Rh1DG033300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001189
Physical Location & Seq
Reverse (-)
4890463 .. 4893315
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG033300.1

Sequence Viewer

Length: 2175 bp
ATGGATTCCTATGAAGCTACAAGGATTGTGTTCTCAAGGATCACAAACTTGGACCCAGAAAATGCTTCCAAAATCATGGGTCTTCTTCTAATCCAAGACCATGGAGAGAAGGAGATGATACGATTAGCTTTCGGCCCCGAGGCGTTTCTCCACTCTGTGATTCTCAAGGCTCGGAAGGACTTGGGACTAATGCCCATATCCAACTCTCCATCCACACCCACCACACCTTCCTCTCCTTCGCCCTTCCTCTCCACCAACCCAATCGCTATTTCGAGGCAAAACTCTGCTTCCTCAAGGCTATCTCTCACTATACCAAACCCATCTTCTTCTGCTTCTACTTGGGCTGCTTTGTCTTCCGAGCTTCGAAACCAAGACGAGAGTATGATGATGAGTCCCAACAACATGGCTCCTAACGTGTCTTCTTCATCTTCCATGATGAATTCATCTCTACCCTTTTTCGGAAACGGTGGACCCGACCATGTGCTTGAGGAGTTTCAGCTTCAAGACCAGCTCTCTTTTCTCAACGATGGAGCTCCTAAATCCCCTGATTTGTTTTACCCCCAGTCAGACTTGTCTTCCAGCCCAACTAATGGTTCTGATCAGACCCTTTTCTCCTCCTACGGTGGCTCCGGGAACTGGGGCGGTGGTGGGGCTCTTCACCGCCGGAGCTGCTCCGTCAGTGATGTGTGCTTGGAAGACCCGAATTCCGGGTTCGGGTGGAAGCCCTGTTTGTACTATGCTAGAGGGTACTGCAAGAATGGAACTAGCTGTAGATTCTTGCATGGTGGTGGAATCGGGGACTTGGGTTCGGATGGTGTTCCACTTGTTGGTTCACCAAACAAGCTTGAGATGATGGACCAGTCGTGCCATGAAGCACTTCTCAGATCCAAGTCTGCTCAACAGCAAAGACTGGCTGCAGCTTCCCAGCTCATGGCCTCAGCCAACTCTTTCCCTTACTCCTCTAAGTGCGTGAACTTCCTTCTTCAGCAGCAACAAACTGATGCGCAGAGGGCTGCCGCAGCCTTGATGATGGGGGATGATATCCACAAATTTAGTCGATCTCCTCGGATGGAAAGGAGCGAGTTTCCAATGATGAACGGTGGGGCTGGGATGGTGAACCCAGCCTCAAGGCAGATATACTTGACTTTTCCAGCTGATAGCACTTTCAGAGAAGAAGACGTGTCAAATTACTTCAGCATTTATGGACCTGTTCAAGATGTGAGAATTCCATACCAGCAGAAGAGGATGTTTGGGTTTGTTACATTTGTGTACCCGGAGACTGTGAAGCATATTTTGGCGAAAGGAAACCCTCATTTTGTGTGTGATGCTCGAGTGCTGGTCAAGCCTTACAAGGAGAAGGGCAAAGTTCAGGACAAGAAGCAACAAGTGGAAAGAGGAGATTTGTCACCCTGTGGTACACCTACTGGTCTTGATGGTAGAGACCCTTATGATCTCCAGCTAGGAGCTAGGTTGTTTTACAACTCTCAAGACATGTTGTGGAGGAGGAAGCTGGAGGAGCAAGCAGAGCTTCAGCAAGCACTTGAACTTCAAAGCCGAAGGCTAATGGGTCTGCAGCTTCTTGATGTCAAGAAGCATCACCACCGAGCTCTTTCTGCCAGCAGTCCGATTAATTCTCCCACTCAGTCCCCCAGTATGTTCAATCAGAACTTTGTGCATCCTTCATTTCATAACCCAGAAGTTACTAAAGAGAACTGCTCTAGTCCGGTACCAACCATTTCTTCAGCTCTCTCAGCAGACCAGCAGCCTCAGGTGGCAGCAACCGTGGCTACAGGTAAAGAATCAGGTGCCAACAGTGACGACAGTGGGAGTGGCAAGGATAGCCCCCATGATGACGATGTCAGTGGTTTGCTAGGAAGCTTGGAGCACAACCTCCCCGACAGCCCTTTTGCTTCGCCAACAAAAGGAGCCCGGGATTACTTGTCTGCATTCCCGGTCGCGGCCAGTGAGGCCAATGATTCATCTGATGCCTCAGCTGCAACAGCTAACATTAACTTGGCTACTACCCTACTGCCAGTGCCAGCCACTTCCTCACTGGACATGGCATCTTTCAAGTCCTTTAACTGCCAAATTCCAAGGTTGTCTTCCGGCCATGGAGCCATAGGGATGTATGCCGCCGGCGCAGGGGGGCCGAAATGCCCGGTTGGAACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

724

Amino Acids

78.02

Weight (kDa)

6.03

