Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002653

Physical Location & Seq

Genomic Coordinates Reverse (-)

23347905 .. 23352355

Gene Structure 4451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1171700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGGTTCCTATGAACTTACAAATGTACTCTTTTCGAAGATCAAAACCTTAGACCCAGAAAATGCCATCAAAATCATGGGTTATCTTCTCATTCAAGATCTTGCCGAGAAGGATTTGATTCGTTTGGCGTATGGTCCCGAGAGCCTTTTGCACTCACTGATTGTGAGGGCTAAAATCCAGTTGGGACTTTCGTCAAACACTTCGTCCGTATCGTCCACTCCTTCCTCTCCTTCACCGCTAAATCCCATAGCCAGACCAACCAACGCCAACCCGTTTTCCCAGTCCTCTCCTAGAATCCCAAACGGCTTTGACTTTGGGAACAACTCTTCTTCTCCCTCTTCGAATCCCTGGCCGCTTTCTGGCTTCCCAAACAACTCCATTAGCCCAAAGGCAAGCCCTTTACTCTCTCATGACAATATCCGGGCCGGGTCCTTCTCCGTTCCAGTACATTCGCACCAGTTCTGTAAGGATGGTGGTGGTGGGGGCGGTGGTGATGGGTGGCCAGGAAGTGACCTCATTGACGAGCATCAACTCAGCGAGTACCTCTCCTTTCTCAACGAGTCTTCTTCCTCTTCGAGGCCGGGCGATTCCATTGATCCCAGGCTCGAATTGGGTCCCGGGGTTCCTGATTGGGTTCATTCGGTTAACAATGGCGACACCCATTTCCACAAAAGGAGCTATTCGGCCAGCGATGCTTGTCTCGGGTCCGAGGACCCTGCTTTGGGAGTTGGGTTCAAGCCGTGTCTTTACTTTGCTAGAGGGTTTTGCAAGAATGGAAGCAATTGCAAGTTTGTGCATTGCGGTTTTGCTGATTCCCTGGACGCTCCTGGTGCTATTGTGGGGTCTCTCAGTAATCTCGATGGTTTCGAACAGCAGGAGGAGATGTTGCGGTTGAAAGCCCAGCAACAGAGATTGGCTGCTGCCTCTCAGTTCATGGCTGGAGCGTCGCCTTCTTCGTACAACAAGTACATGAATTTCCTATTGCAACAGCAGAATGACCCTCAGAGAGTTGCGGCCATGATGATGGGGGAAGAACTTTTCAAGTTTGGGCGGTGTCGACCTGATAGAAACGAACTTTTGGCAATGGCTTCTGTTGAAAAGGCGAACTCAGCTTCAAGACAGATCTACTTGACATTCCCAGCTGAGAGCACTTTTAGAGATGAAGATGTTTCAGAATACTTCAGCAAGTTCGGGCCAGTTCAAGATGTTAGGATCCCATATCAGCAGAAGCGAATGTTTGGGTTCGTAACATTTGTCTTCCCAGAAACTGTCAGGCTTATATTGTCCAAAGGCAATCCTCATTTTATATGTGATTCACGTGTGCTCGTCAAGCCCTACAAGGAGAAGGGAAAAATCCTGGATAAGAGGCAACAACAACAACAGCATTTGGAGAGGGGAGAATTTTCATCATGTCTGAGCCCTGGTGGTCTTGATTCTAGAGATGCATATGATCTCCCACTTGGGGGAAGAATGTTCTACAATACACAGGAGGTGTTATTGAGAAGAAAGTTGGAGGAGCAGGCTGAACTGCAGCAAGCAATTGAACTCCAAGGCAGAAGACTTATGAGTCTGCAGCTCCCAGACTGGAAGAATGAACGCTTAACCCATCATCACCGCAGTCTATCTGTTGGTGCTCATGGTCCTCCGTTGAGCCCTCATTCCCATGCTCAGATCAATCAAAATATCCTTCCATTTGACAGCATGGAACAAGAAGTTGCAGAAGGCCACAGTGACATTCCAGCTGCCTCAATGTCTGTGACTCGTGCAATTGCTGAGCAGCAGTCCCAGAAGGAAGATAATTTAGCTTTCATTCACAACAATGGCAATAGGAATGGCAAAGAAAAGGAGCAAGACTCCAACCTGGATGCTCCTAATCTTCATAAAAGTGCAGAGCAGGTCCTGCCCGATAGCCTCTTTACTTCTCCTACAAAATCTGCCGGAGATCATCATCTATCTGAGTTGTCAACCACTGTGCTCGAAGTTAATGATACTGCCATTGCTACTGAAAACAACACATTATCATCAGTCAATTCTGCTGGCTTCATTGCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

686

Amino Acids

75.28

Weight (kDa)

5.92

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PABC_AtC3H46	PF23182	1 - 66	1.7e-29	AtC3H46 PABC domain
RRM_1	PF00076	386 - 430	4.6e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51520 AT1G51520 AT1G51530 AT1G51530 AT3G21100 AT3G21100 AT3G21100 AT3G21100 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440
fragaria_vesca	FvH4_3g28410 FvH4_3g28410 FvH4_3g28410
