zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G51520 AT1G51520 AT1G51530 AT1G51530 AT3G21100 AT3G21100 AT3G21100 AT3G21100 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 |
| fragaria_vesca | FvH4_3g28410 FvH4_3g28410 FvH4_3g28410 |
| malus_domestica | MD00G1177200.v1.1 MD03G1171700.v1.1 MD11G1189200.v1.1 |
| prunus_persica | Prupe.4G255200_v2.0.a1 |
| pyrus_communis | pycom03g12880 pycom11g16560 |
| rosa_chinensis | RchiOBHm_Chr5g0053291 |
| rosa_laevigata | RLG00000034771 |
| rosa_multiflora | Rmu_sc0001966.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00029030 |
| rosa_rugosa | Rorug05G0267800 Rorug05G0267900 |
| rosa_samantha | Rh5AG340200 Rh5BG350900 Rh5CG377100 Rh5DG364800 |
| rosa_wichuraiana | Rw5G032120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1900 |
| AccB1I | GGYRCC | 1 cut(s) | 1086 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 320, 366 |
| AccBSI | CCGCTC | 1 cut(s) | 458 |
| AccI | GTMKAC | 1 cut(s) | 1290 |
| AccII | CGCG | 2 cut(s) | 441, 1351 |
| AccIII | TCCGGA | 1 cut(s) | 640 |
| AciI | CCGC | 7 cut(s) | 127, 439, 458, 839, 1046, 1061, 1624 |
| AclWI | GGATC | 4 cut(s) | 605, 1025, 1463, 1970 |
| AcoI | YGGCCR | 1 cut(s) | 840 |
| AcsI | RAATTY | 4 cut(s) | 1006, 1245, 1427, 1945 |
| AcuI | CTGAAG | 3 cut(s) | 744, 1198, 1808 |
| AfaI | GTAC | 2 cut(s) | 557, 1242 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 320, 366, 445, 591, 717, 741, 742 |
| AflIII | ACRYGT | 1 cut(s) | 1900 |
| AjnI | CCWGG | 5 cut(s) | 485, 590, 735, 1148, 1389 |
| AleI | CACNNNNGTG | 1 cut(s) | 2072 |
| AluBI | AGCT | 8 cut(s) | 693, 889, 1043, 1175, 1603, 1740, 1869, 1883 |
| AluI | AGCT | 8 cut(s) | 693, 889, 1043, 1175, 1603, 1740, 1869, 1883 |
| Alw21I | GWGCWC | 3 cut(s) | 543, 1184, 1678 |
| Alw26I | GTCTC | 2 cut(s) | 990, 1979 |
| AlwI | GGATC | 4 cut(s) | 605, 1025, 1463, 1970 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1301, 1811 |
| Ama87I | CYCGRG | 1 cut(s) | 862 |
| Aor13HI | TCCGGA | 1 cut(s) | 640 |
| AoxI | GGCC | 8 cut(s) | 139, 368, 593, 840, 977, 1134, 1226, 1762 |
| ApoI | RAATTY | 4 cut(s) | 1006, 1245, 1427, 1945 |
| AseI | ATTAAT | 1 cut(s) | 1589 |
| AspLEI | GCGC | 2 cut(s) | 278, 443 |
| AspS9I | GGNCC | 5 cut(s) | 140, 516, 977, 1226, 1912 |
| AsuC2I | CCSGG | 2 cut(s) | 445, 616 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 518, 680 |
| AvaI | CYCGRG | 1 cut(s) | 862 |
| AvaII | GGWCC | 2 cut(s) | 516, 1912 |
| BanI | GGYRCC | 1 cut(s) | 1086 |
| BanII | GRGCYC | 3 cut(s) | 652, 1448, 1694 |
| BbsI | GAAGAC | 1 cut(s) | 1071 |
| Bbv12I | GWGCWC | 3 cut(s) | 543, 1184, 1678 |