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 64 4.3e-33 AtC3H46 PABC domain
RRM_1 PF00076 389 - 434 6.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1005
Acc65I GGTACC 1 cut(s) 1726
AccB1I GGYRCC 2 cut(s) 1726, 1805
AccB7I CCANNNNNTGG 3 cut(s) 590, 827, 931
AccII CGCG 1 cut(s) 1958
AciI CCGC 5 cut(s) 642, 661, 1017, 1958, 2133
AclWI GGATC 2 cut(s) 47, 879
AcoI YGGCCR 2 cut(s) 1959, 2107
AcsI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2088
AcuI CTGAAG 4 cut(s) 968, 1177, 1514, 1725
AdeI CACNNNGTG 2 cut(s) 157, 1412
AfaI GTAC 5 cut(s) 734, 749, 1271, 1417, 1728
AflIII ACRYGT 3 cut(s) 414, 1179, 1491
AgsI TTSAA 6 cut(s) 503, 1214, 1544, 1550, 1660, 2071
AjiI CACGTC 1 cut(s) 1180
Alw21I GWGCWC 3 cut(s) 535, 1609, 1887
Alw26I GTCTC 2 cut(s) 1271, 1434
AlwI GGATC 2 cut(s) 47, 879
Ama87I CYCGRG 3 cut(s) 137, 1329, 1929
AoxI GGCC 6 cut(s) 133, 933, 1959, 1968, 2107, 2147
ApoI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2088
ArsI GACNNNNNNTTYG 2 cut(s) 1889, 1921
AseI ATTAAT 1 cut(s) 1629
Asp700I GAANNNNTTC 1 cut(s) 876
Asp718I GGTACC 1 cut(s) 1726
AspLEI GCGC 2 cut(s) 1006, 2141
AspS9I GGNCC 6 cut(s) 52, 134, 470, 856, 1205, 2147
AsuC2I CCSGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
AsuHPI GGTGA 5 cut(s) 650, 825, 1126, 1398, 1589
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 3 cut(s) 137, 1329, 1929
AvaII GGWCC 4 cut(s) 52, 470, 856, 1205
AxyI CCTNAGG 1 cut(s) 1767
BanI GGYRCC 2 cut(s) 1726, 1805
BanII GRGCYC 4 cut(s) 535, 655, 1609, 1930
BbsI GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2094
Bbv12I GWGCWC 3 cut(s) 535, 1609, 1887
BbvCI CCTCAGC 2 cut(s) 937, 1990
BccI CCATC 9 cut(s) 217, 328, 521, 806, 847, 1024, 1063, 1105, 1427
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
BcoDI GTCTC 2 cut(s) 1271, 1434
BfaI CTAG 6 cut(s) 741, 765, 1460, 1467, 1719, 1871
BfmI CTRYAG 4 cut(s) 769, 915, 1571, 1788
BglI GCCNNNNNGGC 1 cut(s) 1967
Bme1390I CCNGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
Bme18I GGWCC 4 cut(s) 52, 470, 856, 1205
BmeT110I CYCGRG 3 cut(s) 137, 1329, 1929
BmgBI CACGTC 1 cut(s) 1180
BmgT120I GGNCC 6 cut(s) 52, 134, 470, 856, 1205, 2147
BmrFI CCNGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
BmrI ACTGGG 3 cut(s) 556, 646, 1644
BmsI GCATC 6 cut(s) 991, 1315, 1603, 1684, 1975, 2072
BmuI ACTGGG 3 cut(s) 556, 646, 1644
BpiI GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2094
BplI GAGNNNNNCTC 2 cut(s) 1700, 1732
BpmI CTGGAG 2 cut(s) 1439, 1532
Bpu10I CCTNAGC 2 cut(s) 937, 1990
