AT1G51530

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002653
Physical Location & Seq
Forward (+)
19109854 .. 19112157
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51530.1

Sequence Viewer

Length: 1176 bp
ATGCAACCCGGCGACGCAATTGCGACTATCATTAAAAGGATCCTAACTTTGGAACCAGAGCACGCTTTGAAAATCATTGGCTATATTCTGTTTCAGGACTTTGGACACACTGAATTGATTCGACTTGCTTTTTGCCCTGCATTGCATTACAAGTCTTCCCCAAGAAATGAGTTCTTGGACTTCTCCAGAAACCCTTACCCTTTGTATCCTTCGTTAACTGGGAATACATTAGGATATTACCCTAACTTTCATGACGGTTCGTCGCAACAACAACAATGGAGTAACCATTTTCCAATTCCCAGATTTTGGGTACCCGATTATCAGTTTCCACCAGGCGGTTTAGCTCTTCCTCCTAGTGTTTTTGGTCCTCCCAGTGAGAGAATATCTCCAAATCAGCAACAAAGAATGATTGCTACTCATGGCTCTCCAGTGTCGAACATACAAGGATCAGGACAATTTGGAATAGAAGGTGGTTTTGGGTCGCCGAGTGAGCAACAACGAATGATTGCTCCTCAGTTCATGGGGGATTTTGGCTCTCGAATGTCGAACATCAATTTTGGACCTGTGCTAAGCGTAAGGATTCCAAATCAGAAGGAACAGGTGTATGGGTTTGTCTCTTTCGCTAATGCTGAAACCGTGACAACCATATTGGATCAAGAAAATCCTCATCTCATCGGTGAATCACCTGTGAACGTGACAGCGGCAGCAACTACAGCAGGTGTTGGTTGGAGAGAACCTTTTTCTGTCGGGAATGGACCCAAAGGAGCGATGTCGCGACCAAGGAGGTTTCGAAACGAGACACATGAGATGCTGCAAAGAAACACCGAGCAAGCTGATCCACAACAAGCCATAGAAGTAGAAGACCAAATAAGAAGGTTATCGAATCTGCAATTGCCTGGCATGGAGAATAAATCTATTCACCATCATCAGCCTAGTCCTTCTATTGGTTCTCACGCTCATTTCCCATCTCAAGTCAGGGAAGGCGGTAGTGGTACAGGTGAGAAAGATCTTGAACAAGTAGAAACCAGCAACGAAGAACATCAAGGGCAAGAGAAGAGTCTGGAGAATACTCTTCCTGATAGTTCGTTTGGTTCCACAAAAGAATCCGGCGAAACCCGTCAAACCGAGTCTGATATAGAGGAGACTAAGAAGGCCTCACTAGATCAATCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

391

Amino Acids

43.29

Weight (kDa)