malus_domestica	MD00G1177200.v1.1 MD03G1171700.v1.1 MD11G1189200.v1.1
prunus_persica	Prupe.4G255200_v2.0.a1
pyrus_communis	pycom03g12880 pycom11g16560
rosa_chinensis	RchiOBHm_Chr5g0053291
rosa_laevigata	RLG00000034771
rosa_multiflora	Rmu_sc0001966.1_g000018
rosa_roxburghii	Rroxscaffold_1G00029030
rosa_rugosa	Rorug05G0267800 Rorug05G0267900
rosa_samantha	Rh5AG340200 Rh5BG350900 Rh5CG377100 Rh5DG364800
rosa_wichuraiana	Rw5G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1566
Acc36I	ACCTGC	1 cut(s)	1885
AccI	GTMKAC	1 cut(s)	1057
AciI	CCGC	8 cut(s)	236, 353, 486, 801, 889, 1013, 1051, 1615
AclWI	GGATC	3 cut(s)	590, 1207, 1220
AcoI	YGGCCR	4 cut(s)	350, 500, 684, 1014
AcsI	RAATTY	2 cut(s)	973, 1400
AcuI	CTGAAG	1 cut(s)	1165
AcvI	CACGTG	1 cut(s)	1319
AfaI	GTAC	5 cut(s)	27, 447, 542, 959, 968
AfiI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1462, 1463
AflIII	ACRYGT	1 cut(s)	1318
AgsI	TTSAA	8 cut(s)	95, 736, 895, 1042, 1097, 1116, 1202, 1544
AjnI	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1356, 1420, 1860
AluBI	AGCT	6 cut(s)	678, 1112, 1142, 1576, 1742, 1805
AluI	AGCT	6 cut(s)	678, 1112, 1142, 1576, 1742, 1805
Alw21I	GWGCWC	4 cut(s)	1151, 1326, 1636, 1977
Alw26I	GTCTC	2 cut(s)	704, 849
AlwI	GGATC	3 cut(s)	590, 1207, 1220
AlwNI	CAGNNNCTG	2 cut(s)	1268, 1900
Ama87I	CYCGRG	3 cut(s)	137, 617, 701
AoxI	GGCC	8 cut(s)	350, 423, 500, 578, 684, 1014, 1193, 1723
ApeKI	GCWGC	6 cut(s)	917, 920, 1531, 1573, 1742, 1777
ApoI	RAATTY	2 cut(s)	973, 1400
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1193, 1640, 1897
AsuC2I	CCSGG	5 cut(s)	422, 427, 582, 618, 619
AsuHPI	GGTGA	3 cut(s)	225, 503, 1604
AsuII	TTCGAA	3 cut(s)	35, 341, 867
AvaI	CYCGRG	3 cut(s)	137, 617, 701
AvaII	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1640, 1897
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	1212
BanII	GRGCYC	2 cut(s)	1421, 1655
BauI	CACGAG	1 cut(s)	1761
BbrPI	CACGTG	1 cut(s)	1319
BbsI	GAAGAC	3 cut(s)	555, 1249, 1564
Bbv12I	GWGCWC	4 cut(s)	1151, 1326, 1636, 1977
BbvI	GCAGC	6 cut(s)	904, 907, 1543, 1585, 1729, 1789
BccI	CCATC	6 cut(s)	74, 464, 488, 854, 1018, 1614
BceAI	ACGGC	2 cut(s)	319, 724
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1358, 1422, 1862
BcnI	CCSGG	5 cut(s)	422, 427, 582, 618, 619
BcoDI	GTCTC	2 cut(s)	704, 849
BfaI	CTAG	3 cut(s)	291, 756, 1437
BfmI	CTRYAG	2 cut(s)	1529, 1571
BfuAI	ACCTGC	1 cut(s)	1885
BglII	AGATCT	2 cut(s)	97, 1122
BisI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1532, 1574, 1743, 1778
BlpI	GCTNAGC	1 cut(s)	1773
BlsI	GCNGC	8 cut(s)	354, 919, 922, 1015, 1533, 1575, 1744, 1779
Bme18I	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1640, 1897
BmeT110I	CYCGRG	3 cut(s)	137, 617, 701
BmgT120I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1193, 1640, 1897
BmiI	GGNNCC	9 cut(s)	7, 136, 430, 615, 616, 624, 706, 714, 1214
