Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002653

Physical Location & Seq

Genomic Coordinates Reverse (-)

26663733 .. 26668421

Gene Structure 4689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1189200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGGGTTCCTATGAACTTACAAACGATTTCGCCGAGAAGGATTTGATTCGTTTGGCTTATGGTCCGGAGACCCTTTTGCACTCGCTGATTCTGAGAGCTAGAATCCAGTTGGGACTTTTGGCAAACAGTTCGTCTGCATCGTCCACTCCTTCGTCTCCCTCACCGTTAAACCCCATAGCCAGACCAACCAACGGCAACCCATTTTCTCAGTCCTCTCCTAGAATACCAAACGGCTTTGACTTTGGAAAAACCCCTTCTTCGCCCTCTTCGAATTCCTGGCCGCTTTCTGGCTTTCCAAGCAACTCTGTTAGCCCAAAGGCAAGCCCTTTCCTCTCTTATGATAATATCCGGGCCGGGTCCTTTTCCCTTCCAGTACATTCACACCAGTTCAGTAAGGATGGTGGTGGTGATGGTTGGCCGGGAAGTGACCTCATCGAGGAGCACCAACTCAACGAATACCTCTCCTTTCTCAACGAGTCCTCTTCCTCGTCGATGCCGGAGGATTTCATTGATCCCAGGCTCGAATTGGGGCATGGGGTTCCTGATTGGGCTCATTCGGTTAACAATGGCGACACCCATTTCCACAGAAGGAGCTATTCGGCCAGCGACGCGTGTCTCGAGTCCGAGGACCCTGCTTTGGGAGTTGGGTTCAAGCCATGTCTTTACTTTGCTAGAGGGTTTTGCAAGAATGGAAACAATTGCAAGTTTGTGCATGGCGATTTTGCTGATTCCGATGGTTCTGGTGCCATTGTGGGGTCTCCCAGTAATCTTGACGGTTTCGAACAGCACGAGGAGATGATGAGGTTGAAAGCCCAGCAACAGAGATTAGCTGCTGCCTCTCAGTTTATGGCTGGAGCGTCCCCTTCTTCGTACAATAAGTACATGAATTTCCTTTTGCAACAGCAGAATGATCCTCAGAGAGTTGCGGCAATGATGATGGGGGAAGAACTTTACAAGTTTGGGCGGTGTCGGCCTGATAGAAACGAACTTTTAGCAATGGCTTCTGTTGAAAAGGCAAGCTCGGCTTCAAGACAGATCTACTTGACATTCCCAGCCGAGAGCACTTTCAGAGATGAAGATGTTTCTGAATACTTCAGCAAGTTTGGGCCAGTTCAAGATGTAAGGATCCCATACCAGCAGAAGCGAATGTTTGGGTTCGTAACATTTGTCTACCCAGAAACTGTCAGGCTTATATTGTCGAAGGGAAACCCTCATTTTATATGTGATTCACGTGTGCTTGTCAAGCCCTACAAGGAGAAGGGAAAAATCCTGGATAAGAGGCAACAGCAACAACAGCATTTAGAGAGGGGAGAATTTTCACCATGTTTGAGCCCTGGTGGTCTTGATTCTAGGGATCCCTATGATCTCCCACTGGGGGGAAGAATGTTCTACAATACACAGGAGATGTTATTGAGAAGAAAATTGGAGGAGCAGGTTGAACTGCAGCAAGCCATTGAGCTACAAGGTAGAAGACTCATGAGTCTGCAGCTCCCGGACTGGAAGAATGATCGCTTACCCCATCATCACCGCAGTCTATCTGTTGGTGCTCATGGTCCTCCCTTGAGCCCTCATTCTCATGCTCAGATCAATCAAAATATCCTTCCATTTGACAGCACTGAACAAGAAGTTGCAGAAGACCACAGTGATACTCCAGCTGCCTCCATCTCTGTGACTGGTGCAGTTGCTGAGCTGCAGCAGCTTCAGATGGAAGATAATTTAGCTTTCATTCACAACAATGTCAATGGCAATGGAAATGGCAAAGACAAGGAGCAAGGCTCGAACCTGGATGCCCCAAATCTTCATAAAATTGTAGAGCAGGTCCTGCCTGATAGCCTCTTTGCTTCTCCTACAAATTCCGCTGGAGATCATCTCTCGGCCTTGTCAACCGCTGTACCCAAAGTTAATGATACCGCCATTACTACTGAAACAAACACATCATCATCGTCGTCGTCATCAGTCAATGCTGCTGGCTTCATTGCTTCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

663

Amino Acids

72.8

Weight (kDa)

5.64

