AT1G51700

DNA binding transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013234
Physical Location & Seq
Forward (+)
19173880 .. 19175228
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51700.1

Sequence Viewer

Length: 585 bp
ATGCAGGATCTGACGTCAGCAGCAGCGTATTATCATCAGTCGATGATGATGACGACGGCGAAACAGAACCAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGACTCACCTAACACTAAATTCTGTTACTACAACAATTACAATCTGTCACAGCCCCGTCACTTTTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGGTGGTGGAACTCGGAAAAGCAACAAACGATCCGGTTCTTCTCCGTCTAGTAATCTCAAGAACCAAACCGTCGCTGAGAAACCTGATCATCATGGGTCCGGGTCAGAAGAAAAAGAAGAGAGAGTTTCGGGTCAAGAAATGAATCCGACCCGGATGTTATACGGGTTACCAGTTGGAGATCCGAATGGTGCGAGTTTTAGTTCGTTGTTGGCGTCGAATATGCAGATGGGTGGGCTTGTTTACGAGTCCGGGTCGCGTTGGTTACCAGGTATGGATTTGGGTTTGGGTTCGGTACGGAGGAGTGATGACACGTGGACTGACTTAGCTATGAACAGAATGGAGAAGAATTGA

Protein Analysis

194

Amino Acids

21.68

Weight (kDa)