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	4 cut(s)	535, 682, 1432, 1855
BmuI	ACTGGG	1 cut(s)	274
BoxI	GACNNNNGTC	1 cut(s)	190
BpiI	GAAGAC	3 cut(s)	555, 1249, 1564
BplI	GAGNNNNNCTC	4 cut(s)	530, 562, 1838, 1870
BpmI	CTGGAG	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	1773
Bpu14I	TTCGAA	3 cut(s)	35, 341, 867
BpuMI	CCSGG	5 cut(s)	422, 427, 582, 618, 619
BsaAI	YACGTR	1 cut(s)	1319
BsaBI	GATNNNNATC	1 cut(s)	1947
BsaI	GGTCTC	1 cut(s)	849
BsaJI	CCNNGG	8 cut(s)	347, 599, 617, 618, 708, 816, 1420, 1549
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1462, 1463
Bse1I	ACTGG	6 cut(s)	178, 280, 443, 457, 1196, 1589
Bse3DI	GCAATG	4 cut(s)	796, 1089, 1995, 2043
Bse8I	GATNNNNATC	1 cut(s)	1947
BseBI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1358, 1422, 1862
BseDI	CCNNGG	8 cut(s)	347, 599, 617, 618, 708, 816, 1420, 1549
BseGI	GGATG	2 cut(s)	475, 1870
BseJI	GATNNNNATC	1 cut(s)	1947
BseLI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1462, 1463
BseMI	GCAATG	4 cut(s)	796, 1089, 1995, 2043
BseNI	ACTGG	6 cut(s)	178, 280, 443, 457, 1196, 1589
BseRI	GAGGAG	2 cut(s)	893, 1529
BseXI	GCAGC	6 cut(s)	904, 907, 1543, 1585, 1729, 1789
BseYI	CCCAGC	2 cut(s)	900, 1138
BsgI	GTGCAG	1 cut(s)	1908
BshFI	GGCC	8 cut(s)	352, 425, 502, 580, 686, 1016, 1195, 1725
BsiHKAI	GWGCWC	4 cut(s)	1151, 1326, 1636, 1977
BsiHKCI	CYCGRG	3 cut(s)	137, 617, 701
BsiSI	CCGG	5 cut(s)	421, 426, 581, 618, 1938
BslFI	GGGAC	4 cut(s)	120, 198, 600, 1768
BslI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1462, 1463
BsmAI	GTCTC	2 cut(s)	704, 849
BsmFI	GGGAC	4 cut(s)	120, 198, 600, 1768
BsnI	GGCC	8 cut(s)	352, 425, 502, 580, 686, 1016, 1195, 1725
Bso31I	GGTCTC	1 cut(s)	849
BsoBI	CYCGRG	3 cut(s)	137, 617, 701
Bsp119I	TTCGAA	3 cut(s)	35, 341, 867
Bsp1286I	GDGCHC	6 cut(s)	1151, 1326, 1421, 1636, 1655, 1977
Bsp143I	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
Bsp1720I	GCTNAGC	1 cut(s)	1773
BspACI	CCGC	8 cut(s)	236, 353, 486, 801, 889, 1013, 1051, 1615
BspANI	GGCC	8 cut(s)	352, 425, 502, 580, 686, 1016, 1195, 1725
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	9 cut(s)	7, 136, 430, 615, 616, 624, 706, 714, 1214
BspMAI	CTGCAG	2 cut(s)	1533, 1575
BspMI	ACCTGC	1 cut(s)	1885
BspPI	GGATC	3 cut(s)	590, 1207, 1220
BspT104I	TTCGAA	3 cut(s)	35, 341, 867
BspTNI	GGTCTC	1 cut(s)	849
BsrDI	GCAATG	4 cut(s)	796, 1089, 1995, 2043
BsrI	ACTGG	6 cut(s)	178, 280, 443, 457, 1196, 1589
BssECI	CCNNGG	8 cut(s)	347, 599, 617, 618, 708, 816, 1420, 1549
BssMI	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
BssSI	CACGAG	1 cut(s)	1761
BssT1I	CCWWGG	1 cut(s)	1549
Bst2BI	CACGAG	1 cut(s)	1761
Bst2UI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1358, 1422, 1862
Bst4CI	ACNGT	3 cut(s)	1270, 1730, 1972
Bst6I	CTCTTC	3 cut(s)	331, 343, 577
BstAPI	GCANNNNNTGC	1 cut(s)	1900
BstBAI	YACGTR	1 cut(s)	1319