5.54

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 46 9.8e-15 AtC3H46 PABC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 707
Acc36I ACCTGC 1 cut(s) 707
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 306
AccII CGCG 1 cut(s) 775
AciI CCGC 3 cut(s) 336, 701, 984
AclWI GGATC 5 cut(s) 34, 47, 454, 660, 830
AfaI GTAC 2 cut(s) 312, 994
AfiI CCNNNNNNNGG 4 cut(s) 49, 306, 335, 944
AgsI TTSAA 2 cut(s) 70, 1013
AhdI GACNNNNNGTC 1 cut(s) 259
AjnI CCWGG 2 cut(s) 331, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AluBI AGCT 2 cut(s) 344, 833
AluI AGCT 2 cut(s) 344, 833
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 3 cut(s) 619, 791, 1136
AlwI GGATC 5 cut(s) 34, 47, 454, 660, 830
AoxI GGCC 1 cut(s) 1152
ApeKI GCWGC 2 cut(s) 704, 811
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 365, 560, 755
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 4 cut(s) 675, 689, 911, 1010
AsuII TTCGAA 1 cut(s) 790
AvaII GGWCC 3 cut(s) 365, 560, 755
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 147, 867
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 716, 798
BccI CCATC 2 cut(s) 930, 973
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 333, 897
BciVI GTATCC 1 cut(s) 216
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 619, 791, 1136
BfaI CTAG 4 cut(s) 354, 933, 1160, 1174
BfmI CTRYAG 1 cut(s) 711
BfuAI ACCTGC 1 cut(s) 707
BfuI GTATCC 1 cut(s) 216
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 3 cut(s) 702, 705, 812
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 3 cut(s) 703, 706, 813
Bme1390I CCNGG 3 cut(s) 9, 333, 897
Bme18I GGWCC 3 cut(s) 365, 560, 755
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 365, 560, 755
BmiI GGNNCC 5 cut(s) 41, 54, 312, 757, 1093
BmrFI CCNGG 3 cut(s) 9, 333, 897
BmrI ACTGGG 2 cut(s) 228, 366
BmsI GCATC 1 cut(s) 798
BmuI ACTGGG 2 cut(s) 228, 366
BpiI GAAGAC 2 cut(s) 147, 867
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BpmI CTGGAG 3 cut(s) 169, 411, 1082
Bpu1102I GCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 790
BpuEI CTTGAG 1 cut(s) 954
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 779
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 306, 335, 944
Bse1I ACTGG 3 cut(s) 223, 372, 428
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 333, 897
BseDI CCNNGG 1 cut(s) 779
BseLI CCNNNNNNNGG 4 cut(s) 49, 306, 335, 944
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 223, 372, 428
BseRI GAGGAG 2 cut(s) 501, 1154
BseXI GCAGC 2 cut(s) 716, 798
Bsh1236I CGCG 1 cut(s) 775
BshFI GGCC 1 cut(s) 1154
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 9, 1107
BslI CCNNNNNNNGG 4 cut(s) 49, 306, 335, 944
BsmAI GTCTC 3 cut(s) 619, 791, 1136
BsnI GGCC 1 cut(s) 1154
Bsp119I TTCGAA 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
Bsp1720I GCTNAGC 1 cut(s) 569
Bsp68I TCGCGA 1 cut(s) 775
BspACI CCGC 3 cut(s) 336, 701, 984
BspANI GGCC 1 cut(s) 1154
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 775
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 5 cut(s) 41, 54, 312, 757, 1093
BspMI ACCTGC 1 cut(s) 707
BspPI GGATC 5 cut(s) 34, 47, 454, 660, 830
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 790
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 3 cut(s) 223, 372, 428
BssECI CCNNGG 1 cut(s) 779
BssMI GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
BssT1I CCWWGG 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 333, 897
Bst4CI ACNGT 2 cut(s) 257, 637
Bst6I CTCTTC 3 cut(s) 351, 1049, 1077
BstBI TTCGAA 1 cut(s) 790
BstC8I GCNNGC 2 cut(s) 63, 831
BstDEI CTNAG 3 cut(s) 513, 569, 1146
BstFNI CGCG 1 cut(s) 775
BstKTI GATC 6 cut(s) 42, 449, 655, 838, 1009, 1165
BstMAI GTCTC 3 cut(s) 619, 791, 1136
BstMBI GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 490, 713
BstNI CCWGG 2 cut(s) 333, 897
BstSCI CCNGG 3 cut(s) 7, 331, 895
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 1 cut(s) 775
BstV1I GCAGC 2 cut(s) 716, 798
BstV2I GAAGAC 2 cut(s) 147, 867
BstX2I RGATCY 2 cut(s) 39, 1006
BstYI RGATCY 2 cut(s) 39, 1006
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 1154
BtgZI GCGATG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 108, 379, 435
BtuMI TCGCGA 1 cut(s) 775
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 2 cut(s) 63, 831
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 365, 560, 755
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 311, 993
CviAII CATG 5 cut(s) 251, 419, 520, 803, 901
CviJI RGCY 9 cut(s) 81, 344, 423, 534, 833, 848, 931, 1154, 1172
CviKI_1 RGCY 9 cut(s) 81, 344, 423, 534, 833, 848, 931, 1154, 1172
CviQI GTAC 2 cut(s) 311, 993
DdeI CTNAG 3 cut(s) 513, 569, 1146
DpnI GATC 6 cut(s) 41, 448, 654, 837, 1008, 1164