| BbvCI | CCTCAGC | 1 cut(s) | 908 |
| BccI | CCATC | 7 cut(s) | 80, 352, 497, 869, 988, 1051, 1656 |
| BceAI | ACGGC | 1 cut(s) | 739 |
| BciT130I | CCWGG | 5 cut(s) | 487, 592, 737, 1150, 1391 |
| BcnI | CCSGG | 2 cut(s) | 445, 616 |
| BcoDI | GTCTC | 2 cut(s) | 990, 1979 |
| BfaI | CTAG | 2 cut(s) | 702, 771 |
| BfmI | CTRYAG | 3 cut(s) | 890, 1598, 1965 |
| BfoI | RGCGCY | 1 cut(s) | 279 |
| BfuAI | ACCTGC | 1 cut(s) | 1900 |
| BglII | AGATCT | 2 cut(s) | 103, 1155 |
| BmcAI | AGTACT | 1 cut(s) | 557 |
| Bme1390I | CCNGG | 7 cut(s) | 445, 487, 592, 616, 737, 1150, 1391 |
| Bme18I | GGWCC | 2 cut(s) | 516, 1912 |
| BmeT110I | CYCGRG | 1 cut(s) | 862 |
| BmgT120I | GGNCC | 5 cut(s) | 140, 516, 977, 1226, 1912 |
| BmiI | GGNNCC | 3 cut(s) | 60, 859, 1088 |
| BmrFI | CCNGG | 7 cut(s) | 445, 487, 592, 616, 737, 1150, 1391 |
| BmrI | ACTGGG | 2 cut(s) | 655, 1496 |
| BmsI | GCATC | 7 cut(s) | 114, 230, 697, 718, 826, 894, 1509 |
| BmuI | ACTGGG | 2 cut(s) | 655, 1496 |
| BpiI | GAAGAC | 1 cut(s) | 1071 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 566, 598, 1853, 1885 |
| BpmI | CTGGAG | 2 cut(s) | 471, 993 |
| Bpu10I | CCTNAGC | 1 cut(s) | 908 |
| BpuEI | CTTGAG | 1 cut(s) | 1708 |
| BpuMI | CCSGG | 2 cut(s) | 445, 616 |
| BsaJI | CCNNGG | 5 cut(s) | 444, 614, 735, 736, 1576 |
| BsaWI | WCCGGW | 2 cut(s) | 518, 640 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 320, 366, 445, 591, 717, 741, 742 |
| Bse118I | RCCGGY | 1 cut(s) | 842 |
| Bse1I | ACTGG | 5 cut(s) | 184, 411, 650, 1229, 1491 |
| Bse3DI | GCAATG | 1 cut(s) | 1122 |
| BseAI | TCCGGA | 1 cut(s) | 640 |
| BseBI | CCWGG | 5 cut(s) | 487, 592, 737, 1150, 1391 |
| BseDI | CCNNGG | 5 cut(s) | 444, 614, 735, 736, 1576 |
| BseGI | GGATG | 2 cut(s) | 435, 841 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 320, 366, 445, 591, 717, 741, 742 |
| BseMI | GCAATG | 1 cut(s) | 1122 |
| BseMII | CTCAG | 6 cut(s) | 308, 899, 974, 1167, 1803, 1884 |
| BseNI | ACTGG | 5 cut(s) | 184, 411, 650, 1229, 1491 |
| BseRI | GAGGAG | 6 cut(s) | 468, 571, 574, 703, 914, 1556 |
| BseX3I | CGGCCG | 1 cut(s) | 840 |
| BseYI | CCCAGC | 1 cut(s) | 1632 |
| Bsh1236I | CGCG | 2 cut(s) | 441, 1351 |
| Bsh1285I | CGRYCG | 1 cut(s) | 843 |
| BshFI | GGCC | 8 cut(s) | 141, 370, 595, 842, 979, 1136, 1228, 1764 |
| BshNI | GGYRCC | 1 cut(s) | 1086 |
| BsiEI | CGRYCG | 1 cut(s) | 843 |
| BsiHKAI | GWGCWC | 3 cut(s) | 543, 1184, 1678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 862 |
| BsiSI | CCGG | 6 cut(s) | 444, 495, 519, 616, 641, 843 |