BstBI	TTCGAA	3 cut(s)	35, 341, 867
BstC8I	GCNNGC	5 cut(s)	394, 688, 1521, 1536, 2038
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	475, 1870
BstKTI	GATC	8 cut(s)	42, 100, 598, 1125, 1215, 1453, 1674, 1945
BstMAI	GTCTC	2 cut(s)	704, 849
BstMBI	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
BstMWI	GCNNNNNNNGC	5 cut(s)	692, 830, 1109, 1330, 1900
BstNI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1358, 1422, 1862
BstPAI	GACNNNNGTC	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	1529, 1571
BstV1I	GCAGC	6 cut(s)	904, 907, 1543, 1585, 1729, 1789
BstV2I	GAAGAC	3 cut(s)	555, 1249, 1564
BstX2I	RGATCY	3 cut(s)	97, 1122, 1212
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	3 cut(s)	97, 1122, 1212
BsuRI	GGCC	8 cut(s)	352, 425, 502, 580, 686, 1016, 1195, 1725
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	475, 1870
BtsIMutI	CAGTG	3 cut(s)	155, 1735, 1968
BveI	ACCTGC	1 cut(s)	1885
Cac8I	GCNNGC	5 cut(s)	394, 688, 1521, 1536, 2038
CaiI	CAGNNNCTG	2 cut(s)	1268, 1900
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1193, 1640, 1897
Cfr9I	CCCGGG	1 cut(s)	617
CseI	GACGC	2 cut(s)	830, 933
Csp6I	GTAC	5 cut(s)	26, 446, 541, 958, 967
CviAII	CATG	9 cut(s)	76, 410, 934, 970, 1018, 1410, 1637, 1664, 1702
CviQI	GTAC	5 cut(s)	26, 446, 541, 958, 967
DpnI	GATC	8 cut(s)	41, 99, 597, 1124, 1214, 1452, 1673, 1944
DpnII	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
DrdI	GACNNNNNNGTC	1 cut(s)	1566
DseDI	GACNNNNNNGTC	1 cut(s)	1566
EaeI	YGGCCR	4 cut(s)	350, 500, 684, 1014
Eam1104I	CTCTTC	3 cut(s)	331, 343, 577
EarI	CTCTTC	3 cut(s)	331, 343, 577
Eco130I	CCWWGG	1 cut(s)	1549
Eco24I	GRGCYC	2 cut(s)	1421, 1655
Eco31I	GGTCTC	1 cut(s)	849
Eco47I	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1640, 1897
Eco57I	CTGAAG	1 cut(s)	1165
Eco72I	CACGTG	1 cut(s)	1319
Eco88I	CYCGRG	3 cut(s)	137, 617, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoO109I	RGGNCCY	4 cut(s)	429, 614, 712, 1897
EcoRII	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1356, 1420, 1860
EcoT14I	CCWWGG	1 cut(s)	1549
EcoT22I	ATGCAT	1 cut(s)	1447
EcoT38I	GRGCYC	2 cut(s)	1421, 1655
ErhI	CCWWGG	1 cut(s)	1549
FaeI	CATG	9 cut(s)	79, 413, 937, 973, 1021, 1413, 1640, 1667, 1705
FaqI	GGGAC	4 cut(s)	120, 198, 600, 1768
FatI	CATG	9 cut(s)	75, 409, 933, 969, 1017, 1409, 1636, 1663, 1701
FauNDI	CATATG	1 cut(s)	1447
FblI	GTMKAC	1 cut(s)	1057
Fnu4HI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1532, 1574, 1743, 1778
FokI	GGATG	2 cut(s)	482, 1877
FriOI	GRGCYC	2 cut(s)	1421, 1655
Fsp4HI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1532, 1574, 1743, 1778
FspBI	CTAG	3 cut(s)	291, 756, 1437
GluI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1532, 1574, 1743, 1778
GsaI	CCCAGC	2 cut(s)	904, 1142
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	8 cut(s)	352, 425, 502, 580, 686, 1016, 1195, 1725