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PABC_AtC3H46	PF23182	6 - 41	2.5e-09	AtC3H46 PABC domain
RRM_1	PF00076	357 - 403	1.1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51520 AT1G51520 AT1G51530 AT1G51530 AT3G21100 AT3G21100 AT3G21100 AT3G21100 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440
fragaria_vesca	FvH4_3g28410 FvH4_3g28410 FvH4_3g28410
malus_domestica	MD00G1177200.v1.1 MD03G1171700.v1.1 MD11G1189200.v1.1
prunus_persica	Prupe.4G255200_v2.0.a1
pyrus_communis	pycom03g12880 pycom11g16560
rosa_chinensis	RchiOBHm_Chr5g0053291
rosa_laevigata	RLG00000034771
rosa_multiflora	Rmu_sc0001966.1_g000018
rosa_roxburghii	Rroxscaffold_1G00029030
rosa_rugosa	Rorug05G0267800 Rorug05G0267900
rosa_samantha	Rh5AG340200 Rh5BG350900 Rh5CG377100 Rh5DG364800
rosa_wichuraiana	Rw5G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1479
Acc36I	ACCTGC	2 cut(s)	1423, 1807
AccB1I	GGYRCC	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	1170
AccII	CGCG	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	7 cut(s)	281, 926, 964, 1528, 1857, 1887, 1911
AclWI	GGATC	6 cut(s)	506, 905, 1120, 1133, 1349, 1362
AcoI	YGGCCR	3 cut(s)	278, 416, 600
AcsI	RAATTY	4 cut(s)	271, 886, 1313, 1852
AcuI	CTGAAG	2 cut(s)	1078, 1685
AcvI	CACGTG	1 cut(s)	1232
AfaI	GTAC	4 cut(s)	375, 872, 881, 1893
AfiI	CCNNNNNNNGG	8 cut(s)	191, 287, 436, 637, 638, 753, 1375, 1376
AflIII	ACRYGT	2 cut(s)	609, 1231
AgsI	TTSAA	6 cut(s)	652, 808, 1010, 1029, 1115, 1439
AjnI	CCWGG	5 cut(s)	275, 515, 1269, 1333, 1782
Alw21I	GWGCWC	3 cut(s)	444, 1064, 1549
Alw26I	GTCTC	4 cut(s)	62, 159, 620, 762
AlwI	GGATC	6 cut(s)	506, 905, 1120, 1133, 1349, 1362
AlwNI	CAGNNNCTG	3 cut(s)	1181, 1685, 1822
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	7 cut(s)	278, 351, 416, 600, 971, 1106, 1875
ApeKI	GCWGC	9 cut(s)	830, 833, 1444, 1486, 1655, 1690, 1693, 1696, 1964
ApoI	RAATTY	4 cut(s)	271, 886, 1313, 1852
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	7 cut(s)	62, 351, 357, 628, 1106, 1553, 1819
AsuC2I	CCSGG	4 cut(s)	350, 355, 420, 1493
AsuHPI	GGTGA	4 cut(s)	153, 419, 1311, 1517
AsuII	TTCGAA	2 cut(s)	269, 780
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	5 cut(s)	62, 357, 628, 1553, 1819
BaeI	ACNNNNGTAYC	2 cut(s)	1875, 1908
BamHI	GGATCC	2 cut(s)	1125, 1354
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	3 cut(s)	553, 1334, 1568
BauI	CACGAG	1 cut(s)	788