| BslFI | GGGAC | 2 cut(s) | 204, 733 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 320, 366, 445, 591, 717, 741, 742 |
| BsmAI | GTCTC | 2 cut(s) | 990, 1979 |
| BsmBI | CGTCTC | 1 cut(s) | 990 |
| BsmFI | GGGAC | 2 cut(s) | 204, 733 |
| BsmI | GAATGC | 2 cut(s) | 481, 1503 |
| BsnI | GGCC | 8 cut(s) | 141, 370, 595, 842, 979, 1136, 1228, 1764 |
| BsoBI | CYCGRG | 1 cut(s) | 862 |
| Bsp1286I | GDGCHC | 6 cut(s) | 543, 652, 1184, 1448, 1678, 1694 |
| Bsp13I | TCCGGA | 1 cut(s) | 640 |
| BspACI | CCGC | 7 cut(s) | 127, 439, 458, 839, 1046, 1061, 1624 |
| BspANI | GGCC | 8 cut(s) | 141, 370, 595, 842, 979, 1136, 1228, 1764 |
| BspCNI | CTCAG | 6 cut(s) | 307, 900, 973, 1168, 1804, 1883 |
| BspEI | TCCGGA | 1 cut(s) | 640 |
| BspFNI | CGCG | 2 cut(s) | 441, 1351 |
| BspHI | TCATGA | 2 cut(s) | 1053, 1885 |
| BspLI | GGNNCC | 3 cut(s) | 60, 859, 1088 |
| BspMAI | CTGCAG | 1 cut(s) | 1602 |
| BspMI | ACCTGC | 1 cut(s) | 1900 |
| BspPI | GGATC | 4 cut(s) | 605, 1025, 1463, 1970 |
| BspT107I | GGYRCC | 1 cut(s) | 1086 |
| BsrBI | CCGCTC | 1 cut(s) | 458 |
| BsrDI | GCAATG | 1 cut(s) | 1122 |
| BsrFI | RCCGGY | 1 cut(s) | 842 |
| BsrI | ACTGG | 5 cut(s) | 184, 411, 650, 1229, 1491 |
| BssAI | RCCGGY | 1 cut(s) | 842 |
| BssECI | CCNNGG | 5 cut(s) | 444, 614, 735, 736, 1576 |
| BssT1I | CCWWGG | 1 cut(s) | 1576 |
| Bst2UI | CCWGG | 5 cut(s) | 487, 592, 737, 1150, 1391 |
| Bst4CI | ACNGT | 6 cut(s) | 15, 320, 1086, 1303, 1317, 1807 |
| Bst6I | CTCTTC | 2 cut(s) | 241, 592 |
| BstC8I | GCNNGC | 2 cut(s) | 1548, 1563 |
| BstDEI | CTNAG | 8 cut(s) | 294, 908, 960, 1176, 1812, 1870, 1941, 2082 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 589 |
| BstF5I | GGATG | 2 cut(s) | 435, 841 |
| BstFNI | CGCG | 2 cut(s) | 441, 1351 |
| BstH2I | RGCGCY | 1 cut(s) | 279 |
| BstHHI | GCGC | 2 cut(s) | 278, 443 |
| BstMAI | GTCTC | 2 cut(s) | 990, 1979 |
| BstMCI | CGRYCG | 1 cut(s) | 843 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 455, 487, 707, 822, 892, 953, 1142, 1363 |
| BstNI | CCWGG | 5 cut(s) | 487, 592, 737, 1150, 1391 |
| BstSCI | CCNGG | 7 cut(s) | 443, 485, 590, 614, 735, 1148, 1389 |
| BstSFI | CTRYAG | 3 cut(s) | 890, 1598, 1965 |
| BstUI | CGCG | 2 cut(s) | 441, 1351 |
| BstV2I | GAAGAC | 1 cut(s) | 1071 |
| BstX2I | RGATCY | 4 cut(s) | 103, 1155, 1468, 1975 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2074 |
| BstYI | RGATCY | 4 cut(s) | 103, 1155, 1468, 1975 |
| BstZI | CGGCCG | 1 cut(s) | 840 |
| BsuRI | GGCC | 8 cut(s) | 141, 370, 595, 842, 979, 1136, 1228, 1764 |
| BtsCI | GGATG | 2 cut(s) | 435, 841 |
| BtsIMutI | CAGTG | 1 cut(s) | 837 |
| BveI | ACCTGC | 1 cut(s) | 1900 |