HapII	CCGG	5 cut(s)	421, 426, 581, 618, 1938
HgaI	GACGC	2 cut(s)	830, 933
Hin1II	CATG	9 cut(s)	79, 413, 937, 973, 1021, 1413, 1640, 1667, 1705
HincII	GTYRAC	3 cut(s)	646, 1058, 1965
HindII	GTYRAC	3 cut(s)	646, 1058, 1965
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	5 cut(s)	421, 426, 581, 618, 1938
HphI	GGTGA	3 cut(s)	225, 503, 1604
Hpy166II	GTNNAC	4 cut(s)	216, 646, 1058, 1965
Hpy188I	TCNGA	6 cut(s)	709, 1005, 1174, 1416, 1671, 1957
Hpy188III	TCNNGA	9 cut(s)	95, 137, 410, 626, 857, 1116, 1202, 1430, 1437
Hpy8I	GTNNAC	4 cut(s)	216, 646, 1058, 1965
Hpy99I	CGWCG	1 cut(s)	949
HpyAV	CCTTC	9 cut(s)	103, 231, 240, 442, 960, 1339, 1697, 1715, 1783
HpyCH4III	ACNGT	3 cut(s)	1270, 1730, 1972
HpyCH4IV	ACGT	1 cut(s)	1318
HpyF10VI	GCNNNNNNNGC	5 cut(s)	692, 830, 1109, 1330, 1900
HpySE526I	ACGT	1 cut(s)	1318
Hsp92II	CATG	9 cut(s)	79, 413, 937, 973, 1021, 1413, 1640, 1667, 1705
KflI	GGGWCCC	1 cut(s)	614
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
LmnI	GCTCC	7 cut(s)	675, 829, 941, 1516, 1581, 1846, 1873
Lsp1109I	GCAGC	6 cut(s)	904, 907, 1543, 1585, 1729, 1789
LweI	GCATC	4 cut(s)	535, 682, 1432, 1855
MaeI	CTAG	3 cut(s)	291, 756, 1437
MaeII	ACGT	1 cut(s)	1318
MaeIII	GTNAC	4 cut(s)	509, 1246, 1730, 1756
MalI	GATC	8 cut(s)	41, 99, 597, 1124, 1214, 1452, 1673, 1944
MboI	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
MfeI	CAATTG	3 cut(s)	781, 1539, 1767
MflI	RGATCY	3 cut(s)	97, 1122, 1212
MhlI	GDGCHC	6 cut(s)	1151, 1326, 1421, 1636, 1655, 1977
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	8 cut(s)	608, 781, 973, 1400, 1539, 1767, 1798, 2029
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	4 cut(s)	569, 1576, 1753, 1847
MmeI	TCCRAC	2 cut(s)	1491, 1881
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	1447
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	3 cut(s)	645, 1601, 1983
MslI	CAYNNNNRTG	4 cut(s)	1022, 1662, 1818, 1884
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	2 cut(s)	1142, 1742
MspI	CCGG	5 cut(s)	421, 426, 581, 618, 1938
MunI	CAATTG	3 cut(s)	781, 1539, 1767
MvaI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1358, 1422, 1862
MwoI	GCNNNNNNNGC	5 cut(s)	692, 830, 1109, 1330, 1900
NciI	CCSGG	5 cut(s)	422, 427, 582, 618, 619
NdeI	CATATG	1 cut(s)	1447
NdeII	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
NlaIII	CATG	9 cut(s)	79, 413, 937, 973, 1021, 1413, 1640, 1667, 1705
NlaIV	GGNNCC	9 cut(s)	7, 136, 430, 615, 616, 624, 706, 714, 1214
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	3 cut(s)	509, 1730, 1756
NsiI	ATGCAT	1 cut(s)	1447
NspV	TTCGAA	3 cut(s)	35, 341, 867
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	3 cut(s)	209, 864, 953
PfeI	GAWTC	7 cut(s)	118, 294, 343, 587, 812, 1313, 1433
PfoI	TCCNGGA	1 cut(s)	1356
PkrI	GCNGC	8 cut(s)	354, 919, 922, 1015, 1533, 1575, 1744, 1779
