Rmu_sc0028062.1_g000001

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028062.1
OG0001189
Physical Location & Seq
Reverse (-)
2115 .. 5691
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028062.1_g000001.1.cds

Sequence Viewer

Length: 849 bp
atgttgtggaggaggaagctggaggagcaagctgagcttcagcaagcacttgaacttcaaagccgaaggctaatgggtctgcagcttcttgatgtcaagaagcatcaccaccgagctctttctgccagcagtccgattaattctcctactcagtcccccagtatgttcaatcagaactttgtgcatccttcatttcataacccagaagttactaaagagaactgctctagtccggtgccaaccatttcttcagctctctcagcagaccagcagcctcaggtggcagcaaccgttgctacaggtaaagaatcaggtgccaacagtgacgacagtgggagtggcaaggaaagcccccatgatgacgatgtcagtggtttgctaggaagcttggagcacaacctccccgacagcccttttgcttctccaacaaaaggagcccgggattacttgtctgcattcccggtcgcggccagtgaggccaatgattcatctgacgcctcagctgcaacagctaacattaacttggctacttccctactgccagtgccagccacttcctcactggacatggcatctttcaagtcctttaactgccaaattccaaggttgtcttccggccatggagccatagggatgtatgccgccggcgcagggggtccgaaatgcccggaaggattgcataggaggagttttgagggtggtggtaatattggtcaagtggatctggcgtggggctcctctagtggcggctttgggcggagcacagtcggtggaggcaaattggtatggtggtgctgtaaaggtggtggctgcaagttgtgggttgtgaggtgccctagactttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

282

Amino Acids

29.57

Weight (kDa)