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 7 cut(s) 19, 149, 277, 506, 866, 1111, 1470
BpuMI CCSGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
BsaI GGTCTC 1 cut(s) 1434
BsaJI CCNNGG 7 cut(s) 100, 138, 1064, 1782, 1929, 2093, 2110
BsaWI WCCGGW 1 cut(s) 1723
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bse118I RCCGGY 1 cut(s) 2135
Bse1I ACTGG 9 cut(s) 562, 641, 859, 915, 1429, 1650, 1962, 2033, 2058
Bse21I CCTNAGG 1 cut(s) 1767
BseDI CCNNGG 7 cut(s) 100, 138, 1064, 1782, 1929, 2093, 2110
BseGI GGATG 8 cut(s) 209, 817, 1042, 1074, 1116, 1251, 1675, 2130
BseMII CTCAG 6 cut(s) 895, 951, 1655, 1764, 1781, 2004
BseNI ACTGG 9 cut(s) 562, 641, 859, 915, 1429, 1650, 1962, 2033, 2058
BseRI GAGGAG 7 cut(s) 503, 604, 949, 1053, 1410, 1516, 1529
BseYI CCCAGC 3 cut(s) 924, 1106, 1120
Bsh1236I CGCG 1 cut(s) 1958
Bsh1285I CGRYCG 1 cut(s) 1956
BshFI GGCC 6 cut(s) 135, 935, 1961, 1970, 2109, 2149
BshNI GGYRCC 2 cut(s) 1726, 1805
BsiEI CGRYCG 1 cut(s) 1956
BsiHKAI GWGCWC 3 cut(s) 535, 1609, 1887
BsiHKCI CYCGRG 3 cut(s) 137, 1329, 1929
BslFI GGGAC 4 cut(s) 198, 378, 812, 1630
BsmAI GTCTC 2 cut(s) 1271, 1434
BsmFI GGGAC 4 cut(s) 198, 378, 812, 1630
BsmI GAATGC 1 cut(s) 1946
BsnI GGCC 6 cut(s) 135, 935, 1961, 1970, 2109, 2149
Bso31I GGTCTC 1 cut(s) 1434
BsoBI CYCGRG 3 cut(s) 137, 1329, 1929
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 5 cut(s) 535, 655, 1609, 1887, 1930
Bsp143I GATC 5 cut(s) 39, 598, 884, 1058, 1450
Bsp19I CCATGG 2 cut(s) 100, 2110
BspACI CCGC 5 cut(s) 642, 661, 1017, 1958, 2133
BspANI GGCC 6 cut(s) 135, 935, 1961, 1970, 2109, 2149
BspCNI CTCAG 6 cut(s) 894, 950, 1654, 1763, 1780, 2003
BspFNI CGCG 1 cut(s) 1958
BspMAI CTGCAG 2 cut(s) 919, 1575
BspPI GGATC 2 cut(s) 47, 879
BspQI GCTCTTC 1 cut(s) 660
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 2 cut(s) 1726, 1805
BspTNI GGTCTC 1 cut(s) 1434
BsrFI RCCGGY 1 cut(s) 2135
BsrI ACTGG 9 cut(s) 562, 641, 859, 915, 1429, 1650, 1962, 2033, 2058
BssAI RCCGGY 1 cut(s) 2135
BssECI CCNNGG 7 cut(s) 100, 138, 1064, 1782, 1929, 2093, 2110
BssMI GATC 5 cut(s) 39, 598, 884, 1058, 1450
BssT1I CCWWGG 3 cut(s) 100, 2093, 2110
Bst4CI ACNGT 7 cut(s) 467, 623, 1100, 1282, 1783, 1814, 1823
Bst6I CTCTTC 2 cut(s) 660, 1235
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 5 cut(s) 1521, 1536, 1618, 2040, 2137
BstDEI CTNAG 7 cut(s) 881, 937, 963, 1641, 1750, 1767, 1990
BstDSI CCRYGG 3 cut(s) 100, 1782, 2110
BstF5I GGATG 8 cut(s) 209, 817, 1042, 1074, 1116, 1251, 1675, 2130
BstFNI CGCG 1 cut(s) 1958
BstHHI GCGC 2 cut(s) 1006, 2141
BstKTI GATC 5 cut(s) 42, 601, 887, 1061, 1453