| Cac8I | GCNNGC | 2 cut(s) | 1548, 1563 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1301, 1811 |
| CciI | TCATGA | 2 cut(s) | 1053, 1885 |
| CfoI | GCGC | 2 cut(s) | 278, 443 |
| Cfr10I | RCCGGY | 1 cut(s) | 842 |
| Cfr13I | GGNCC | 5 cut(s) | 140, 516, 977, 1226, 1912 |
| Csp6I | GTAC | 2 cut(s) | 556, 1241 |
| CviAII | CATG | 8 cut(s) | 82, 632, 812, 896, 1054, 1437, 1703, 1886 |
| CviQI | GTAC | 2 cut(s) | 556, 1241 |
| DdeI | CTNAG | 8 cut(s) | 294, 908, 960, 1176, 1812, 1870, 1941, 2082 |
| EaeI | YGGCCR | 1 cut(s) | 840 |
| EagI | CGGCCG | 1 cut(s) | 840 |
| Eam1104I | CTCTTC | 2 cut(s) | 241, 592 |
| EarI | CTCTTC | 2 cut(s) | 241, 592 |
| EciI | GGCGGA | 1 cut(s) | 1076 |
| EclXI | CGGCCG | 1 cut(s) | 840 |
| Eco130I | CCWWGG | 1 cut(s) | 1576 |
| Eco147I | AGGCCT | 2 cut(s) | 595, 1764 |
| Eco24I | GRGCYC | 3 cut(s) | 652, 1448, 1694 |
| Eco47I | GGWCC | 2 cut(s) | 516, 1912 |
| Eco52I | CGGCCG | 1 cut(s) | 840 |
| Eco57I | CTGAAG | 3 cut(s) | 744, 1198, 1808 |
| Eco88I | CYCGRG | 1 cut(s) | 862 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 589 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1912 |
| EcoRI | GAATTC | 2 cut(s) | 1245, 1945 |
| EcoRII | CCWGG | 5 cut(s) | 485, 590, 735, 1148, 1389 |
| EcoT14I | CCWWGG | 1 cut(s) | 1576 |
| EcoT38I | GRGCYC | 3 cut(s) | 652, 1448, 1694 |
| ErhI | CCWWGG | 1 cut(s) | 1576 |
| Esp3I | CGTCTC | 1 cut(s) | 990 |
| FaeI | CATG | 8 cut(s) | 85, 635, 815, 899, 1057, 1440, 1706, 1889 |
| FaqI | GGGAC | 2 cut(s) | 204, 733 |
| FatI | CATG | 8 cut(s) | 81, 631, 811, 895, 1053, 1436, 1702, 1885 |
| FauI | CCCGC | 1 cut(s) | 451 |
| FauNDI | CATATG | 1 cut(s) | 1474 |
| FblI | GTMKAC | 1 cut(s) | 1290 |
| FokI | GGATG | 2 cut(s) | 422, 848 |
| FriOI | GRGCYC | 3 cut(s) | 652, 1448, 1694 |
| FspBI | CTAG | 2 cut(s) | 702, 771 |
| GlaI | GCGC | 2 cut(s) | 277, 442 |
| GsaI | CCCAGC | 1 cut(s) | 1636 |
| GsuI | CTGGAG | 2 cut(s) | 471, 993 |
| HaeII | RGCGCY | 1 cut(s) | 279 |
| HaeIII | GGCC | 8 cut(s) | 141, 370, 595, 842, 979, 1136, 1228, 1764 |
| HapII | CCGG | 6 cut(s) | 444, 495, 519, 616, 641, 843 |
| HhaI | GCGC | 2 cut(s) | 278, 443 |
| Hin1II | CATG | 8 cut(s) | 85, 635, 815, 899, 1057, 1440, 1706, 1889 |
| Hin6I | GCGC | 2 cut(s) | 276, 441 |
| HinP1I | GCGC | 2 cut(s) | 276, 441 |
| HincII | GTYRAC | 1 cut(s) | 1837 |
| HindII | GTYRAC | 1 cut(s) | 1837 |
| HinfI | GANTC | 9 cut(s) | 309, 575, 637, 671, 827, 1327, 1346, 1460, 1594 |
| HpaI | GTTAAC | 1 cut(s) | 1837 |
| HpaII | CCGG | 6 cut(s) | 444, 495, 519, 616, 641, 843 |
| HphI | GGTGA | 3 cut(s) | 122, 518, 680 |