6.75

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 235, 314, 831
AccII CGCG 1 cut(s) 467
AciI CCGC 4 cut(s) 467, 642, 747, 757
AclWI GGATC 1 cut(s) 729
AcoI YGGCCR 2 cut(s) 468, 616
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 2 cut(s) 23, 234
AcyI GRCGYC 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 431, 466, 651
AgsI TTSAA 4 cut(s) 53, 59, 169, 580
AjuI GAANNNNNNNTTGG 4 cut(s) 232, 264, 595, 627
AluBI AGCT 9 cut(s) 19, 32, 37, 85, 116, 254, 387, 503, 512
AluI AGCT 9 cut(s) 19, 32, 37, 85, 116, 254, 387, 503, 512
Alw21I GWGCWC 3 cut(s) 118, 396, 764
AlwI GGATC 1 cut(s) 729
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 3 cut(s) 468, 477, 616
ApeKI GCWGC 5 cut(s) 82, 271, 284, 503, 810
ApoI RAATTY 1 cut(s) 597
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 1 cut(s) 138
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 4 cut(s) 439, 440, 461, 668
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 836
BanI GGYRCC 3 cut(s) 235, 314, 831
BanII GRGCYC 3 cut(s) 118, 439, 737
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 3 cut(s) 118, 396, 764
BbvCI CCTCAGC 1 cut(s) 499
BbvI GCAGC 5 cut(s) 94, 283, 296, 490, 797
BcnI CCSGG 4 cut(s) 439, 440, 461, 668
BfaI CTAG 4 cut(s) 228, 380, 741, 837
BfmI CTRYAG 2 cut(s) 80, 297
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 8 cut(s) 83, 272, 285, 468, 504, 642, 748, 811
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 8 cut(s) 84, 273, 286, 469, 505, 643, 749, 812
Bme1390I CCNGG 4 cut(s) 439, 440, 461, 668
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 7 cut(s) 237, 316, 436, 625, 657, 736, 833
BmrFI CCNGG 4 cut(s) 439, 440, 461, 668
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 112, 193, 581
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 499
Bpu1102I GCTNAGC 1 cut(s) 33
BpuMI CCSGG 4 cut(s) 439, 440, 461, 668
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 438, 602, 619
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 466, 651
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 4 cut(s) 159, 471, 542, 567
Bse21I CCTNAGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 438, 602, 619
BseGI GGATG 2 cut(s) 184, 639
BseLI CCNNNNNNNGG 3 cut(s) 431, 466, 651
BseMII CTCAG 5 cut(s) 24, 164, 273, 290, 513
BseNI ACTGG 4 cut(s) 159, 471, 542, 567
BseRI GAGGAG 4 cut(s) 25, 38, 700, 727
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 5 cut(s) 94, 283, 296, 490, 797
Bsh1236I CGCG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 470, 479, 618
BshNI GGYRCC 3 cut(s) 235, 314, 831
BsiEI CGRYCG 1 cut(s) 465
BsiHKAI GWGCWC 3 cut(s) 118, 396, 764
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 6 cut(s) 233, 439, 461, 615, 645, 668
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 3 cut(s) 431, 466, 651
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 3 cut(s) 470, 479, 618
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 6 cut(s) 118, 396, 439, 737, 764, 836
Bsp143I GATC 1 cut(s) 721
Bsp1720I GCTNAGC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 4 cut(s) 467, 642, 747, 757
BspANI GGCC 3 cut(s) 470, 479, 618
BspCNI CTCAG 5 cut(s) 25, 163, 272, 289, 512
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 7 cut(s) 237, 316, 436, 625, 657, 736, 833
BspMAI CTGCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 729
BspT107I GGYRCC 3 cut(s) 235, 314, 831
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 4 cut(s) 159, 471, 542, 567
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 3 cut(s) 438, 602, 619
BssMI GATC 1 cut(s) 721
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 602, 619
Bst4CI ACNGT 4 cut(s) 292, 323, 332, 766
BstACI GRCGYC 1 cut(s) 495
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 5 cut(s) 30, 45, 127, 549, 646
BstDEI CTNAG 6 cut(s) 33, 150, 259, 276, 499, 846
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 2 cut(s) 184, 639
BstFNI CGCG 1 cut(s) 467
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 1 cut(s) 724
BstMBI GATC 1 cut(s) 721
BstMCI CGRYCG 1 cut(s) 465
BstSCI CCNGG 4 cut(s) 437, 438, 459, 666
BstSFI CTRYAG 2 cut(s) 80, 297
BstSLI GKGCMC 1 cut(s) 836
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 5 cut(s) 94, 283, 296, 490, 797
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 470, 479, 618
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 184, 639
BtsIMutI CAGTG 6 cut(s) 328, 337, 376, 478, 549, 560
Cac8I GCNNGC 5 cut(s) 30, 45, 127, 549, 646
CfoI GCGC 1 cut(s) 650
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 1 cut(s) 656
Cfr9I CCCGGG 1 cut(s) 438
CseI GACGC 1 cut(s) 503
