Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Forward (+)

3697981 .. 3701414

Gene Structure 3434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAAGACCAAACAACGTTTCAACCCATGAAACCCCAATTTCCAGAGCAAGAACAGCTGAAATGTCCACGCTGTGATTCCCCTAACACTAAGTTTTGCTACTACAACAACTACAATCTCTCACAGCCTCGTCACTTTTGCAAGAACTGCAGAAGGTACTGGACCAAAGGTGGCTCTCTGAGAAACATCCCTGTTGGTGGTGGAAGCAGAAAGAACACAAAGAGATCATCATCATCTGCTTCAAAACGCTCCTCATCAACTTCCTCATCATCAGTGTCAAGCTCATCAGCAGCAACCGCAGCAGCTCAGAACCCGGATCCACAGCCTGACCGGACCCGGGTCTATGGCCCGAAAATCGATCAAGACCGTGGGGTGCTGGACATCTCAGGGAGCTTCAGCTCACTCCTGACTTCAAATGGGCAGTTTGGGTCTCTTCTGGAGGGTCTGAACCCAAATGGGTCGGGTCTAAAACTGATGCAAATGGGTGACTTTGGGGTGAACTTGGATTCAGGTAATGGGTTGAATTCGGATCCGGGTGTGAACCCGGGTTTGGAGGCCCAGAGCAATGGTAACCCGGAAAGCTATATGGGTTTGCAAAATGGTGATTCTTCAAGCTGTTGGAATGGGGGCAATGGGTGGCCTGACCTTGCCATTTATACACCAGGTTCAAGTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

227

Amino Acids

24.25

Weight (kDa)

