Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Reverse (-)

26049131 .. 26051764

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAAGACCCAACAACGTTCCAACCCATCAAGCCTCAATTCCCAGAGCAAGAGCAGCTCAAATGTCCACGCTGTGATTCCTCAAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCAGCCTCGCCACTTTTGCAAGAACTGCAAGAGGTACTGGACCAAAGGTGGTTCCCTCAGAAACATTCCAATAGGTGGTGGAAGCAGAAAGAGCACCAAGAGATCTTCTTCGGGTTCGAAACGATCTTCTTCATCGGCTACTAATTCATCATCATCAACACTCTCAAGCTCTGCAGCTGCAGCAGCAGCAGGAGCTCAGAACCAAATGGGTCAGAAAATCGATCAAGAAAATCCGATGGTGGGTATCTCAGGGAGCTTCAGCTCAATGTTAACTTCTAATGATCAATTTGGGTCTCTTATGGAGGGTCTGAATCCAAATGGGCCGGGTTTGAAGCTGATGCAAATGGGTGATTTTGGAGAGAATGTGGTGGATTCATCAGGACATGGTTTGAATTTGGATCCGGGTTTGGAGGTCCAGAGCAATGGGAATCCAGAGAGCTACATGAGTTTGCAAAATGGTGATTGGAATGGGAGCAGTGGCTGGCCTGACCTTGCCATTTACACACCAGGTATTTGCATCCCTCTTTCAACCTCTTATAAATGCTCTGGATCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

227

Amino Acids

24.18

Weight (kDa)