PleI	GAGTC	4 cut(s)	568, 1575, 1753, 1847
PmaCI	CACGTG	1 cut(s)	1319
PmlI	CACGTG	1 cut(s)	1319
PpsI	GAGTC	4 cut(s)	568, 1575, 1753, 1847
Ppu21I	YACGTR	1 cut(s)	1319
PpuMI	RGGWCCY	4 cut(s)	429, 614, 712, 1897
PshAI	GACNNNNGTC	1 cut(s)	190
Psp5II	RGGWCCY	4 cut(s)	429, 614, 712, 1897
Psp6I	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1356, 1420, 1860
PspCI	CACGTG	1 cut(s)	1319
PspFI	CCCAGC	2 cut(s)	900, 1138
PspGI	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1356, 1420, 1860
PspN4I	GGNNCC	9 cut(s)	7, 136, 430, 615, 616, 624, 706, 714, 1214
PspPI	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1193, 1640, 1897
PspPPI	RGGWCCY	4 cut(s)	429, 614, 712, 1897
PstI	CTGCAG	2 cut(s)	1533, 1575
PstNI	CAGNNNCTG	2 cut(s)	1268, 1900
PsuI	RGATCY	3 cut(s)	97, 1122, 1212
PvuII	CAGCTG	2 cut(s)	1142, 1742
RsaI	GTAC	5 cut(s)	27, 447, 542, 959, 968
RsaNI	GTAC	5 cut(s)	26, 446, 541, 958, 967
RseI	CAYNNNNRTG	4 cut(s)	1022, 1662, 1818, 1884
SalI	GTCGAC	1 cut(s)	1056
SaqAI	TTAA	3 cut(s)	645, 1601, 1983
SatI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1532, 1574, 1743, 1778
Sau3AI	GATC	8 cut(s)	39, 97, 595, 1122, 1212, 1450, 1671, 1942
Sau96I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1193, 1640, 1897
SchI	GAGTC	4 cut(s)	569, 1576, 1753, 1847
SduI	GDGCHC	6 cut(s)	1151, 1326, 1421, 1636, 1655, 1977
SfaNI	GCATC	4 cut(s)	535, 682, 1432, 1855
SfcI	CTRYAG	2 cut(s)	1529, 1571
SfuI	TTCGAA	3 cut(s)	35, 341, 867
SinI	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1640, 1897
SmaI	CCCGGG	1 cut(s)	619
SmiMI	CAYNNNNRTG	4 cut(s)	1022, 1662, 1818, 1884
Sse9I	AATT	8 cut(s)	608, 781, 973, 1400, 1539, 1767, 1798, 2029
SsiI	CCGC	8 cut(s)	236, 353, 486, 801, 889, 1013, 1051, 1615
SspMI	CTAG	3 cut(s)	291, 756, 1437
StyI	CCWWGG	1 cut(s)	1549
TaaI	ACNGT	3 cut(s)	1270, 1730, 1972
TaiI	ACGT	1 cut(s)	1321
TaqI	TCGA	8 cut(s)	35, 341, 575, 606, 858, 867, 1057, 1977
TasI	AATT	8 cut(s)	608, 781, 973, 1400, 1539, 1767, 1798, 2029
TatI	WGTACW	3 cut(s)	25, 445, 966
TauI	GCSGC	2 cut(s)	355, 1016
TfiI	GAWTC	7 cut(s)	118, 294, 343, 587, 812, 1313, 1433
Tru1I	TTAA	3 cut(s)	645, 1601, 1983
Tru9I	TTAA	3 cut(s)	645, 1601, 1983
TscAI	CASTG	3 cut(s)	162, 1735, 1975
TseFI	GTSAC	3 cut(s)	509, 1730, 1756
TseI	GCWGC	6 cut(s)	917, 920, 1531, 1573, 1742, 1777
Tsp45I	GTSAC	3 cut(s)	509, 1730, 1756
TspGWI	ACGGA	3 cut(s)	196, 427, 1635
TspMI	CCCGGG	1 cut(s)	617
TspRI	CASTG	3 cut(s)	162, 1735, 1975
VpaK11BI	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1640, 1897
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	2 cut(s)	973, 1400
XbaI	TCTAGA	1 cut(s)	1436
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 607
XmaI	CCCGGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	1057
XspI	CTAG	3 cut(s)	291, 756, 1437
Zsp2I	ATGCAT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.