Prupe.4G255100_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001189
Physical Location & Seq
Forward (+)
17693407 .. 17697151
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G255100.1

Sequence Viewer

Length: 2028 bp
ATGGATTCTTATGAAGCTACTAAGATAGTTTACTCAAGGATCCAAAATTTGGATCCAGAAAATGCCTCAAAAATCATGGGGTTCCTTTTGATACAAGACCATGGTGACAAGGAGATGATACGCTTGGCATTTGGACCAGAGACTCTGCTGCACAATCTCATCATCAATGCCAAAACCCAACTTGGCCTTCTTCAGTCAAAACCCAACTCTGCTACACCTTCTTCTCCTTCAACCTTCAACCCCATCTCAAGGCCCAACCCTTTGTCCCTGTCCTCCATATCTAATCCCTCCTCCCCATCTTCAAACCTTTGGAGCCTCAGCAATCCCATGAGCCCCAGCTCCACTTCTTCACCCTCTTATGCCAATATTGTTAGCAAAAACAGTAACCCTGGTTCTGTTTCTGGGTCTTTGTTGTCACCCACCATATCATCATCATCTTTATCTTCAGCCTACCACTCTTCTACCAGTGAACTTGCTGAAAAATACCAGCTTCAGAGCCATCTTTCTTTCCTCAGTGATCCAAAGACTGATGATTTGTTTGATGGAAGCCAAAATGCTTATAGCAGTTCTTCACTGCAAAAGCAAAGTTACTCTGTACCCAGCATGTGTTTTGGAGCTGAAGATGTAAATTCTGGGGTTGGATGGAAGCCATGCTTGTATTACTCAAGAGGGTTCTGTAAAAATGGAAGCAGCTGCCGTTTTCTCCACAGTGGCTCCATTAATGCTGATGGTGCCCCCGTTGATGTTGGTTCTCCTAGCAATGTCAATGTACTTGAGCAGTGTCAAGAGTTACTCAGATCCAATGCTGCTGCCCAGCAGCAGAAACAAGCCGCAGTCTCACATTTTATGGCCGGTGGTACTTCTTTTCCATACAACAAGTGCATGAATTTTCTTATGCAGCAACAAAATGACACTAAAAGGTCAGCGACATCTGCATTGATGATGGGAGATGAGCTTCACAAGTTTGGGAGATACCAATATGAGAGAAATGACATTTCAACTTTAACTTTGGGAGGAAATGTTAATCACAGTTCTAGGCAGATCTACCTGACATTCCCAGCTGATAGTACATTTAGAGAAGAAGATGTCTCTAATTATTTTAGCATTTATGGACCAGTTCAAGATGTGAGGATTCCATACCAGCAAAAGAGGATGTTTGGATTTGTTACATTTGTGTATTCAGAGACTGTGAAGATTATTCTGGCTAAAGGGAACCCTCATTTTGTCTGTGATTCGCGGGTGCTAGTGAAGCCTTACAAGGAGAAGGGGAAAATACCAGACAAGAAGCAACAACACCAACAGTTGGAGAGGGGAGACTATCATATCTGCACAAGCCTGTCTGGGATTGATTCTAGGGAGCCTTCTGACCTCAATCTTGGATCAAGAATGTTTTACAATACCCATGAGATGGTGTTAAGGAGGAAATTAGAGGAACAAGCTAATTTGCAGCAAGCCATTGAACTCCAAGAAAGAAGGCTTATGAACCTGCAACTTCTAGGCATCAAGAGTAACAATCATCATCATAATCAACATCAATACTATCATGGTCTTTCAGAAGGGTCTCCATTTCCCTCACCAACTTTATCTCATACACCCAAAAATCAATCCCTCATTGTTTCACCAAATGGGAATAAAGAAGAAGTCCTAGAAGAATTTGAAGGTAGTCTAGCTGAACAACTGCAGCAGGAGATGGTGAATCCAGCTTTCAATCTCATTGACCATGGCAGTGAGGATGACAATGGCAATGACTTTGACCTCCTCGAATGTATGGAGCACATTCTGCCTGATAACCTCTTTGCTTCTCCAAAAAAATCAGCTGCTGACCAAATAAATGCCTTCTCAACTACTACTTCTGCAGAAGTCAGTACTGAAAGCACCAGAGTCACAACCATTTCTTCTTACAACAATAATAATAATTTACTGCCCACCACTTCTACCTCCTCCAATGCAAATGCAACTTCCCCAAAATCTGTTCTCTCAAAATGCCCAGGTTTTCTTTTGGGTATGGAACCATTGGAATGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

676

Amino Acids

74.49

Weight (kDa)

5.93

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1494
AccB1I GGYRCC 1 cut(s) 731