BbrPI	CACGTG	1 cut(s)	1232
BbsI	GAAGAC	2 cut(s)	1477, 1641
Bbv12I	GWGCWC	3 cut(s)	444, 1064, 1549
BbvI	GCAGC	9 cut(s)	817, 820, 1456, 1498, 1642, 1677, 1705, 1708, 1951
BccI	CCATC	7 cut(s)	392, 404, 728, 931, 1527, 1670, 1699
BceAI	ACGGC	2 cut(s)	208, 247
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 614, 648
BciT130I	CCWGG	5 cut(s)	277, 517, 1271, 1335, 1784
BcnI	CCSGG	4 cut(s)	350, 355, 420, 1493
BcoDI	GTCTC	4 cut(s)	62, 159, 620, 762
BfaI	CTAG	4 cut(s)	99, 219, 672, 1350
BfmI	CTRYAG	3 cut(s)	1442, 1484, 1691
BfuAI	ACCTGC	2 cut(s)	1423, 1807
BglII	AGATCT	1 cut(s)	1035
BlpI	GCTNAGC	1 cut(s)	1686
Bme1390I	CCNGG	9 cut(s)	277, 350, 355, 420, 517, 1271, 1335, 1493, 1784
Bme18I	GGWCC	5 cut(s)	62, 357, 628, 1553, 1819
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	7 cut(s)	62, 351, 357, 628, 1106, 1553, 1819
BmiI	GGNNCC	7 cut(s)	7, 358, 540, 630, 745, 1127, 1356
BmrFI	CCNGG	9 cut(s)	277, 350, 355, 420, 517, 1271, 1335, 1493, 1784
BmrI	ACTGGG	2 cut(s)	756, 1382
BmsI	GCATC	3 cut(s)	146, 483, 1777
BmuI	ACTGGG	2 cut(s)	756, 1382
BoxI	GACNNNNGTC	1 cut(s)	612
BpiI	GAAGAC	2 cut(s)	1477, 1641
BplI	GAGNNNNNCTC	4 cut(s)	1760, 1792, 1854, 1886
BpmI	CTGGAG	3 cut(s)	873, 1635, 1881
Bpu1102I	GCTNAGC	1 cut(s)	1686
Bpu14I	TTCGAA	2 cut(s)	269, 780
BpuEI	CTTGAG	1 cut(s)	1582
BpuMI	CCSGG	4 cut(s)	350, 355, 420, 1493
BsaAI	YACGTR	1 cut(s)	1232
BsaI	GGTCTC	2 cut(s)	62, 762
BsaJI	CCNNGG	3 cut(s)	515, 624, 1333
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	8 cut(s)	191, 287, 436, 637, 638, 753, 1375, 1376
Bse1I	ACTGG	8 cut(s)	106, 371, 385, 762, 1109, 1377, 1502, 1678
Bse3DI	GCAATG	4 cut(s)	936, 1002, 1753, 1974
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	5 cut(s)	277, 517, 1271, 1335, 1784
BseDI	CCNNGG	3 cut(s)	515, 624, 1333
BseGI	GGATG	2 cut(s)	403, 1792
BseLI	CCNNNNNNNGG	8 cut(s)	191, 287, 436, 637, 638, 753, 1375, 1376
BseMI	GCAATG	4 cut(s)	936, 1002, 1753, 1974
BseMII	CTCAG	6 cut(s)	83, 221, 854, 929, 1595, 1677
BseNI	ACTGG	8 cut(s)	106, 371, 385, 762, 1109, 1377, 1502, 1678
BseRI	GAGGAG	3 cut(s)	452, 806, 1442
BseXI	GCAGC	9 cut(s)	817, 820, 1456, 1498, 1642, 1677, 1705, 1708, 1951
BseYI	CCCAGC	2 cut(s)	813, 1051
BsgI	GTGCAG	1 cut(s)	1698
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	7 cut(s)	280, 353, 418, 602, 973, 1108, 1877
BshNI	GGYRCC	1 cut(s)	743
BsiHKAI	GWGCWC	3 cut(s)	444, 1064, 1549