BstMAI GTCTC 2 cut(s) 1271, 1434
BstMBI GATC 5 cut(s) 39, 598, 884, 1058, 1450
BstMCI CGRYCG 1 cut(s) 1956
BstNSI RCATGY 1 cut(s) 1495
BstSCI CCNGG 7 cut(s) 629, 707, 1272, 1928, 1929, 1950, 2157
BstSFI CTRYAG 4 cut(s) 769, 915, 1571, 1788
BstUI CGCG 1 cut(s) 1958
BstV2I GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2094
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 3 cut(s) 76, 101, 403
BstYI RGATCY 1 cut(s) 884
Bsu36I CCTNAGG 1 cut(s) 1767
BsuRI GGCC 6 cut(s) 135, 935, 1961, 1970, 2109, 2149
BtgI CCRYGG 3 cut(s) 100, 1782, 2110
BtrI CACGTC 1 cut(s) 1180
BtsCI GGATG 8 cut(s) 209, 817, 1042, 1074, 1116, 1251, 1675, 2130
BtsIMutI CAGTG 7 cut(s) 685, 1819, 1828, 1867, 1969, 2040, 2051
Cac8I GCNNGC 5 cut(s) 1521, 1536, 1618, 2040, 2137
CfoI GCGC 2 cut(s) 1006, 2141
Cfr10I RCCGGY 1 cut(s) 2135
Cfr13I GGNCC 6 cut(s) 52, 134, 470, 856, 1205, 2147
Cfr9I CCCGGG 1 cut(s) 1929
Csp6I GTAC 5 cut(s) 733, 748, 1270, 1416, 1727
CviQI GTAC 5 cut(s) 733, 748, 1270, 1416, 1727
DdeI CTNAG 7 cut(s) 881, 937, 963, 1641, 1750, 1767, 1990
DpnI GATC 5 cut(s) 41, 600, 886, 1060, 1452
DpnII GATC 5 cut(s) 39, 598, 884, 1058, 1450
DraIII CACNNNGTG 2 cut(s) 157, 1412
EaeI YGGCCR 2 cut(s) 1959, 2107
Eam1104I CTCTTC 2 cut(s) 660, 1235
EarI CTCTTC 2 cut(s) 660, 1235
Ecl136II GAGCTC 2 cut(s) 533, 1607
Eco130I CCWWGG 3 cut(s) 100, 2093, 2110
Eco24I GRGCYC 4 cut(s) 535, 655, 1609, 1930
Eco31I GGTCTC 1 cut(s) 1434
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 4 cut(s) 52, 470, 856, 1205
Eco53kI GAGCTC 2 cut(s) 533, 1607
Eco57I CTGAAG 4 cut(s) 968, 1177, 1514, 1725
Eco81I CCTNAGG 1 cut(s) 1767
Eco88I CYCGRG 3 cut(s) 137, 1329, 1929
EcoICRI GAGCTC 2 cut(s) 533, 1607
EcoRI GAATTC 3 cut(s) 439, 703, 1224
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 3 cut(s) 100, 2093, 2110
EcoT38I GRGCYC 4 cut(s) 535, 655, 1609, 1930
ErhI CCWWGG 3 cut(s) 100, 2093, 2110
FalI AAGNNNNNCTT 4 cut(s) 1512, 1544, 2086, 2118
FaqI GGGAC 4 cut(s) 198, 378, 812, 1630
FbaI TGATCA 1 cut(s) 598
FokI GGATG 8 cut(s) 196, 824, 1049, 1081, 1123, 1258, 1662, 2137
FriOI GRGCYC 4 cut(s) 535, 655, 1609, 1930
FspBI CTAG 6 cut(s) 741, 765, 1460, 1467, 1719, 1871
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 2 cut(s) 1005, 2140
GsaI CCCAGC 3 cut(s) 928, 1110, 1124
GsuI CTGGAG 2 cut(s) 1439, 1532
HaeIII GGCC 6 cut(s) 135, 935, 1961, 1970, 2109, 2149
HhaI GCGC 2 cut(s) 1006, 2141
Hin6I GCGC 2 cut(s) 1004, 2139
HinP1I GCGC 2 cut(s) 1004, 2139
HindIII AAGCTT 2 cut(s) 842, 1876
HinfI GANTC 7 cut(s) 5, 160, 391, 774, 792, 1799, 1976