AccB7I CCANNNNNTGG 3 cut(s) 49, 1303, 1408
AccII CGCG 1 cut(s) 1237
AciI CCGC 2 cut(s) 831, 1237
AclWI GGATC 7 cut(s) 34, 47, 47, 60, 512, 792, 1387
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 4 cut(s) 46, 628, 886, 1652
AcuI CTGAAG 4 cut(s) 176, 429, 476, 639
AfaI GTAC 5 cut(s) 597, 771, 859, 1069, 1867
AfiI CCNNNNNNNGG 4 cut(s) 49, 249, 1303, 1408
AgsI TTSAA 8 cut(s) 231, 238, 303, 999, 1121, 1460, 1658, 1708
AjnI CCWGG 2 cut(s) 388, 1987
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
Alw21I GWGCWC 1 cut(s) 1776
Alw26I GTCTC 6 cut(s) 134, 841, 1093, 1178, 1308, 1566
AlwI GGATC 7 cut(s) 34, 47, 47, 60, 512, 792, 1387
AlwNI CAGNNNCTG 2 cut(s) 1187, 1820
AoxI GGCC 3 cut(s) 184, 251, 849
ApoI RAATTY 4 cut(s) 46, 628, 886, 1652
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AseI ATTAAT 1 cut(s) 720
AspS9I GGNCC 3 cut(s) 134, 252, 1112
AsuHPI GGTGA 6 cut(s) 116, 342, 408, 1566, 1611, 1705
AvaII GGWCC 2 cut(s) 134, 1112
BaeGI GKGCMC 1 cut(s) 736
BamHI GGATCC 2 cut(s) 39, 52
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 1776
BbvCI CCTCAGC 1 cut(s) 317
BccI CCATC 9 cut(s) 251, 304, 507, 536, 636, 722, 937, 1402, 1684
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 2 cut(s) 390, 1989
BcoDI GTCTC 6 cut(s) 134, 841, 1093, 1178, 1308, 1566
BfaI CTAG 7 cut(s) 756, 1035, 1244, 1353, 1496, 1646, 1667
BfmI CTRYAG 2 cut(s) 1679, 1854
BfuAI ACCTGC 1 cut(s) 1494
BglII AGATCT 1 cut(s) 1041
BmcAI AGTACT 1 cut(s) 1867
Bme1390I CCNGG 2 cut(s) 390, 1989
Bme18I GGWCC 2 cut(s) 134, 1112
BmgT120I GGNCC 3 cut(s) 134, 252, 1112
BmiI GGNNCC 9 cut(s) 41, 54, 83, 314, 715, 733, 1214, 1359, 2010
BmrFI CCNGG 2 cut(s) 390, 1989
BmsI GCATC 1 cut(s) 1509
Bpu10I CCTNAGC 1 cut(s) 317
BpuEI CTTGAG 4 cut(s) 19, 232, 649, 794
BsaI GGTCTC 1 cut(s) 1566
BsaJI CCNNGG 4 cut(s) 100, 388, 1720, 1987
BsaXI ACNNNNNCTCC 4 cut(s) 698, 728, 1005, 1035
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 249, 1303, 1408
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 2 cut(s) 465, 1115
Bse3DI GCAATG 2 cut(s) 766, 1750
BseBI CCWGG 2 cut(s) 390, 1989
BseDI CCNNGG 4 cut(s) 100, 388, 1720, 1987
BseGI GGATG 3 cut(s) 647, 1158, 1738
BseLI CCNNNNNNNGG 4 cut(s) 49, 249, 1303, 1408
BseMI GCAATG 2 cut(s) 766, 1750
BseMII CTCAG 3 cut(s) 331, 526, 808
BseNI ACTGG 2 cut(s) 465, 1115
BseRI GAGGAG 3 cut(s) 280, 1748, 1930
BseSI GKGCMC 1 cut(s) 736
BseYI CCCAGC 4 cut(s) 335, 599, 813, 1057
BsgI GTGCAG 2 cut(s) 134, 1312
Bsh1236I CGCG 1 cut(s) 1237