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	6 cut(s)	65, 349, 354, 419, 497, 1493
BslFI	GGGAC	2 cut(s)	126, 844
BslI	CCNNNNNNNGG	8 cut(s)	191, 287, 436, 637, 638, 753, 1375, 1376
BsmAI	GTCTC	4 cut(s)	62, 159, 620, 762
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	126, 844
BsnI	GGCC	7 cut(s)	280, 353, 418, 602, 973, 1108, 1877
Bso31I	GGTCTC	2 cut(s)	62, 762
BsoBI	CYCGRG	1 cut(s)	617
Bsp119I	TTCGAA	2 cut(s)	269, 780
Bsp1286I	GDGCHC	6 cut(s)	444, 553, 1064, 1334, 1549, 1568
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
Bsp1720I	GCTNAGC	1 cut(s)	1686
BspACI	CCGC	7 cut(s)	281, 926, 964, 1528, 1857, 1887, 1911
BspANI	GGCC	7 cut(s)	280, 353, 418, 602, 973, 1108, 1877
BspCNI	CTCAG	6 cut(s)	84, 220, 853, 928, 1594, 1678
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	1476
BspLI	GGNNCC	7 cut(s)	7, 358, 540, 630, 745, 1127, 1356
BspMAI	CTGCAG	3 cut(s)	1446, 1488, 1695
BspMI	ACCTGC	2 cut(s)	1423, 1807
BspPI	GGATC	6 cut(s)	506, 905, 1120, 1133, 1349, 1362
BspT104I	TTCGAA	2 cut(s)	269, 780
BspT107I	GGYRCC	1 cut(s)	743
BspTNI	GGTCTC	2 cut(s)	62, 762
BsrDI	GCAATG	4 cut(s)	936, 1002, 1753, 1974
BsrI	ACTGG	8 cut(s)	106, 371, 385, 762, 1109, 1377, 1502, 1678
BssECI	CCNNGG	3 cut(s)	515, 624, 1333
BssMI	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
BssSI	CACGAG	1 cut(s)	788
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	5 cut(s)	277, 517, 1271, 1335, 1784
Bst4CI	ACNGT	5 cut(s)	128, 165, 776, 1183, 1643
Bst6I	CTCTTC	2 cut(s)	271, 487
BstAPI	GCANNNNNTGC	1 cut(s)	1822
BstBAI	YACGTR	1 cut(s)	1232
BstBI	TTCGAA	2 cut(s)	269, 780
BstC8I	GCNNGC	5 cut(s)	322, 604, 1018, 1449, 1969
BstDEI	CTNAG	6 cut(s)	92, 207, 840, 915, 1581, 1686
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	403, 1792
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	9 cut(s)	514, 913, 1038, 1128, 1357, 1366, 1510, 1587, 1867
BstMAI	GTCTC	4 cut(s)	62, 159, 620, 762
BstMBI	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
BstMWI	GCNNNNNNNGC	8 cut(s)	297, 608, 970, 1022, 1243, 1294, 1696, 1822
BstNI	CCWGG	5 cut(s)	277, 517, 1271, 1335, 1784
BstPAI	GACNNNNGTC	1 cut(s)	612
BstSCI	CCNGG	9 cut(s)	275, 348, 353, 418, 515, 1269, 1333, 1491, 1782
BstSFI	CTRYAG	3 cut(s)	1442, 1484, 1691
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	9 cut(s)	817, 820, 1456, 1498, 1642, 1677, 1705, 1708, 1951
BstV2I	GAAGAC	2 cut(s)	1477, 1641