CviAII CATG 3 cut(s) 356, 568, 620
DdeI CTNAG 6 cut(s) 33, 150, 259, 276, 499, 846
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
EaeI YGGCCR 2 cut(s) 468, 616
EciI GGCGGA 1 cut(s) 772
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 602, 619
Eco24I GRGCYC 3 cut(s) 118, 439, 737
Eco47I GGWCC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 23, 234
Eco81I CCTNAGG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 602, 619
EcoT38I GRGCYC 3 cut(s) 118, 439, 737
ErhI CCWWGG 2 cut(s) 602, 619
FaeI CATG 3 cut(s) 359, 571, 623
FaiI YATR 9 cut(s) 164, 198, 357, 569, 621, 629, 639, 681, 787
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 595, 627
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 355, 567, 619
Fnu4HI GCNGC 8 cut(s) 83, 272, 285, 468, 504, 642, 748, 811
FokI GGATG 2 cut(s) 171, 646
FriOI GRGCYC 3 cut(s) 118, 439, 737
Fsp4HI GCNGC 8 cut(s) 83, 272, 285, 468, 504, 642, 748, 811
FspBI CTAG 4 cut(s) 228, 380, 741, 837
GlaI GCGC 1 cut(s) 649
GluI GCNGC 8 cut(s) 83, 272, 285, 468, 504, 642, 748, 811
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 3 cut(s) 470, 479, 618
HapII CCGG 6 cut(s) 233, 439, 461, 615, 645, 668
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 359, 571, 623
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 2 cut(s) 308, 485
HpaII CCGG 6 cut(s) 233, 439, 461, 615, 645, 668
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 4 cut(s) 135, 174, 493, 660
Hpy188III TCNNGA 2 cut(s) 89, 97
HpyAV CCTTC 3 cut(s) 60, 198, 665
HpyCH4III ACNGT 4 cut(s) 292, 323, 332, 766
HpyCH4V TGCA 6 cut(s) 82, 184, 455, 506, 679, 813
HpyF3I CTNAG 6 cut(s) 33, 150, 259, 276, 499, 846
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 359, 571, 623
HspAI GCGC 1 cut(s) 648
KroI GCCGGC 1 cut(s) 644
KroNI GCCGGC 1 cut(s) 646
Kzo9I GATC 1 cut(s) 721
LmnI GCTCC 6 cut(s) 25, 391, 434, 623, 740, 759
Lsp1109I GCAGC 5 cut(s) 94, 283, 296, 490, 797
LweI GCATC 3 cut(s) 112, 193, 581
MaeI CTAG 4 cut(s) 228, 380, 741, 837
MaeIII GTNAC 2 cut(s) 208, 323
MalI GATC 1 cut(s) 723
MboI GATC 1 cut(s) 721
MboII GAAGA 2 cut(s) 240, 603
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 6 cut(s) 118, 396, 439, 737, 764, 836
MluCI AATT 3 cut(s) 139, 597, 779
MmeI TCCRAC 1 cut(s) 449
MreI CGCCGGCG 1 cut(s) 644
MroNI GCCGGC 1 cut(s) 644
MseI TTAA 3 cut(s) 138, 519, 588
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 6 cut(s) 233, 439, 461, 615, 645, 668
MspR9I CCNGG 4 cut(s) 439, 440, 461, 668
Mva1269I GAATGC 1 cut(s) 455
MvnI CGCG 1 cut(s) 467
NaeI GCCGGC 1 cut(s) 646
NciI CCSGG 4 cut(s) 439, 440, 461, 668
NcoI CCATGG 1 cut(s) 619
NdeII GATC 1 cut(s) 721
NgoMIV GCCGGC 1 cut(s) 644
NlaIII CATG 3 cut(s) 359, 571, 623
NlaIV GGNNCC 7 cut(s) 237, 316, 436, 625, 657, 736, 833
NmuCI GTSAC 1 cut(s) 323
PctI GAATGC 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 646
PfeI GAWTC 2 cut(s) 308, 485
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 8 cut(s) 84, 273, 286, 469, 505, 643, 749, 812
PshBI ATTAAT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 118
PspN4I GGNNCC 7 cut(s) 237, 316, 436, 625, 657, 736, 833
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 3 cut(s) 138, 519, 588
SatI GCNGC 8 cut(s) 83, 272, 285, 468, 504, 642, 748, 811
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 1 cut(s) 656
ScrFI CCNGG 4 cut(s) 439, 440, 461, 668
SduI GDGCHC 6 cut(s) 118, 396, 439, 737, 764, 836
SfaNI GCATC 3 cut(s) 112, 193, 581
SfcI CTRYAG 2 cut(s) 80, 297
SfiI GGCCNNNNNGGCC 1 cut(s) 476
SgrAI CRCCGGYG 1 cut(s) 644
SinI GGWCC 1 cut(s) 656
SmaI CCCGGG 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 3 cut(s) 139, 597, 779
SsiI CCGC 4 cut(s) 467, 642, 747, 757
SspI AATATT 1 cut(s) 709
SspMI CTAG 4 cut(s) 228, 380, 741, 837
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 4 cut(s) 437, 438, 459, 666
StyI CCWWGG 2 cut(s) 602, 619
TaaI ACNGT 4 cut(s) 292, 323, 332, 766
TasI AATT 3 cut(s) 139, 597, 779
TauI GCSGC 3 cut(s) 470, 644, 750
TfiI GAWTC 2 cut(s) 308, 485
Tru1I TTAA 3 cut(s) 138, 519, 588
Tru9I TTAA 3 cut(s) 138, 519, 588
TscAI CASTG 6 cut(s) 328, 337, 376, 478, 549, 567
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 5 cut(s) 82, 271, 284, 503, 810
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 180, 185, 477
TspMI CCCGGG 1 cut(s) 438
TspRI CASTG 6 cut(s) 328, 337, 376, 478, 549, 567
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 656
VspI ATTAAT 1 cut(s) 138
XapI RAATTY 1 cut(s) 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmaI CCCGGG 1 cut(s) 438
XspI CTAG 4 cut(s) 228, 380, 741, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.