BshFI GGCC 3 cut(s) 186, 253, 851
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 1776
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 4 cut(s) 49, 249, 1303, 1408
BsmAI GTCTC 6 cut(s) 134, 841, 1093, 1178, 1308, 1566
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 186, 253, 851
Bso31I GGTCTC 1 cut(s) 1566
Bsp1286I GDGCHC 3 cut(s) 335, 736, 1776
Bsp143I GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
Bsp19I CCATGG 2 cut(s) 100, 1720
BspACI CCGC 2 cut(s) 831, 1237
BspANI GGCC 3 cut(s) 186, 253, 851
BspCNI CTCAG 3 cut(s) 330, 525, 807
BspFNI CGCG 1 cut(s) 1237
BspLI GGNNCC 9 cut(s) 41, 54, 83, 314, 715, 733, 1214, 1359, 2010
BspMAI CTGCAG 2 cut(s) 1683, 1858
BspMI ACCTGC 1 cut(s) 1494
BspPI GGATC 7 cut(s) 34, 47, 47, 60, 512, 792, 1387
BspT107I GGYRCC 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 1566
BsrDI GCAATG 2 cut(s) 766, 1750
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 2 cut(s) 465, 1115
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 4 cut(s) 100, 388, 1720, 1987
BssMI GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
BssT1I CCWWGG 2 cut(s) 100, 1720
Bst2UI CCWGG 2 cut(s) 390, 1989
Bst4CI ACNGT 5 cut(s) 383, 710, 1031, 1189, 1302
Bst6I CTCTTC 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 1780
BstC8I GCNNGC 1 cut(s) 1452
BstDEI CTNAG 4 cut(s) 21, 317, 512, 794
BstDSI CCRYGG 2 cut(s) 100, 1720
BstF5I GGATG 3 cut(s) 647, 1158, 1738
BstFNI CGCG 1 cut(s) 1237
BstKTI GATC 6 cut(s) 42, 55, 520, 800, 1044, 1382
BstMAI GTCTC 6 cut(s) 134, 841, 1093, 1178, 1308, 1566
BstMBI GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
BstMWI GCNNNNNNNGC 4 cut(s) 731, 932, 1249, 1780
BstNI CCWGG 2 cut(s) 390, 1989
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 388, 1987
BstSFI CTRYAG 2 cut(s) 1679, 1854
BstSLI GKGCMC 1 cut(s) 736
BstUI CGCG 1 cut(s) 1237
BstX2I RGATCY 4 cut(s) 39, 52, 797, 1041
BstYI RGATCY 4 cut(s) 39, 52, 797, 1041
BsuRI GGCC 3 cut(s) 186, 253, 851
BtgI CCRYGG 2 cut(s) 100, 1720
BtsCI GGATG 3 cut(s) 647, 1158, 1738
BtsI GCAGTG 3 cut(s) 572, 785, 1732
BtsIMutI CAGTG 6 cut(s) 472, 520, 572, 715, 785, 1732
BveI ACCTGC 1 cut(s) 1494
Cac8I GCNNGC 1 cut(s) 1452
CaiI CAGNNNCTG 2 cut(s) 1187, 1820
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 3 cut(s) 134, 252, 1112
Csp6I GTAC 5 cut(s) 596, 770, 858, 1068, 1866
CviAII CATG 9 cut(s) 76, 101, 328, 604, 651, 883, 1403, 1544, 1721
CviQI GTAC 5 cut(s) 596, 770, 858, 1068, 1866