BstX2I	RGATCY	3 cut(s)	1035, 1125, 1354
BstYI	RGATCY	3 cut(s)	1035, 1125, 1354
BsuRI	GGCC	7 cut(s)	280, 353, 418, 602, 973, 1108, 1877
BtsCI	GGATG	2 cut(s)	403, 1792
BtsIMutI	CAGTG	3 cut(s)	1370, 1614, 1648
BveI	ACCTGC	2 cut(s)	1423, 1807
Cac8I	GCNNGC	5 cut(s)	322, 604, 1018, 1449, 1969
CaiI	CAGNNNCTG	3 cut(s)	1181, 1685, 1822
CciI	TCATGA	1 cut(s)	1476
Cfr13I	GGNCC	7 cut(s)	62, 351, 357, 628, 1106, 1553, 1819
CseI	GACGC	2 cut(s)	617, 846
Csp6I	GTAC	4 cut(s)	374, 871, 880, 1892
CviAII	CATG	8 cut(s)	533, 657, 713, 883, 1323, 1477, 1550, 1577
CviQI	GTAC	4 cut(s)	374, 871, 880, 1892
DdeI	CTNAG	6 cut(s)	92, 207, 840, 915, 1581, 1686
DpnI	GATC	9 cut(s)	513, 912, 1037, 1127, 1356, 1365, 1509, 1586, 1866
DpnII	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
DrdI	GACNNNNNNGTC	1 cut(s)	1479
DseDI	GACNNNNNNGTC	1 cut(s)	1479
EaeI	YGGCCR	3 cut(s)	278, 416, 600
Eam1104I	CTCTTC	2 cut(s)	271, 487
EarI	CTCTTC	2 cut(s)	271, 487
Eco24I	GRGCYC	3 cut(s)	553, 1334, 1568
Eco31I	GGTCTC	2 cut(s)	62, 762
Eco47I	GGWCC	5 cut(s)	62, 357, 628, 1553, 1819
Eco57I	CTGAAG	2 cut(s)	1078, 1685
Eco72I	CACGTG	1 cut(s)	1232
Eco88I	CYCGRG	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	3 cut(s)	357, 628, 1819
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	5 cut(s)	275, 515, 1269, 1333, 1782
EcoT38I	GRGCYC	3 cut(s)	553, 1334, 1568
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	8 cut(s)	536, 660, 716, 886, 1326, 1480, 1553, 1580
FalI	AAGNNNNNCTT	2 cut(s)	1009, 1041
FaqI	GGGAC	2 cut(s)	126, 844
FatI	CATG	8 cut(s)	532, 656, 712, 882, 1322, 1476, 1549, 1576
FblI	GTMKAC	1 cut(s)	1170
FokI	GGATG	2 cut(s)	410, 1799
FriOI	GRGCYC	3 cut(s)	553, 1334, 1568
FspBI	CTAG	4 cut(s)	99, 219, 672, 1350
GsaI	CCCAGC	2 cut(s)	817, 1055
GsuI	CTGGAG	3 cut(s)	873, 1635, 1881
HaeIII	GGCC	7 cut(s)	280, 353, 418, 602, 973, 1108, 1877
HapII	CCGG	6 cut(s)	65, 349, 354, 419, 497, 1493
HgaI	GACGC	2 cut(s)	617, 846
Hin1II	CATG	8 cut(s)	536, 660, 716, 886, 1326, 1480, 1553, 1580
HincII	GTYRAC	2 cut(s)	562, 1884
HindII	GTYRAC	2 cut(s)	562, 1884
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	6 cut(s)	65, 349, 354, 419, 497, 1493
HphI	GGTGA	4 cut(s)	153, 419, 1311, 1517
Hpy166II	GTNNAC	4 cut(s)	144, 562, 1171, 1884
Hpy188I	TCNGA	8 cut(s)	93, 625, 733, 918, 1070, 1087, 1584, 1704
Hpy188III	TCNNGA	8 cut(s)	65, 542, 617, 770, 1029, 1115, 1343, 1477
Hpy8I	GTNNAC	4 cut(s)	144, 562, 1171, 1884
