Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Forward (+)

19911181 .. 19911903

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1176100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAGGACCCTGCAACTTTCCAACCCATGAAGCCCCAGTTTCCAGAGCAAGAGCAGCTGAAATGTCCGCGCTGCGAGTCCTCCAACACCAAGTTTTGCTACTACAACAACTACAACCTATCGCAGCCGCGCCACTTCTGCAAGAACTGCAAGCGGTACTGGACCAAAGGCGGCGCTTTGAGAAATATCCCCGTCGGCGGTGGAAGCAGGAAAAACACGAAGAAGTCGTCGTCGTCAGCTTCGAAACGTTCCTCATCGACTTCTTCATCGTCACTGTCGAGCTCTTCAGCAGCAGCAGCTCAGAACCCGGATCCGCAGCCCGACCGGACCCGGGCCTACGGCTCAAAAGTCGATCAAGACCGCGGAGTGATGGACTTCTCAGGGAGCTTCGGCTCCCTCCTGACTTCAAATGGGCAATTCGGGTCGCTTCTGGAGGGTCTGAATCCAAATGGGTCGGGTCTGAAACTGATGCAAATGGGTGATTTTGGGGAGAATTTGGATGCTGCAGGTAATGTGATGAATTCGGATCCGGGTCCGGGTTTAGAGGGCCAGAGCCATGGGAATCCAGAGAGCTATATGGGGTTGCAAAATGGTGATCCTTCAACGTCAAGCTGTTGGAATGGAGCCAATGGGTGGCCTGACCTTGCCATTTATACACCAGGTTCAAGTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

226

Amino Acids

24.08

Weight (kDa)