| Hpy166II | GTNNAC | 2 cut(s) | 1291, 1837 |
| Hpy188I | TCNGA | 9 cut(s) | 41, 165, 252, 1207, 1813, 1827, 1873, 2002, 2035 |
| Hpy8I | GTNNAC | 2 cut(s) | 1291, 1837 |
| HpyAV | CCTTC | 9 cut(s) | 252, 363, 391, 910, 1118, 1372, 1754, 1847, 1925 |
| HpyCH4III | ACNGT | 6 cut(s) | 15, 320, 1086, 1303, 1317, 1807 |
| HpyCH4IV | ACGT | 1 cut(s) | 1900 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 455, 487, 707, 822, 892, 953, 1142, 1363 |
| HpyF3I | CTNAG | 8 cut(s) | 294, 908, 960, 1176, 1812, 1870, 1941, 2082 |
| HpySE526I | ACGT | 1 cut(s) | 1900 |
| Hsp92II | CATG | 8 cut(s) | 85, 635, 815, 899, 1057, 1440, 1706, 1889 |
| HspAI | GCGC | 2 cut(s) | 276, 441 |
| Kpn2I | TCCGGA | 1 cut(s) | 640 |
| KspAI | GTTAAC | 1 cut(s) | 1837 |
| LmnI | GCTCC | 9 cut(s) | 58, 455, 690, 792, 863, 1543, 1681, 1861, 1906 |
| LweI | GCATC | 7 cut(s) | 114, 230, 697, 718, 826, 894, 1509 |
| MaeI | CTAG | 2 cut(s) | 702, 771 |
| MaeII | ACGT | 1 cut(s) | 1900 |
| MaeIII | GTNAC | 3 cut(s) | 22, 668, 1279 |
| MbiI | CCGCTC | 1 cut(s) | 458 |
| MfeI | CAATTG | 1 cut(s) | 796 |
| MflI | RGATCY | 4 cut(s) | 103, 1155, 1468, 1975 |
| MhlI | GDGCHC | 6 cut(s) | 543, 652, 1184, 1448, 1678, 1694 |
| MlyI | GAGTC | 4 cut(s) | 584, 665, 836, 1355 |
| MmeI | TCCRAC | 3 cut(s) | 306, 414, 1507 |
| MroI | TCCGGA | 1 cut(s) | 640 |
| MseI | TTAA | 2 cut(s) | 1589, 1836 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2072 |
| MspA1I | CMGCKG | 2 cut(s) | 1175, 1603 |
| MspI | CCGG | 6 cut(s) | 444, 495, 519, 616, 641, 843 |
| MspR9I | CCNGG | 7 cut(s) | 445, 487, 592, 616, 737, 1150, 1391 |
| MunI | CAATTG | 1 cut(s) | 796 |
| Mva1269I | GAATGC | 2 cut(s) | 481, 1503 |
| MvaI | CCWGG | 5 cut(s) | 487, 592, 737, 1150, 1391 |
| MvnI | CGCG | 2 cut(s) | 441, 1351 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 455, 487, 707, 822, 892, 953, 1142, 1363 |
| NciI | CCSGG | 2 cut(s) | 445, 616 |
| NdeI | CATATG | 1 cut(s) | 1474 |
| NlaIII | CATG | 8 cut(s) | 85, 635, 815, 899, 1057, 1440, 1706, 1889 |
| NlaIV | GGNNCC | 3 cut(s) | 60, 859, 1088 |
| NmuCI | GTSAC | 2 cut(s) | 22, 668 |
| OliI | CACNNNNGTG | 1 cut(s) | 2072 |
| PagI | TCATGA | 2 cut(s) | 1053, 1885 |
| PasI | CCCWGGG | 1 cut(s) | 736 |
| PceI | AGGCCT | 2 cut(s) | 595, 1764 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1989 |
| PctI | GAATGC | 2 cut(s) | 481, 1503 |
| PfeI | GAWTC | 5 cut(s) | 309, 637, 1327, 1460, 1594 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 320, 366 |
| PfoI | TCCNGGA | 1 cut(s) | 1389 |
| PleI | GAGTC | 4 cut(s) | 583, 665, 835, 1354 |
| PpsI | GAGTC | 4 cut(s) | 583, 665, 835, 1354 |