Hpy99I	CGWCG	4 cut(s)	493, 611, 1948, 1951
HpyAV	CCTTC	9 cut(s)	31, 159, 264, 377, 582, 873, 1195, 1252, 1610
HpyCH4III	ACNGT	5 cut(s)	128, 165, 776, 1183, 1643
HpyCH4IV	ACGT	1 cut(s)	1231
HpyF10VI	GCNNNNNNNGC	8 cut(s)	297, 608, 970, 1022, 1243, 1294, 1696, 1822
HpyF3I	CTNAG	6 cut(s)	92, 207, 840, 915, 1581, 1686
HpySE526I	ACGT	1 cut(s)	1231
Hsp92II	CATG	8 cut(s)	536, 660, 716, 886, 1326, 1480, 1553, 1580
Kpn2I	TCCGGA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
LmnI	GCTCC	6 cut(s)	439, 591, 854, 1429, 1494, 1768
Lsp1109I	GCAGC	9 cut(s)	817, 820, 1456, 1498, 1642, 1677, 1705, 1708, 1951
LweI	GCATC	3 cut(s)	146, 483, 1777
MaeI	CTAG	4 cut(s)	99, 219, 672, 1350
MaeII	ACGT	1 cut(s)	1231
MaeIII	GTNAC	3 cut(s)	425, 1159, 1669
MalI	GATC	9 cut(s)	513, 912, 1037, 1127, 1356, 1365, 1509, 1586, 1866
MboI	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	3 cut(s)	1035, 1125, 1354
MhlI	GDGCHC	6 cut(s)	444, 553, 1064, 1334, 1549, 1568
MluCI	AATT	9 cut(s)	271, 524, 697, 886, 1313, 1421, 1714, 1806, 1852
MluI	ACGCGT	1 cut(s)	609
MlyI	GAGTC	4 cut(s)	485, 629, 1467, 1489
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	3 cut(s)	167, 561, 1902
MslI	CAYNNNNRTG	3 cut(s)	1575, 1667, 1734
MspA1I	CMGCKG	3 cut(s)	1655, 1859, 1889
MspI	CCGG	6 cut(s)	65, 349, 354, 419, 497, 1493
MspR9I	CCNGG	9 cut(s)	277, 350, 355, 420, 517, 1271, 1335, 1493, 1784
MunI	CAATTG	1 cut(s)	697
MvaI	CCWGG	5 cut(s)	277, 517, 1271, 1335, 1784
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	8 cut(s)	297, 608, 970, 1022, 1243, 1294, 1696, 1822
NciI	CCSGG	4 cut(s)	350, 355, 420, 1493
NdeII	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
NlaIII	CATG	8 cut(s)	536, 660, 716, 886, 1326, 1480, 1553, 1580
NlaIV	GGNNCC	7 cut(s)	7, 358, 540, 630, 745, 1127, 1356
NmeAIII	GCCGAG	4 cut(s)	58, 1001, 1081, 1853
NmuCI	GTSAC	2 cut(s)	425, 1669
NspV	TTCGAA	2 cut(s)	269, 780
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	1476
PcsI	WCGNNNNNNNCGW	5 cut(s)	30, 137, 266, 615, 786
PfeI	GAWTC	6 cut(s)	46, 88, 102, 728, 1226, 1346
PfoI	TCCNGGA	2 cut(s)	1269, 1491
PleI	GAGTC	4 cut(s)	484, 628, 1467, 1488
PmaCI	CACGTG	1 cut(s)	1232
PmlI	CACGTG	1 cut(s)	1232
PpsI	GAGTC	4 cut(s)	484, 628, 1467, 1488
Ppu21I	YACGTR	1 cut(s)	1232
PpuMI	RGGWCCY	3 cut(s)	357, 628, 1819
PshAI	GACNNNNGTC	1 cut(s)	612
Psp5II	RGGWCCY	3 cut(s)	357, 628, 1819