DpnII GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
DriI GACNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 3 cut(s) 351, 1049, 1077
Eam1105I GACNNNNNGTC 1 cut(s) 259
EarI CTCTTC 3 cut(s) 351, 1049, 1077
Eco130I CCWWGG 1 cut(s) 779
Eco147I AGGCCT 1 cut(s) 1154
Eco47I GGWCC 3 cut(s) 365, 560, 755
EcoRII CCWGG 2 cut(s) 331, 895
EcoT14I CCWWGG 1 cut(s) 779
ErhI CCWWGG 1 cut(s) 779
FaeI CATG 5 cut(s) 254, 422, 523, 806, 904
FatI CATG 5 cut(s) 250, 418, 519, 802, 900
Fnu4HI GCNGC 3 cut(s) 702, 705, 812
Fsp4HI GCNGC 3 cut(s) 702, 705, 812
FspBI CTAG 4 cut(s) 354, 933, 1160, 1174
GluI GCNGC 3 cut(s) 702, 705, 812
GsuI CTGGAG 3 cut(s) 169, 411, 1082
HaeIII GGCC 1 cut(s) 1154
HapII CCGG 2 cut(s) 9, 1107
HgaI GACGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 254, 422, 523, 806, 904
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 7 cut(s) 118, 580, 680, 883, 1057, 1103, 1127
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 2 cut(s) 9, 1107
HphI GGTGA 4 cut(s) 675, 689, 911, 1010
Hpy166II GTNNAC 2 cut(s) 216, 691
Hpy188I TCNGA 2 cut(s) 591, 1132
Hpy8I GTNNAC 2 cut(s) 216, 691
Hpy99I CGWCG 2 cut(s) 17, 265
HpyAV CCTTC 7 cut(s) 219, 461, 586, 867, 948, 974, 1144
HpyCH4III ACNGT 2 cut(s) 257, 637
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 5 cut(s) 4, 140, 145, 814, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 490, 713
HpyF3I CTNAG 3 cut(s) 513, 569, 1146
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 5 cut(s) 254, 422, 523, 806, 904
KpnI GGTACC 1 cut(s) 314
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 514, 764
Lsp1109I GCAGC 2 cut(s) 716, 798
LweI GCATC 1 cut(s) 798
MaeI CTAG 4 cut(s) 354, 933, 1160, 1174
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 3 cut(s) 281, 637, 694
MalI GATC 6 cut(s) 41, 448, 654, 837, 1008, 1164
MboI GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
MboII GAAGA 6 cut(s) 147, 338, 872, 1046, 1064, 1066
MfeI CAATTG 2 cut(s) 18, 890
MflI RGATCY 2 cut(s) 39, 1006
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 6 cut(s) 18, 113, 294, 455, 553, 890
MlyI GAGTC 2 cut(s) 1066, 1136
MmeI TCCRAC 1 cut(s) 707
MnlI CCTC 7 cut(s) 360, 378, 522, 675, 777, 1132, 1165
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 33, 215
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 2 cut(s) 9, 1107
MspR9I CCNGG 3 cut(s) 9, 333, 897
MunI CAATTG 2 cut(s) 18, 890
MvaI CCWGG 2 cut(s) 333, 897
MvnI CGCG 1 cut(s) 775
MwoI GCNNNNNNNGC 2 cut(s) 490, 713
NciI CCSGG 1 cut(s) 9
NdeII GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
NlaIII CATG 5 cut(s) 254, 422, 523, 806, 904
NlaIV GGNNCC 5 cut(s) 41, 54, 312, 757, 1093
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 637, 694
NruI TCGCGA 1 cut(s) 775
NspV TTCGAA 1 cut(s) 790
PagI TCATGA 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 707
PceI AGGCCT 1 cut(s) 1154
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 118, 580, 680, 883, 1103
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 3 cut(s) 703, 706, 813
PleI GAGTC 2 cut(s) 1065, 1135
PpsI GAGTC 2 cut(s) 1065, 1135
Psp6I CCWGG 2 cut(s) 331, 895
PspGI CCWGG 2 cut(s) 331, 895
PspN4I GGNNCC 5 cut(s) 41, 54, 312, 757, 1093
PspPI GGNCC 3 cut(s) 365, 560, 755
PsuI RGATCY 2 cut(s) 39, 1006
RruI TCGCGA 1 cut(s) 775
RsaI GTAC 2 cut(s) 312, 994
RsaNI GTAC 2 cut(s) 311, 993
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 33, 215
SatI GCNGC 3 cut(s) 702, 705, 812
Sau3AI GATC 6 cut(s) 39, 446, 652, 835, 1006, 1162
Sau96I GGNCC 3 cut(s) 365, 560, 755
SchI GAGTC 2 cut(s) 1066, 1136
ScrFI CCNGG 3 cut(s) 9, 333, 897
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 798
SfcI CTRYAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 790
SinI GGWCC 3 cut(s) 365, 560, 755
SmlI CTYRAG 1 cut(s) 969
SmoI CTYRAG 1 cut(s) 969
Sse9I AATT 6 cut(s) 18, 113, 294, 455, 553, 890
SseBI AGGCCT 1 cut(s) 1154
SsiI CCGC 3 cut(s) 336, 701, 984
SspMI CTAG 4 cut(s) 354, 933, 1160, 1174
StuI AGGCCT 1 cut(s) 1154
StyD4I CCNGG 3 cut(s) 7, 331, 895
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 2 cut(s) 257, 637
TaiI ACGT 1 cut(s) 696
TaqI TCGA 6 cut(s) 121, 434, 538, 545, 790, 881
TasI AATT 6 cut(s) 18, 113, 294, 455, 553, 890
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 5 cut(s) 118, 580, 680, 883, 1103
Tru1I TTAA 2 cut(s) 33, 215
Tru9I TTAA 2 cut(s) 33, 215
TscAI CASTG 3 cut(s) 115, 379, 435
TseFI GTSAC 2 cut(s) 637, 694
TseI GCWGC 2 cut(s) 704, 811
Tsp45I GTSAC 2 cut(s) 637, 694
TspDTI ATGAA 2 cut(s) 239, 508
TspRI CASTG 3 cut(s) 115, 379, 435
Van91I CCANNNNNTGG 1 cut(s) 306
VpaK11BI GGWCC 3 cut(s) 365, 560, 755
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 354, 933, 1160, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.