DdeI CTNAG 4 cut(s) 21, 317, 512, 794
DpnI GATC 6 cut(s) 41, 54, 519, 799, 1043, 1381
DpnII GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco130I CCWWGG 2 cut(s) 100, 1720
Eco24I GRGCYC 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 1566
Eco47I GGWCC 2 cut(s) 134, 1112
Eco57I CTGAAG 4 cut(s) 176, 429, 476, 639
EcoRII CCWGG 2 cut(s) 388, 1987
EcoT14I CCWWGG 2 cut(s) 100, 1720
EcoT38I GRGCYC 1 cut(s) 335
ErhI CCWWGG 2 cut(s) 100, 1720
FaeI CATG 9 cut(s) 79, 104, 331, 607, 654, 886, 1406, 1547, 1724
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 250
FatI CATG 9 cut(s) 75, 100, 327, 603, 650, 882, 1402, 1543, 1720
FauI CCCGC 1 cut(s) 1230
FokI GGATG 3 cut(s) 654, 1165, 1745
FriOI GRGCYC 1 cut(s) 335
FspBI CTAG 7 cut(s) 756, 1035, 1244, 1353, 1496, 1646, 1667
GsaI CCCAGC 4 cut(s) 339, 603, 817, 1061
HaeIII GGCC 3 cut(s) 186, 253, 851
HapII CCGG 1 cut(s) 852
Hin1II CATG 9 cut(s) 79, 104, 331, 607, 654, 886, 1406, 1547, 1724
HinfI GANTC 7 cut(s) 5, 142, 1132, 1232, 1349, 1696, 1881
HpaII CCGG 1 cut(s) 852
HphI GGTGA 6 cut(s) 116, 342, 408, 1566, 1611, 1705
Hpy166II GTNNAC 2 cut(s) 31, 470
Hpy188I TCNGA 5 cut(s) 495, 797, 1183, 1366, 1555
Hpy188III TCNNGA 6 cut(s) 56, 666, 785, 1121, 1383, 1504
Hpy8I GTNNAC 2 cut(s) 31, 470
HpyCH4III ACNGT 5 cut(s) 383, 710, 1031, 1189, 1302
HpyF10VI GCNNNNNNNGC 4 cut(s) 731, 932, 1249, 1780
HpyF3I CTNAG 4 cut(s) 21, 317, 512, 794
Hsp92II CATG 9 cut(s) 79, 104, 331, 607, 654, 886, 1406, 1547, 1724
Kzo9I GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
LmnI GCTCC 6 cut(s) 312, 344, 614, 719, 1357, 1771
LweI GCATC 1 cut(s) 1509
MaeI CTAG 7 cut(s) 756, 1035, 1244, 1353, 1496, 1646, 1667
MaeIII GTNAC 8 cut(s) 104, 383, 414, 587, 789, 1165, 1508, 1882
MalI GATC 6 cut(s) 41, 54, 519, 799, 1043, 1381
MboI GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
MflI RGATCY 4 cut(s) 39, 52, 797, 1041
MhlI GDGCHC 3 cut(s) 335, 736, 1776
MluCI AATT 9 cut(s) 46, 628, 886, 1093, 1424, 1441, 1652, 1915, 2023
MlyI GAGTC 2 cut(s) 136, 1890
MmeI TCCRAC 2 cut(s) 619, 1284
MseI TTAA 5 cut(s) 720, 1004, 1023, 1415, 2026
MslI CAYNNNNRTG 2 cut(s) 1725, 2017
MspA1I CMGCKG 3 cut(s) 693, 1061, 1817
MspI CCGG 1 cut(s) 852
MspR9I CCNGG 2 cut(s) 390, 1989
MvaI CCWGG 2 cut(s) 390, 1989
MvnI CGCG 1 cut(s) 1237
MwoI GCNNNNNNNGC 4 cut(s) 731, 932, 1249, 1780
NcoI CCATGG 2 cut(s) 100, 1720
NdeII GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
NlaIII CATG 9 cut(s) 79, 104, 331, 607, 654, 886, 1406, 1547, 1724