Psp6I	CCWGG	5 cut(s)	275, 515, 1269, 1333, 1782
PspCI	CACGTG	1 cut(s)	1232
PspFI	CCCAGC	2 cut(s)	813, 1051
PspGI	CCWGG	5 cut(s)	275, 515, 1269, 1333, 1782
PspN4I	GGNNCC	7 cut(s)	7, 358, 540, 630, 745, 1127, 1356
PspPI	GGNCC	7 cut(s)	62, 351, 357, 628, 1106, 1553, 1819
PspPPI	RGGWCCY	3 cut(s)	357, 628, 1819
PstI	CTGCAG	3 cut(s)	1446, 1488, 1695
PstNI	CAGNNNCTG	3 cut(s)	1181, 1685, 1822
PsuI	RGATCY	3 cut(s)	1035, 1125, 1354
PvuII	CAGCTG	1 cut(s)	1655
RsaI	GTAC	4 cut(s)	375, 872, 881, 1893
RsaNI	GTAC	4 cut(s)	374, 871, 880, 1892
RseI	CAYNNNNRTG	3 cut(s)	1575, 1667, 1734
SaqAI	TTAA	3 cut(s)	167, 561, 1902
Sau3AI	GATC	9 cut(s)	511, 910, 1035, 1125, 1354, 1363, 1507, 1584, 1864
Sau96I	GGNCC	7 cut(s)	62, 351, 357, 628, 1106, 1553, 1819
SchI	GAGTC	4 cut(s)	485, 629, 1467, 1489
ScrFI	CCNGG	9 cut(s)	277, 350, 355, 420, 517, 1271, 1335, 1493, 1784
SduI	GDGCHC	6 cut(s)	444, 553, 1064, 1334, 1549, 1568
SfaNI	GCATC	3 cut(s)	146, 483, 1777
SfcI	CTRYAG	3 cut(s)	1442, 1484, 1691
Sfr274I	CTCGAG	1 cut(s)	617
SfuI	TTCGAA	2 cut(s)	269, 780
SinI	GGWCC	5 cut(s)	62, 357, 628, 1553, 1819
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	3 cut(s)	1575, 1667, 1734
SmlI	CTYRAG	2 cut(s)	617, 1561
SmoI	CTYRAG	2 cut(s)	617, 1561
Sse9I	AATT	9 cut(s)	271, 524, 697, 886, 1313, 1421, 1714, 1806, 1852
SsiI	CCGC	7 cut(s)	281, 926, 964, 1528, 1857, 1887, 1911
SspMI	CTAG	4 cut(s)	99, 219, 672, 1350
StyD4I	CCNGG	9 cut(s)	275, 348, 353, 418, 515, 1269, 1333, 1491, 1782
TaaI	ACNGT	5 cut(s)	128, 165, 776, 1183, 1643
TaiI	ACGT	1 cut(s)	1234
TaqI	TCGA	8 cut(s)	269, 435, 491, 522, 618, 780, 1199, 1778
TasI	AATT	9 cut(s)	271, 524, 697, 886, 1313, 1421, 1714, 1806, 1852
TatI	WGTACW	2 cut(s)	373, 879
TauI	GCSGC	2 cut(s)	283, 929
TfiI	GAWTC	6 cut(s)	46, 88, 102, 728, 1226, 1346
Tru1I	TTAA	3 cut(s)	167, 561, 1902
Tru9I	TTAA	3 cut(s)	167, 561, 1902
TscAI	CASTG	3 cut(s)	1377, 1621, 1648
TseFI	GTSAC	2 cut(s)	425, 1669
TseI	GCWGC	9 cut(s)	830, 833, 1444, 1486, 1655, 1690, 1693, 1696, 1964
Tsp45I	GTSAC	2 cut(s)	425, 1669
TspDTI	ATGAA	7 cut(s)	27, 496, 899, 1089, 1714, 1790, 1963
TspRI	CASTG	3 cut(s)	1377, 1621, 1648
VpaK11BI	GGWCC	5 cut(s)	62, 357, 628, 1553, 1819
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	4 cut(s)	271, 886, 1313, 1852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	1170
XspI	CTAG	4 cut(s)	99, 219, 672, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.