HphI GGTGA 5 cut(s) 650, 825, 1126, 1398, 1589
Hpy166II GTNNAC 6 cut(s) 470, 833, 973, 1117, 1270, 1418
Hpy188III TCNNGA 7 cut(s) 503, 1214, 1370, 1430, 1487, 1580, 1588
Hpy8I GTNNAC 6 cut(s) 470, 833, 973, 1117, 1270, 1418
HpyAV CCTTC 9 cut(s) 103, 169, 237, 246, 253, 989, 1351, 1551, 1689
HpyCH4III ACNGT 7 cut(s) 467, 623, 1100, 1282, 1783, 1814, 1823
HpyCH4IV ACGT 2 cut(s) 414, 1179
HpyCH4V TGCA 7 cut(s) 753, 781, 917, 1573, 1675, 1946, 1997
HpyF3I CTNAG 7 cut(s) 881, 937, 963, 1641, 1750, 1767, 1990
HpySE526I ACGT 2 cut(s) 414, 1179
HspAI GCGC 2 cut(s) 1004, 2139
KpnI GGTACC 1 cut(s) 1730
KroI GCCGGC 1 cut(s) 2135
KroNI GCCGGC 1 cut(s) 2137
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 39, 598, 884, 1058, 1450
LguI GCTCTTC 1 cut(s) 660
LweI GCATC 6 cut(s) 991, 1315, 1603, 1684, 1975, 2072
MaeI CTAG 6 cut(s) 741, 765, 1460, 1467, 1719, 1871
MaeII ACGT 2 cut(s) 414, 1179
MaeIII GTNAC 4 cut(s) 1258, 1404, 1699, 1814
MalI GATC 5 cut(s) 41, 600, 886, 1060, 1452
MboI GATC 5 cut(s) 39, 598, 884, 1058, 1450
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 5 cut(s) 535, 655, 1609, 1887, 1930
MluCI AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1630, 2088
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 225, 2143
MreI CGCCGGCG 1 cut(s) 2135
MroNI GCCGGC 1 cut(s) 2135
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 3 cut(s) 1629, 2010, 2079
MslI CAYNNNNRTG 2 cut(s) 786, 2123
MspA1I CMGCKG 2 cut(s) 1154, 1994
MspR9I CCNGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
Mva1269I GAATGC 1 cut(s) 1946
MvnI CGCG 1 cut(s) 1958
NaeI GCCGGC 1 cut(s) 2137
NciI CCSGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
NcoI CCATGG 2 cut(s) 100, 2110
NdeII GATC 5 cut(s) 39, 598, 884, 1058, 1450
NgoMIV GCCGGC 1 cut(s) 2135
NmuCI GTSAC 2 cut(s) 1404, 1814
NsbI TGCGCA 1 cut(s) 1005
NspI RCATGY 1 cut(s) 1495
NspV TTCGAA 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 1329
PciI ACATGT 1 cut(s) 1491
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PctI GAATGC 1 cut(s) 1946
PdiI GCCGGC 1 cut(s) 2137
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 6 cut(s) 5, 160, 774, 792, 1799, 1976
PflFI GACNNNGTC 1 cut(s) 1856
PflMI CCANNNNNTGG 3 cut(s) 590, 827, 931
PfoI TCCNGGA 1 cut(s) 629
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PscI ACATGT 1 cut(s) 1491
PshBI ATTAAT 1 cut(s) 1629
Psp124BI GAGCTC 2 cut(s) 535, 1609
PspFI CCCAGC 3 cut(s) 924, 1106, 1120
PspPI GGNCC 6 cut(s) 52, 134, 470, 856, 1205, 2147
PspXI VCTCGAGB 1 cut(s) 1329