NlaIV GGNNCC 9 cut(s) 41, 54, 83, 314, 715, 733, 1214, 1359, 2010
NmuCI GTSAC 3 cut(s) 104, 414, 1882
NspI RCATGY 1 cut(s) 607
PfeI GAWTC 5 cut(s) 5, 1132, 1232, 1349, 1696
PflMI CCANNNNNTGG 3 cut(s) 49, 1303, 1408
PleI GAGTC 2 cut(s) 136, 1889
PpsI GAGTC 2 cut(s) 136, 1889
PshBI ATTAAT 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 388, 1987
PspFI CCCAGC 4 cut(s) 335, 599, 813, 1057
PspGI CCWGG 2 cut(s) 388, 1987
PspN4I GGNNCC 9 cut(s) 41, 54, 83, 314, 715, 733, 1214, 1359, 2010
PspPI GGNCC 3 cut(s) 134, 252, 1112
PsrI GAACNNNNNNTAC 2 cut(s) 376, 408
PstI CTGCAG 2 cut(s) 1683, 1858
PstNI CAGNNNCTG 2 cut(s) 1187, 1820
PsuI RGATCY 4 cut(s) 39, 52, 797, 1041
PvuII CAGCTG 3 cut(s) 693, 1061, 1817
RsaI GTAC 5 cut(s) 597, 771, 859, 1069, 1867
RsaNI GTAC 5 cut(s) 596, 770, 858, 1068, 1866
RseI CAYNNNNRTG 2 cut(s) 1725, 2017
SaqAI TTAA 5 cut(s) 720, 1004, 1023, 1415, 2026
Sau3AI GATC 6 cut(s) 39, 52, 517, 797, 1041, 1379
Sau96I GGNCC 3 cut(s) 134, 252, 1112
ScaI AGTACT 1 cut(s) 1867
SchI GAGTC 2 cut(s) 136, 1890
ScrFI CCNGG 2 cut(s) 390, 1989
SduI GDGCHC 3 cut(s) 335, 736, 1776
SfaNI GCATC 1 cut(s) 1509
SfcI CTRYAG 2 cut(s) 1679, 1854
SinI GGWCC 2 cut(s) 134, 1112
SmiMI CAYNNNNRTG 2 cut(s) 1725, 2017
SmlI CTYRAG 4 cut(s) 34, 247, 664, 773
SmoI CTYRAG 4 cut(s) 34, 247, 664, 773
Sse9I AATT 9 cut(s) 46, 628, 886, 1093, 1424, 1441, 1652, 1915, 2023
SsiI CCGC 2 cut(s) 831, 1237
SspI AATATT 1 cut(s) 367
SspMI CTAG 7 cut(s) 756, 1035, 1244, 1353, 1496, 1646, 1667
StyD4I CCNGG 2 cut(s) 388, 1987
StyI CCWWGG 2 cut(s) 100, 1720
TaaI ACNGT 5 cut(s) 383, 710, 1031, 1189, 1302
TaqI TCGA 1 cut(s) 1761
TasI AATT 9 cut(s) 46, 628, 886, 1093, 1424, 1441, 1652, 1915, 2023
TatI WGTACW 3 cut(s) 769, 1067, 1865
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 5 cut(s) 5, 1132, 1232, 1349, 1696
Tru1I TTAA 5 cut(s) 720, 1004, 1023, 1415, 2026
Tru9I TTAA 5 cut(s) 720, 1004, 1023, 1415, 2026
TscAI CASTG 6 cut(s) 472, 520, 579, 715, 785, 1732
TseFI GTSAC 3 cut(s) 104, 414, 1882
Tsp45I GTSAC 3 cut(s) 104, 414, 1882
TspDTI ATGAA 3 cut(s) 27, 899, 1496
TspRI CASTG 6 cut(s) 472, 520, 579, 715, 785, 1732
Van91I CCANNNNNTGG 3 cut(s) 49, 1303, 1408
VpaK11BI GGWCC 2 cut(s) 134, 1112
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 4 cut(s) 46, 628, 886, 1652
XceI RCATGY 1 cut(s) 607
XspI CTAG 7 cut(s) 756, 1035, 1244, 1353, 1496, 1646, 1667
ZrmI AGTACT 1 cut(s) 1867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.