| PpuMI | RGGWCCY | 1 cut(s) | 1912 |
| PshBI | ATTAAT | 1 cut(s) | 1589 |
| Psp5II | RGGWCCY | 1 cut(s) | 1912 |
| Psp6I | CCWGG | 5 cut(s) | 485, 590, 735, 1148, 1389 |
| PspFI | CCCAGC | 1 cut(s) | 1632 |
| PspGI | CCWGG | 5 cut(s) | 485, 590, 735, 1148, 1389 |
| PspN4I | GGNNCC | 3 cut(s) | 60, 859, 1088 |
| PspPI | GGNCC | 5 cut(s) | 140, 516, 977, 1226, 1912 |
| PspPPI | RGGWCCY | 1 cut(s) | 1912 |
| PstI | CTGCAG | 1 cut(s) | 1602 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1301, 1811 |
| PsuI | RGATCY | 4 cut(s) | 103, 1155, 1468, 1975 |
| PvuII | CAGCTG | 2 cut(s) | 1175, 1603 |
| RsaI | GTAC | 2 cut(s) | 557, 1242 |
| RsaNI | GTAC | 2 cut(s) | 556, 1241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2072 |
| SaqAI | TTAA | 2 cut(s) | 1589, 1836 |
| Sau96I | GGNCC | 5 cut(s) | 140, 516, 977, 1226, 1912 |
| ScaI | AGTACT | 1 cut(s) | 557 |
| SchI | GAGTC | 4 cut(s) | 584, 665, 836, 1355 |
| ScrFI | CCNGG | 7 cut(s) | 445, 487, 592, 616, 737, 1150, 1391 |
| SduI | GDGCHC | 6 cut(s) | 543, 652, 1184, 1448, 1678, 1694 |
| SfaNI | GCATC | 7 cut(s) | 114, 230, 697, 718, 826, 894, 1509 |
| SfcI | CTRYAG | 3 cut(s) | 890, 1598, 1965 |
| SinI | GGWCC | 2 cut(s) | 516, 1912 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2072 |
| SmlI | CTYRAG | 1 cut(s) | 1687 |
| SmoI | CTYRAG | 1 cut(s) | 1687 |
| SseBI | AGGCCT | 2 cut(s) | 595, 1764 |
| SsiI | CCGC | 7 cut(s) | 127, 439, 458, 839, 1046, 1061, 1624 |
| SspMI | CTAG | 2 cut(s) | 702, 771 |
| StuI | AGGCCT | 2 cut(s) | 595, 1764 |
| StyD4I | CCNGG | 7 cut(s) | 443, 485, 590, 614, 735, 1148, 1389 |
| StyI | CCWWGG | 1 cut(s) | 1576 |
| TaaI | ACNGT | 6 cut(s) | 15, 320, 1086, 1303, 1317, 1807 |
| TaiI | ACGT | 1 cut(s) | 1903 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TauI | GCSGC | 2 cut(s) | 842, 1049 |
| TfiI | GAWTC | 5 cut(s) | 309, 637, 1327, 1460, 1594 |
| Tru1I | TTAA | 2 cut(s) | 1589, 1836 |
| Tru9I | TTAA | 2 cut(s) | 1589, 1836 |
| TscAI | CASTG | 1 cut(s) | 837 |
| TseFI | GTSAC | 2 cut(s) | 22, 668 |
| Tsp45I | GTSAC | 2 cut(s) | 22, 668 |
| TspDTI | ATGAA | 7 cut(s) | 33, 198, 595, 1019, 1209, 1491, 1607 |
| TspRI | CASTG | 1 cut(s) | 837 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 320, 366 |
| VpaK11BI | GGWCC | 2 cut(s) | 516, 1912 |
| VspI | ATTAAT | 1 cut(s) | 1589 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 589 |
| XapI | RAATTY | 4 cut(s) | 1006, 1245, 1427, 1945 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 79 |
| XmiI | GTMKAC | 1 cut(s) | 1290 |
| XspI | CTAG | 2 cut(s) | 702, 771 |
| ZrmI | AGTACT | 1 cut(s) | 557 |