PstI CTGCAG 2 cut(s) 919, 1575
PsuI RGATCY 1 cut(s) 884
PsyI GACNNNGTC 1 cut(s) 1856
PvuII CAGCTG 2 cut(s) 1154, 1994
RsaI GTAC 5 cut(s) 734, 749, 1271, 1417, 1728
RsaNI GTAC 5 cut(s) 733, 748, 1270, 1416, 1727
RseI CAYNNNNRTG 2 cut(s) 786, 2123
SacI GAGCTC 2 cut(s) 535, 1609
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 1629, 2010, 2079
Sau3AI GATC 5 cut(s) 39, 598, 884, 1058, 1450
Sau96I GGNCC 6 cut(s) 52, 134, 470, 856, 1205, 2147
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 7 cut(s) 631, 709, 1274, 1930, 1931, 1952, 2159
SduI GDGCHC 5 cut(s) 535, 655, 1609, 1887, 1930
SfaNI GCATC 6 cut(s) 991, 1315, 1603, 1684, 1975, 2072
SfcI CTRYAG 4 cut(s) 769, 915, 1571, 1788
SfiI GGCCNNNNNGGCC 1 cut(s) 1967
Sfr274I CTCGAG 1 cut(s) 1329
SfuI TTCGAA 1 cut(s) 364
SgrAI CRCCGGYG 1 cut(s) 2135
SinI GGWCC 4 cut(s) 52, 470, 856, 1205
SlaI CTCGAG 1 cut(s) 1329
SmaI CCCGGG 1 cut(s) 1931
SmiMI CAYNNNNRTG 2 cut(s) 786, 2123
SmlI CTYRAG 8 cut(s) 34, 164, 292, 485, 845, 1126, 1329, 1485
SmoI CTYRAG 8 cut(s) 34, 164, 292, 485, 845, 1126, 1329, 1485
Sse9I AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1630, 2088
SsiI CCGC 5 cut(s) 642, 661, 1017, 1958, 2133
SspMI CTAG 6 cut(s) 741, 765, 1460, 1467, 1719, 1871
SstI GAGCTC 2 cut(s) 535, 1609
StyD4I CCNGG 7 cut(s) 629, 707, 1272, 1928, 1929, 1950, 2157
StyI CCWWGG 3 cut(s) 100, 2093, 2110
TaaI ACNGT 7 cut(s) 467, 623, 1100, 1282, 1783, 1814, 1823
TaiI ACGT 2 cut(s) 417, 1182
TaqI TCGA 4 cut(s) 272, 364, 1057, 1330
TasI AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1630, 2088
TatI WGTACW 1 cut(s) 732
TauI GCSGC 3 cut(s) 1019, 1961, 2135
TfiI GAWTC 6 cut(s) 5, 160, 774, 792, 1799, 1976
Tru1I TTAA 3 cut(s) 1629, 2010, 2079
Tru9I TTAA 3 cut(s) 1629, 2010, 2079
TscAI CASTG 7 cut(s) 685, 1819, 1828, 1867, 1969, 2040, 2058
TseFI GTSAC 2 cut(s) 1404, 1814
Tsp45I GTSAC 2 cut(s) 1404, 1814
TspDTI ATGAA 9 cut(s) 27, 414, 432, 452, 885, 1109, 1671, 1676, 1968
TspGWI ACGGA 1 cut(s) 664
TspMI CCCGGG 1 cut(s) 1929
TspRI CASTG 7 cut(s) 685, 1819, 1828, 1867, 1969, 2040, 2058
Tth111I GACNNNGTC 1 cut(s) 1856
Van91I CCANNNNNTGG 3 cut(s) 590, 827, 931
VpaK11BI GGWCC 4 cut(s) 52, 470, 856, 1205
VspI ATTAAT 1 cut(s) 1629
XapI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2088
XceI RCATGY 1 cut(s) 1495
XcmI CCANNNNNNNNNTGG 1 cut(s) 2050
XhoI CTCGAG 1 cut(s) 1329
XmaI CCCGGG 1 cut(s) 1929
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 6 cut(s) 741, 765, 1460, 1467, 1719, 1871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.