8.65

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	18 - 74	8.5e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccB7I	CCANNNNNTGG	1 cut(s)	197
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	3 cut(s)	515, 528, 679
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	3 cut(s)	454, 514, 651
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	8 cut(s)	58, 291, 299, 317, 378, 384, 457, 561
AluI	AGCT	8 cut(s)	58, 291, 299, 317, 378, 384, 457, 561
Alw21I	GWGCWC	2 cut(s)	218, 319
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	3 cut(s)	515, 528, 679
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	443, 605
ApeKI	GCWGC	7 cut(s)	55, 124, 296, 299, 302, 305, 308
ApoI	RAATTY	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	162, 443, 535
AsuC2I	CCSGG	2 cut(s)	447, 525
AsuHPI	GGTGA	2 cut(s)	482, 593
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	162, 535
BamHI	GGATCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	319
Bbv12I	GWGCWC	2 cut(s)	218, 319
BbvI	GCAGC	7 cut(s)	67, 136, 286, 308, 314, 317, 320
BccI	CCATC	2 cut(s)	35, 352
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	447, 525
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	294, 300
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	7 cut(s)	56, 125, 297, 300, 303, 306, 309
BlsI	GCNGC	7 cut(s)	57, 126, 298, 301, 304, 307, 310
Bme1390I	CCNGG	3 cut(s)	447, 525, 630
Bme18I	GGWCC	2 cut(s)	162, 535
BmgT120I	GGNCC	3 cut(s)	162, 443, 535
BmiI	GGNNCC	2 cut(s)	175, 522
BmrFI	CCNGG	3 cut(s)	447, 525, 630
BmsI	GCATC	2 cut(s)	450, 648
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	447, 525
Bsa29I	ATCGAT	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	3 cut(s)	193, 332, 384
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	7 cut(s)	67, 136, 286, 308, 314, 317, 320
BshFI	GGCC	2 cut(s)	445, 607
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	218, 319
BsiSI	CCGG	2 cut(s)	446, 524
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	445, 607
Bso31I	GGTCTC	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	218, 319
Bsp143I	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
BspANI	GGCC	2 cut(s)	445, 607
BspCNI	CTCAG	3 cut(s)	192, 331, 383
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	175, 522
BspMAI	CTGCAG	2 cut(s)	298, 304
BspPI	GGATC	3 cut(s)	515, 528, 679
BspT104I	TTCGAA	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
Bst2UI	CCWGG	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	3 cut(s)	179, 318, 370
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	6 cut(s)	227, 248, 346, 406, 523, 674
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 213, 302, 305, 308, 314
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	3 cut(s)	445, 523, 628
BstSFI	CTRYAG	2 cut(s)	294, 300
BstV1I	GCAGC	7 cut(s)	67, 136, 286, 308, 314, 317, 320
BstX2I	RGATCY	2 cut(s)	224, 520
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	2 cut(s)	224, 520
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	445, 607
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	603
Cfr13I	GGNCC	3 cut(s)	162, 443, 535
ClaI	ATCGAT	1 cut(s)	342
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	506, 565
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	179, 318, 370
DpnI	GATC	6 cut(s)	226, 247, 345, 405, 522, 673
DpnII	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
DraIII	CACNNNGTG	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	162, 535
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	2 cut(s)	509, 568
FaiI	YATR	4 cut(s)	422, 507, 566, 660
FatI	CATG	2 cut(s)	505, 564
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	7 cut(s)	56, 125, 297, 300, 303, 306, 309
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	7 cut(s)	56, 125, 297, 300, 303, 306, 309
GluI	GCNGC	7 cut(s)	56, 125, 297, 300, 303, 306, 309
HaeIII	GGCC	2 cut(s)	445, 607
HapII	CCGG	2 cut(s)	446, 524
Hin1II	CATG	2 cut(s)	509, 568
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	4 cut(s)	77, 433, 494, 550
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	2 cut(s)	446, 524
HphI	GGTGA	2 cut(s)	482, 593
Hpy166II	GTNNAC	2 cut(s)	68, 393
Hpy188I	TCNGA	5 cut(s)	182, 321, 336, 357, 432
Hpy188III	TCNNGA	5 cut(s)	347, 501, 538, 554, 669
Hpy8I	GTNNAC	2 cut(s)	68, 393
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	8 cut(s)	4, 141, 150, 296, 302, 463, 574, 639
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 213, 302, 305, 308, 314
HpyF3I	CTNAG	3 cut(s)	179, 318, 370
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	509, 568
Ksp22I	TGATCA	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
LmnI	GCTCC	3 cut(s)	314, 375, 594
Lsp1109I	GCAGC	7 cut(s)	67, 136, 286, 308, 314, 317, 320
LweI	GCATC	2 cut(s)	450, 648
MabI	ACCWGGT	1 cut(s)	628
MaeII	ACGT	1 cut(s)	17
MalI	GATC	6 cut(s)	226, 247, 345, 405, 522, 673
MboI	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
MboII	GAAGA	4 cut(s)	219, 222, 240, 243
MflI	RGATCY	2 cut(s)	224, 520
MhlI	GDGCHC	2 cut(s)	218, 319
MluCI	AATT	4 cut(s)	38, 265, 407, 514
MmeI	TCCRAC	1 cut(s)	46
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	446, 524
MspR9I	CCNGG	3 cut(s)	447, 525, 630
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 213, 302, 305, 308, 314
NciI	CCSGG	2 cut(s)	447, 525
NdeII	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
NlaIII	CATG	2 cut(s)	509, 568
NlaIV	GGNNCC	2 cut(s)	175, 522
NspV	TTCGAA	1 cut(s)	239
PfeI	GAWTC	4 cut(s)	77, 433, 494, 550
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	57, 126, 298, 301, 304, 307, 310
PsiI	TTATAA	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	319
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	175, 522
PspPI	GGNCC	3 cut(s)	162, 443, 535
PstI	CTGCAG	2 cut(s)	298, 304
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	224, 520
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	7 cut(s)	56, 125, 297, 300, 303, 306, 309
Sau3AI	GATC	6 cut(s)	224, 245, 343, 403, 520, 671
Sau96I	GGNCC	3 cut(s)	162, 443, 535
ScrFI	CCNGG	3 cut(s)	447, 525, 630
SduI	GDGCHC	2 cut(s)	218, 319
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	450, 648
SfcI	CTRYAG	2 cut(s)	294, 300
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	2 cut(s)	162, 535
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	4 cut(s)	38, 265, 407, 514
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	445, 523, 628
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	239, 342
TasI	AATT	4 cut(s)	38, 265, 407, 514
TfiI	GAWTC	4 cut(s)	77, 433, 494, 550
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	7 cut(s)	55, 124, 296, 299, 302, 305, 308
TspDTI	ATGAA	3 cut(s)	243, 258, 486
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	162, 535
XapI	RAATTY	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.