8.74

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	297
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	4 cut(s)	311, 324, 524, 537
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	197, 337, 550
AgsI	TTSAA	6 cut(s)	23, 243, 414, 523, 612, 669
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 533, 565
AluBI	AGCT	7 cut(s)	58, 282, 305, 393, 399, 582, 615
AluI	AGCT	7 cut(s)	58, 282, 305, 393, 399, 582, 615
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	4 cut(s)	311, 324, 524, 537
Ama87I	CYCGRG	2 cut(s)	336, 544
AoxI	GGCC	3 cut(s)	346, 555, 638
ApeKI	GCWGC	3 cut(s)	290, 299, 302
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	162, 333, 347, 556
AsuC2I	CCSGG	7 cut(s)	314, 337, 338, 534, 545, 546, 575
AsuHPI	GGTGA	3 cut(s)	497, 508, 614
AvaI	CYCGRG	2 cut(s)	336, 544
AvaII	GGWCC	2 cut(s)	162, 333
BamHI	GGATCC	2 cut(s)	316, 529
BbvI	GCAGC	3 cut(s)	302, 311, 314
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	7 cut(s)	314, 337, 338, 534, 545, 546, 575
BcoDI	GTCTC	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	3 cut(s)	291, 300, 303
BlsI	GCNGC	3 cut(s)	292, 301, 304
Bme1390I	CCNGG	8 cut(s)	314, 337, 338, 534, 545, 546, 575, 663
Bme18I	GGWCC	2 cut(s)	162, 333
BmeT110I	CYCGRG	2 cut(s)	336, 544
BmgT120I	GGNCC	4 cut(s)	162, 333, 347, 556
BmiI	GGNNCC	3 cut(s)	318, 335, 531
BmrFI	CCNGG	8 cut(s)	314, 337, 338, 534, 545, 546, 575, 663
BmsI	GCATC	1 cut(s)	465
BoxI	GACNNNNGTC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	7 cut(s)	314, 337, 338, 534, 545, 546, 575
Bsa29I	ATCGAT	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	336, 367, 544
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 337, 550
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	571, 637
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	336, 367, 544
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	197, 337, 550
BseMI	GCAATG	2 cut(s)	571, 637
BseMII	CTCAG	3 cut(s)	170, 320, 399
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	302, 311, 314
BshFI	GGCC	3 cut(s)	348, 557, 640
BshVI	ATCGAT	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	336, 544
BsiSI	CCGG	6 cut(s)	314, 331, 337, 533, 545, 575
BslI	CCNNNNNNNGG	3 cut(s)	197, 337, 550
BsmAI	GTCTC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	348, 557, 640
Bso31I	GGTCTC	1 cut(s)	435
BsoBI	CYCGRG	2 cut(s)	336, 544
Bsp143I	GATC	4 cut(s)	224, 316, 358, 529
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	3 cut(s)	348, 557, 640
BspCNI	CTCAG	3 cut(s)	171, 319, 398
BspDI	ATCGAT	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	318, 335, 531
BspMAI	CTGCAG	1 cut(s)	152
BspPI	GGATC	4 cut(s)	311, 324, 524, 537
BspTNI	GGTCTC	1 cut(s)	435
BsrDI	GCAATG	2 cut(s)	571, 637
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	336, 367, 544
BssMI	GATC	4 cut(s)	224, 316, 358, 529
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstDEI	CTNAG	4 cut(s)	90, 179, 306, 385
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	227, 319, 361, 532
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	4 cut(s)	224, 316, 358, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 147, 296, 299
BstNI	CCWGG	1 cut(s)	663
BstPAI	GACNNNNGTC	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	8 cut(s)	312, 335, 336, 532, 543, 544, 573, 661
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	302, 311, 314
BstX2I	RGATCY	2 cut(s)	316, 529
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	316, 529
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	348, 557, 640
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	162, 333, 347, 556
Cfr9I	CCCGGG	2 cut(s)	336, 544
ClaI	ATCGAT	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	4 cut(s)	90, 179, 306, 385
DpnI	GATC	4 cut(s)	226, 318, 360, 531
DpnII	GATC	4 cut(s)	224, 316, 358, 529
DraIII	CACNNNGTG	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	162, 333
Eco57I	CTGAAG	1 cut(s)	379
Eco88I	CYCGRG	2 cut(s)	336, 544
Eco91I	GGTNACC	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	661
FaeI	CATG	1 cut(s)	31
FaiI	YATR	5 cut(s)	29, 345, 585, 587, 657
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	291, 300, 303
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	291, 300, 303
GluI	GCNGC	3 cut(s)	291, 300, 303
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	348, 557, 640
HapII	CCGG	6 cut(s)	314, 331, 337, 533, 545, 575
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	3 cut(s)	77, 506, 605
HpaII	CCGG	6 cut(s)	314, 331, 337, 533, 545, 575
HphI	GGTGA	3 cut(s)	497, 508, 614
Hpy166II	GTNNAC	3 cut(s)	68, 499, 541
Hpy188I	TCNGA	4 cut(s)	180, 309, 447, 529
Hpy188III	TCNNGA	4 cut(s)	44, 362, 406, 437
Hpy8I	GTNNAC	3 cut(s)	68, 499, 541
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	4, 141, 150, 478, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 147, 296, 299
HpyF3I	CTNAG	4 cut(s)	90, 179, 306, 385
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	224, 316, 358, 529
LmnI	GCTCC	2 cut(s)	254, 390
Lsp1109I	GCAGC	3 cut(s)	302, 311, 314
LweI	GCATC	1 cut(s)	465
MabI	ACCWGGT	1 cut(s)	661
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	131, 485, 569
MalI	GATC	4 cut(s)	226, 318, 360, 531
MboI	GATC	4 cut(s)	224, 316, 358, 529
MboII	GAAGA	2 cut(s)	425, 600
MflI	RGATCY	2 cut(s)	316, 529
MluCI	AATT	2 cut(s)	38, 523
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	5 cut(s)	138, 262, 274, 433, 547
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	6 cut(s)	314, 331, 337, 533, 545, 575
MspR9I	CCNGG	8 cut(s)	314, 337, 338, 534, 545, 546, 575, 663
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	4 cut(s)	55, 147, 296, 299
NciI	CCSGG	7 cut(s)	314, 337, 338, 534, 545, 546, 575
NdeII	GATC	4 cut(s)	224, 316, 358, 529
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	3 cut(s)	318, 335, 531
NmuCI	GTSAC	2 cut(s)	131, 485
PfeI	GAWTC	3 cut(s)	77, 506, 605
PkrI	GCNGC	3 cut(s)	292, 301, 304
PshAI	GACNNNNGTC	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	661
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	3 cut(s)	318, 335, 531
PspPI	GGNCC	4 cut(s)	162, 333, 347, 556
PstI	CTGCAG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	316, 529
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	3 cut(s)	291, 300, 303
Sau3AI	GATC	4 cut(s)	224, 316, 358, 529
Sau96I	GGNCC	4 cut(s)	162, 333, 347, 556
ScrFI	CCNGG	8 cut(s)	314, 337, 338, 534, 545, 546, 575, 663
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	2 cut(s)	162, 333
SmaI	CCCGGG	2 cut(s)	338, 546
Sse9I	AATT	2 cut(s)	38, 523
SsiI	CCGC	1 cut(s)	297
StyD4I	CCNGG	8 cut(s)	312, 335, 336, 532, 543, 544, 573, 661
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	38, 523
TfiI	GAWTC	3 cut(s)	77, 506, 605
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	131, 485
TseI	GCWGC	3 cut(s)	290, 299, 302
Tsp45I	GTSAC	2 cut(s)	131, 485
TspDTI	ATGAA	1 cut(s)	44
TspMI	CCCGGG	2 cut(s)	336, 544
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	162, 333
XapI	RAATTY	1 cut(s)	523
XmaI	CCCGGG	2 cut(s)	336, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.