8.5

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	18 - 74	6.5e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccII	CGCG	3 cut(s)	70, 130, 363
AciI	CCGC	8 cut(s)	68, 128, 154, 171, 198, 314, 361, 363
AclI	AACGTT	1 cut(s)	247
AclWI	GGATC	5 cut(s)	305, 318, 521, 534, 590
AcsI	RAATTY	2 cut(s)	493, 520
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	4 cut(s)	197, 331, 536, 633
AgsI	TTSAA	3 cut(s)	408, 603, 666
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	7 cut(s)	58, 239, 282, 299, 387, 573, 612
AluI	AGCT	7 cut(s)	58, 239, 282, 299, 387, 573, 612
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	5 cut(s)	305, 318, 521, 534, 590
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	3 cut(s)	333, 547, 635
ApeKI	GCWGC	8 cut(s)	55, 72, 124, 290, 293, 296, 316, 503
ApoI	RAATTY	2 cut(s)	493, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	3 cut(s)	72, 132, 176
AspS9I	GGNCC	6 cut(s)	7, 162, 327, 333, 533, 547
AsuC2I	CCSGG	5 cut(s)	308, 331, 332, 531, 537
AsuHPI	GGTGA	2 cut(s)	491, 605
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	4 cut(s)	7, 162, 327, 533
BamHI	GGATCC	2 cut(s)	310, 526
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	8 cut(s)	59, 67, 136, 302, 305, 308, 328, 490
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	660
BcnI	CCSGG	5 cut(s)	308, 331, 332, 531, 537
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	497
Bme1390I	CCNGG	6 cut(s)	308, 331, 332, 531, 537, 660
Bme18I	GGWCC	4 cut(s)	7, 162, 327, 533
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	6 cut(s)	7, 162, 327, 333, 533, 547
BmiI	GGNNCC	7 cut(s)	9, 312, 329, 394, 528, 534, 625
BmrFI	CCNGG	6 cut(s)	308, 331, 332, 531, 537, 660
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	459, 490
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	242
BpuMI	CCSGG	5 cut(s)	308, 331, 332, 531, 537
BsaJI	CCNNGG	3 cut(s)	330, 361, 556
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 331, 536, 633
Bse1I	ACTGG	2 cut(s)	37, 164
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	330, 361, 556
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	197, 331, 536, 633
BseMII	CTCAG	2 cut(s)	314, 393
BseNI	ACTGG	2 cut(s)	37, 164
BseXI	GCAGC	8 cut(s)	59, 67, 136, 302, 305, 308, 328, 490
Bsh1236I	CGCG	3 cut(s)	70, 130, 363
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	335, 549, 637
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	5 cut(s)	308, 325, 331, 530, 536
BslI	CCNNNNNNNGG	4 cut(s)	197, 331, 536, 633
BsnI	GGCC	3 cut(s)	335, 549, 637
BsoBI	CYCGRG	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	4 cut(s)	310, 352, 526, 595
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	8 cut(s)	68, 128, 154, 171, 198, 314, 361, 363
BspANI	GGCC	3 cut(s)	335, 549, 637
BspCNI	CTCAG	2 cut(s)	313, 392
BspFNI	CGCG	3 cut(s)	70, 130, 363
BspLI	GGNNCC	7 cut(s)	9, 312, 329, 394, 528, 534, 625
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	5 cut(s)	305, 318, 521, 534, 590
BspQI	GCTCTTC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	37, 164
BssECI	CCNNGG	3 cut(s)	330, 361, 556
BssMI	GATC	4 cut(s)	310, 352, 526, 595
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	300, 379
BstDSI	CCRYGG	2 cut(s)	361, 556
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	3 cut(s)	70, 130, 363
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	72, 132, 176
BstKTI	GATC	4 cut(s)	313, 355, 529, 598
BstMBI	GATC	4 cut(s)	310, 352, 526, 595
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 138, 147, 204, 296
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	6 cut(s)	306, 329, 330, 529, 535, 658
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	3 cut(s)	70, 130, 363
BstV1I	GCAGC	8 cut(s)	59, 67, 136, 302, 305, 308, 328, 490
BstX2I	RGATCY	2 cut(s)	310, 526
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	310, 526
BsuRI	GGCC	3 cut(s)	335, 549, 637
BtgI	CCRYGG	2 cut(s)	361, 556
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	3 cut(s)	72, 132, 176
Cfr13I	GGNCC	6 cut(s)	7, 162, 327, 333, 533, 547
Cfr42I	CCGCGG	1 cut(s)	364
Cfr9I	CCCGGG	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	28, 557
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	300, 379
DpnI	GATC	4 cut(s)	312, 354, 528, 597
DpnII	GATC	4 cut(s)	310, 352, 526, 595
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	4 cut(s)	7, 162, 327, 533
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	31, 560
FaiI	YATR	5 cut(s)	29, 558, 576, 578, 654
FatI	CATG	2 cut(s)	27, 556
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	284
GlaI	GCGC	3 cut(s)	71, 131, 175
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	335, 549, 637
HapII	CCGG	5 cut(s)	308, 325, 331, 530, 536
HhaI	GCGC	3 cut(s)	72, 132, 176
Hin1II	CATG	2 cut(s)	31, 560
Hin6I	GCGC	3 cut(s)	70, 130, 174
HinP1I	GCGC	3 cut(s)	70, 130, 174
HinfI	GANTC	3 cut(s)	77, 442, 562
HpaII	CCGG	5 cut(s)	308, 325, 331, 530, 536
HphI	GGTGA	2 cut(s)	491, 605
Hpy188I	TCNGA	4 cut(s)	303, 441, 462, 526
Hpy188III	TCNNGA	5 cut(s)	44, 356, 400, 431, 566
Hpy99I	CGWCG	3 cut(s)	197, 232, 235
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	2 cut(s)	247, 605
HpyCH4V	TGCA	7 cut(s)	4, 14, 141, 150, 472, 506, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 138, 147, 204, 296
HpyF3I	CTNAG	2 cut(s)	300, 379
HpySE526I	ACGT	2 cut(s)	247, 605
Hsp92II	CATG	2 cut(s)	31, 560
HspAI	GCGC	3 cut(s)	70, 130, 174
KspI	CCGCGG	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	310, 352, 526, 595
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	384, 398, 623
Lsp1109I	GCAGC	8 cut(s)	59, 67, 136, 302, 305, 308, 328, 490
LweI	GCATC	2 cut(s)	459, 490
MabI	ACCWGGT	1 cut(s)	658
MaeII	ACGT	2 cut(s)	247, 605
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	4 cut(s)	312, 354, 528, 597
MboI	GATC	4 cut(s)	310, 352, 526, 595
MboII	GAAGA	3 cut(s)	232, 255, 276
MflI	RGATCY	2 cut(s)	310, 526
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	416, 493, 520
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	46, 108, 596
MnlI	CCTC	5 cut(s)	91, 262, 407, 427, 538
MspA1I	CMGCKG	2 cut(s)	58, 363
MspI	CCGG	5 cut(s)	308, 325, 331, 530, 536
MspR9I	CCNGG	6 cut(s)	308, 331, 332, 531, 537, 660
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	3 cut(s)	70, 130, 363
MwoI	GCNNNNNNNGC	5 cut(s)	55, 138, 147, 204, 296
NciI	CCSGG	5 cut(s)	308, 331, 332, 531, 537
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	4 cut(s)	310, 352, 526, 595
NlaIII	CATG	2 cut(s)	31, 560
NlaIV	GGNNCC	7 cut(s)	9, 312, 329, 394, 528, 534, 625
NmuCI	GTSAC	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	224, 239, 275
PfeI	GAWTC	2 cut(s)	442, 562
PflMI	CCANNNNNTGG	1 cut(s)	633
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	7 cut(s)	9, 312, 329, 394, 528, 534, 625
PspPI	GGNCC	6 cut(s)	7, 162, 327, 333, 533, 547
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	310, 526
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	364
SapI	GCTCTTC	1 cut(s)	289
Sau3AI	GATC	4 cut(s)	310, 352, 526, 595
Sau96I	GGNCC	6 cut(s)	7, 162, 327, 333, 533, 547
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	6 cut(s)	308, 331, 332, 531, 537, 660
SduI	GDGCHC	1 cut(s)	284
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	459, 490
SfcI	CTRYAG	1 cut(s)	504
Sfr303I	CCGCGG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	242
SgrBI	CCGCGG	1 cut(s)	364
SinI	GGWCC	4 cut(s)	7, 162, 327, 533
SmaI	CCCGGG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	416, 493, 520
SsiI	CCGC	8 cut(s)	68, 128, 154, 171, 198, 314, 361, 363
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	6 cut(s)	306, 329, 330, 529, 535, 658
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	2 cut(s)	250, 608
TaqI	TCGA	4 cut(s)	242, 257, 278, 351
TasI	AATT	3 cut(s)	416, 493, 520
TauI	GCSGC	2 cut(s)	130, 174
TfiI	GAWTC	2 cut(s)	442, 562
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	8 cut(s)	55, 72, 124, 290, 293, 296, 316, 503
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	44, 255, 533
TspMI	CCCGGG	1 cut(s)	330
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	633
VpaK11BI	GGWCC	4 cut(s)	7, 162, 327, 533
XapI	RAATTY	2 cut(s)	493, 520
XmaI	CCCGGG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.