGTC 3 cut(s) 136, 196, 377
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 1082
Mph1103I ATGCAT 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 837
MscI TGGCCA 1 cut(s) 1082
MslI CAYNNNNRTG 4 cut(s) 639, 1590, 1653, 1834
Msp20I TGGCCA 1 cut(s) 1082
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 2 cut(s) 561, 1215
MspR9I CCNGG 5 cut(s) 101, 226, 562, 651, 1216
Mva1269I GAATGC 1 cut(s) 1841
MvaI CCWGG 3 cut(s) 101, 226, 651
MwoI GCNNNNNNNGC 2 cut(s) 1126, 1631
NciI CCSGG 2 cut(s) 562, 1216
NdeII GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
NlaIII CATG 6 cut(s) 79, 582, 745, 866, 985, 1454
NlaIV GGNNCC 9 cut(s) 41, 83, 275, 472, 776, 1091, 1233, 1489, 1827
NmuCI GTSAC 2 cut(s) 732, 1577
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 2 cut(s) 985, 1454
PciI ACATGT 1 cut(s) 981
PctI GAATGC 1 cut(s) 1841
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 6 cut(s) 5, 53, 91, 1009, 1109, 1223
PflMI CCANNNNNTGG 2 cut(s) 49, 1177
PkrI GCNGC 4 cut(s) 703, 727, 1167, 1456
PleI GAGTC 3 cut(s) 136, 196, 377
PpsI GAGTC 3 cut(s) 136, 196, 377
PpuMI RGGWCCY 1 cut(s) 470
PscI ACATGT 1 cut(s) 981
PsiI TTATAA 1 cut(s) 1134
Psp1406I AACGTT 1 cut(s) 1442
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 3 cut(s) 99, 224, 649
PspFI CCCAGC 3 cut(s) 296, 708, 934
PspGI CCWGG 3 cut(s) 99, 224, 649
PspN4I GGNNCC 9 cut(s) 41, 83, 275, 472, 776, 1091, 1233, 1489, 1827
PspPI GGNCC 6 cut(s) 134, 228, 470, 989, 1306, 1555
PspPPI RGGWCCY 1 cut(s) 470
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 2 cut(s) 1064, 1640
PsuI RGATCY 3 cut(s) 39, 692, 918
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 3 cut(s) 83, 946, 1273
RsaNI GTAC 3 cut(s) 82, 945, 1272
RseI CAYNNNNRTG 4 cut(s) 639, 1590, 1653, 1834
SatI GCNGC 4 cut(s) 702, 726, 1166, 1455
Sau3AI GATC 7 cut(s) 24, 39, 436, 692, 918, 1071, 1253
Sau96I GGNCC 6 cut(s) 134, 228, 470, 989, 1306, 1555
SchI GAGTC 3 cut(s) 136, 196, 377
ScrFI CCNGG 5 cut(s) 101, 226, 562, 651, 1216
SduI GDGCHC 2 cut(s) 567, 1602
SfaNI GCATC 3 cut(s) 74, 1272, 1383
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 5 cut(s) 134, 470, 989, 1306, 1555
SmiMI CAYNNNNRTG 4 cut(s) 639, 1590, 1653, 1834
SmlI CTYRAG 3 cut(s) 34, 668, 842
SmoI CTYRAG 3 cut(s) 34, 668, 842
Sse9I AATT 6 cut(s) 490, 556, 900, 970, 1298, 1738
SsiI CCGC 2 cut(s) 528, 1752
SspMI CTAG 3 cut(s) 390, 1227, 1370
StyD4I CCNGG 5 cut(s) 99, 224, 560, 649, 1214
TaaI ACNGT 3 cut(s) 738, 1066, 1271
TaiI ACGT 3 cut(s) 879, 1445, 1769
TaqI TCGA 3 cut(s) 462, 497, 881
TasI AATT 6 cut(s) 490, 556, 900, 970, 1298, 1738
TatI WGTACW 1 cut(s) 944
TfiI GAWTC 6 cut(s) 5, 53, 91, 1009, 1109, 1223
TscAI CASTG 4 cut(s) 530, 680, 735, 1836
TseFI GTSAC 2 cut(s) 732, 1577
TseI GCWGC 4 cut(s) 701, 725, 1165, 1454
Tsp45I GTSAC 2 cut(s) 732, 1577
TspDTI ATGAA 4 cut(s) 237, 515, 730, 1701
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 4 cut(s) 530, 680, 735, 1836
Van91I CCANNNNNTGG 2 cut(s) 49, 1177
VpaK11BI GGWCC 5 cut(s) 134, 470, 989, 1306, 1555
XapI RAATTY 1 cut(s) 556
XceI RCATGY 2 cut(s) 985, 1454
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 3 cut(s) 390, 1227, 1370
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.