8.96

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 31 - 87 1.6e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51700 AT3G21270
fragaria_vesca FvH4_6g32990
malus_domestica MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica Prupe.3G052300_v2.0.a1
pyrus_communis pycom17g18370
rosa_chinensis RchiOBHm_Chr2g0142541
rosa_laevigata RLG00000019965
rosa_multiflora Rmu_co8311091.1_g000001
rosa_roxburghii Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa Rorug02G0373800
rosa_samantha Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana Rw2G034870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
AccII CGCG 1 cut(s) 490
AciI CCGC 1 cut(s) 210
AclWI GGATC 3 cut(s) 15, 258, 407
AcsI RAATTY 1 cut(s) 131
AcvI CACGTG 1 cut(s) 546
AcyI GRCGYC 2 cut(s) 14, 446
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 543
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 2 cut(s) 97, 560
AluI AGCT 2 cut(s) 97, 560
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 3 cut(s) 15, 258, 407
AlwNI CAGNNNCTG 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 20, 23
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 3 cut(s) 334, 385, 484
AsuHPI GGTGA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 32, 35
BccI CCATC 1 cut(s) 454
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 3 cut(s) 334, 385, 484
BfaI CTAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
Bme1390I CCNGG 4 cut(s) 334, 385, 484, 501
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 4 cut(s) 334, 385, 484, 501
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 334, 385, 484
BsaAI YACGTR 1 cut(s) 546
BsaHI GRCGYC 2 cut(s) 14, 446
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 203, 404
BseBI CCWGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 225, 393
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 203, 404
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 2 cut(s) 32, 35
Bsh1236I CGCG 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 4 cut(s) 267, 333, 385, 483
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 7, 263, 319, 412
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 3 cut(s) 15, 258, 407
BspQI GCTCTTC 1 cut(s) 222
BsrI ACTGG 2 cut(s) 203, 404
BssMI GATC 4 cut(s) 7, 263, 319, 412
BssNI GRCGYC 2 cut(s) 14, 446
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 188, 304
Bst6I CTCTTC 2 cut(s) 222, 345
BstACI GRCGYC 2 cut(s) 14, 446
BstBAI YACGTR 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 309, 556
BstEII GGTNACC 2 cut(s) 399, 495
BstF5I GGATG 2 cut(s) 225, 393
BstFNI CGCG 1 cut(s) 490
BstKTI GATC 4 cut(s) 10, 266, 322, 415
BstMBI GATC 4 cut(s) 7, 263, 319, 412
BstNI CCWGG 1 cut(s) 501
BstPI GGTNACC 2 cut(s) 399, 495
BstSCI CCNGG 4 cut(s) 332, 383, 482, 499
BstUI CGCG 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 32, 35
BstX2I RGATCY 2 cut(s) 7, 412
BstYI RGATCY 2 cut(s) 7, 412
BtsCI GGATG 2 cut(s) 225, 393
CaiI CAGNNNCTG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 330
CseI GACGC 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 499
Csp6I GTAC 1 cut(s) 527
CviAII CATG 1 cut(s) 326
CviJI RGCY 4 cut(s) 97, 166, 469, 560
CviKI_1 RGCY 4 cut(s) 97, 166, 469, 560
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 2 cut(s) 309, 556
DpnI GATC 4 cut(s) 9, 265, 321, 414
DpnII GATC 4 cut(s) 7, 263, 319, 412
Eam1104I CTCTTC 2 cut(s) 222, 345
EarI CTCTTC 2 cut(s) 222, 345
Eco47I GGWCC 1 cut(s) 330
Eco72I CACGTG 1 cut(s) 546
Eco91I GGTNACC 2 cut(s) 399, 495
EcoO65I GGTNACC 2 cut(s) 399, 495
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 1 cut(s) 329
FaiI YATR 5 cut(s) 327, 394, 455, 506, 563
FatI CATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 21, 24
FokI GGATG 2 cut(s) 212, 400
Fsp4HI GCNGC 2 cut(s) 21, 24
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 21, 24
HapII CCGG 4 cut(s) 267, 333, 385, 483
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 2 cut(s) 14, 446
Hin1II CATG 1 cut(s) 329
HinfI GANTC 3 cut(s) 116, 376, 479
HpaII CCGG 4 cut(s) 267, 333, 385, 483
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 475, 549
Hpy188I TCNGA 5 cut(s) 12, 249, 340, 381, 417
Hpy188III TCNNGA 2 cut(s) 292, 368
Hpy8I GTNNAC 2 cut(s) 475, 549
Hpy99I CGWCG 5 cut(s) 58, 195, 236, 308, 451
HpyCH4III ACNGT 2 cut(s) 188, 304
HpyCH4IV ACGT 2 cut(s) 14, 545
HpyCH4V TGCA 3 cut(s) 4, 180, 457
HpyF3I CTNAG 2 cut(s) 309, 556
HpySE526I ACGT 2 cut(s) 14, 545
Hsp92I GRCGYC 2 cut(s) 14, 446
Hsp92II CATG 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 7, 263, 319, 412
LguI GCTCTTC 1 cut(s) 222
Lsp1109I GCAGC 2 cut(s) 32, 35
MabI ACCWGGT 1 cut(s) 499
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 14, 545
MaeIII GTNAC 9 cut(s) 78, 113, 137, 159, 170, 194, 221, 399, 495
MalI GATC 4 cut(s) 9, 265, 321, 414
MboI GATC 4 cut(s) 7, 263, 319, 412
MboII GAAGA 4 cut(s) 209, 264, 353, 362
MflI RGATCY 2 cut(s) 7, 412
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 131, 148, 580
MlyI GAGTC 2 cut(s) 110, 488
MmeI TCCRAC 2 cut(s) 388, 404
MnlI CCTC 2 cut(s) 117, 525
MspI CCGG 4 cut(s) 267, 333, 385, 483
MspR9I CCNGG 4 cut(s) 334, 385, 484, 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 490
NciI CCSGG 3 cut(s) 334, 385, 484
NdeII GATC 4 cut(s) 7, 263, 319, 412
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 3 cut(s) 113, 159, 170
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 2 cut(s) 22, 25
PleI GAGTC 2 cut(s) 110, 487
PmaCI CACGTG 1 cut(s) 546
PmlI CACGTG 1 cut(s) 546
PpsI GAGTC 2 cut(s) 110, 487
Ppu21I YACGTR 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 499
PspCI CACGTG 1 cut(s) 546
PspEI GGTNACC 2 cut(s) 399, 495
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 7, 412
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 222
SatI GCNGC 2 cut(s) 21, 24
Sau3AI GATC 4 cut(s) 7, 263, 319, 412
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 2 cut(s) 110, 488
ScrFI CCNGG 4 cut(s) 334, 385, 484, 501
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 17, 99, 124, 319, 505, 548, 562
SexAI ACCWGGT 1 cut(s) 499
SinI GGWCC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 131, 148, 580
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 332, 383, 482, 499
TaaI ACNGT 2 cut(s) 188, 304
TaiI ACGT 2 cut(s) 17, 548
TaqI TCGA 2 cut(s) 41, 449
TasI AATT 3 cut(s) 131, 148, 580
TfiI GAWTC 1 cut(s) 376
TseFI GTSAC 3 cut(s) 113, 159, 170
TseI GCWGC 2 cut(s) 20, 23
Tsp45I GTSAC 3 cut(s) 113, 159, 170
TspDTI ATGAA 2 cut(s) 389, 578
TspGWI ACGGA 2 cut(s) 267, 544
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 282
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.