RLG00000019965

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013234
Physical Location & Seq
Reverse (-)
59314340 .. 59315616
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019965

Sequence Viewer

Length: 726 bp
ATGCAAGACCCATCAACCTTCCAACCCATGAAAGCCCAATTCCCAGAGCAAGAGCAGCTGAAATGTCCACGCTGTGATTCCTCAAATACCAAGTTCTGCTACTACAACAACTACAATCTGTCGCAGCCTCGCCACTTCTGCAAGAACTGCAAGAGGTACTGGACCAAAGGTGGTTCCCTCAGAAACATTCCAGTAGGCGGTGGAAGCAGAAAGAACACCAAGAGATCTTCTTCGGGTTCGAAACGTTCTTCATCGGCTACTAATTCCTCATCATCAACACTGTCGAGCTCAGCAGCTGCGGCTGCAGCAGCAGCAGCAGCAGCTCAGAACCAGGATCCGCAGCCGGACCGGACTCGGCTCTACGGCCCGAAAATGGATCCAGATAATCCGATGCTGGATATTTCTGGGAGCTTCAGCTCACTGTTAACATCTAATGATCAGTTTGGGTCTCTTATGGAGGGTCTGAATCCAAATGGGTCGGGTTTGAAACTGATGCAAATGGGTGAGTTTGGGGAGAATGTGGTGGATTCATCAGGACATGGGTTGAATTCGGATCCGGGTTTGGAGGTCCACAGCAATGGGAATCCAGAGAGCTATATGGGTTTGCAAAGTGGGGATTCGAGCTGTTGGAATGGGAGCAATGGGTGGCCTGACCTTGCCATTTACACACCAGATTGTGAGTTGAATATGGGATTTGACATCGTGTTGCTTAAGAGAATGATATGA

Protein Analysis

242

Amino Acids

26.02

Weight (kDa)

6.81

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 74 8.6e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51700 AT3G21270
fragaria_vesca FvH4_6g32990
malus_domestica MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica Prupe.3G052300_v2.0.a1
pyrus_communis pycom17g18370
rosa_chinensis RchiOBHm_Chr2g0142541
rosa_laevigata RLG00000019965
rosa_multiflora Rmu_co8311091.1_g000001
rosa_roxburghii Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa Rorug02G0373800
rosa_samantha Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana Rw2G034870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 198, 299, 338
AclI AACGTT 1 cut(s) 244
AclWI GGATC 6 cut(s) 329, 342, 371, 384, 548, 561
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 397
AdeI CACNNNGTG 1 cut(s) 74
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 197, 373
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 3 cut(s) 487, 547, 685
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 8 cut(s) 58, 288, 296, 323, 411, 417, 594, 624
AluI AGCT 8 cut(s) 58, 288, 296, 323, 411, 417, 594, 624
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 6 cut(s) 329, 342, 371, 384, 548, 561
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 2 cut(s) 364, 647
ApoI RAATTY 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 162, 346, 365, 568
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 1 cut(s) 515
AsuII TTCGAA 1 cut(s) 239
AvaII GGWCC 3 cut(s) 162, 346, 568
BamHI GGATCC 3 cut(s) 334, 376, 553
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 710
BglII AGATCT 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 332, 558
Bme18I GGWCC 3 cut(s) 162, 346, 568
BmgT120I GGNCC 4 cut(s) 162, 346, 365, 568
BmiI GGNNCC 4 cut(s) 175, 336, 378, 555
BmrFI CCNGG 2 cut(s) 332, 558
BmsI GCATC 2 cut(s) 381, 483
Bpu1102I GCTNAGC 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 453
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 373
Bse1I ACTGG 2 cut(s) 164, 191
Bse3DI GCAATG 2 cut(s) 583, 646
BseBI CCWGG 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 197, 373
BseMI GCAATG 2 cut(s) 583, 646
BseMII CTCAG 3 cut(s) 193, 303, 338
BseNI ACTGG 2 cut(s) 164, 191
BshFI GGCC 2 cut(s) 366, 649
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 3 cut(s) 344, 349, 557
BslI CCNNNNNNNGG 2 cut(s) 197, 373
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 2 cut(s) 366, 649
Bso31I GGTCTC 1 cut(s) 453
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 5 cut(s) 224, 334, 376, 436, 553
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 3 cut(s) 198, 299, 338
BspANI GGCC 2 cut(s) 366, 649
BspCNI CTCAG 3 cut(s) 192, 302, 337
BspLI GGNNCC 4 cut(s) 175, 336, 378, 555
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 6 cut(s) 329, 342, 371, 384, 548, 561
BspT104I TTCGAA 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 453
BsrDI GCAATG 2 cut(s) 583, 646
BsrI ACTGG 2 cut(s) 164, 191
BssMI GATC 5 cut(s) 224, 334, 376, 436, 553
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 282, 423
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 179, 289, 324
BstKTI GATC 5 cut(s) 227, 337, 379, 439, 556
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 5 cut(s) 224, 334, 376, 436, 553
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 330, 556
BstSFI CTRYAG 1 cut(s) 303
BstX2I RGATCY 4 cut(s) 224, 334, 376, 553
BstXI CCANNNNNNTGG 1 cut(s) 578
BstYI RGATCY 4 cut(s) 224, 334, 376, 553
BsuRI GGCC 2 cut(s) 366, 649
BtsIMutI CAGTG 2 cut(s) 278, 419
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 162, 346, 365, 568
CpoI CGGWCCG 1 cut(s) 346
Csp6I GTAC 1 cut(s) 157
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 2 cut(s) 28, 539
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 179, 289, 324
DpnI GATC 5 cut(s) 226, 336, 378, 438, 555
DpnII GATC 5 cut(s) 224, 334, 376, 436, 553
DraIII CACNNNGTG 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 453
Eco47I GGWCC 3 cut(s) 162, 346, 568
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 31, 542
FaiI YATR 7 cut(s) 29, 455, 540, 597, 599, 689, 724
FatI CATG 2 cut(s) 27, 538
FbaI TGATCA 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 290
HaeIII GGCC 2 cut(s) 366, 649
HapII CCGG 3 cut(s) 344, 349, 557
Hin1II CATG 2 cut(s) 31, 542
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 6 cut(s) 77, 352, 466, 527, 583, 617
HpaI GTTAAC 1 cut(s) 426
HpaII CCGG 3 cut(s) 344, 349, 557
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 68, 426, 571
Hpy188I TCNGA 5 cut(s) 182, 327, 390, 465, 553
Hpy188III TCNNGA 3 cut(s) 380, 534, 587
Hpy8I GTNNAC 3 cut(s) 68, 426, 571
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 282, 423
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 6 cut(s) 4, 141, 150, 305, 496, 607
HpyF3I CTNAG 3 cut(s) 179, 289, 324
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 2 cut(s) 31, 542
Ksp22I TGATCA 1 cut(s) 436
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 5 cut(s) 224, 334, 376, 436, 553
LmnI GCTCC 2 cut(s) 408, 636
LweI GCATC 2 cut(s) 381, 483
MaeII ACGT 1 cut(s) 244
MalI GATC 5 cut(s) 226, 336, 378, 438, 555
MboI GATC 5 cut(s) 224, 334, 376, 436, 553
MboII GAAGA 3 cut(s) 219, 222, 240
MflI RGATCY 4 cut(s) 224, 334, 376, 553
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 3 cut(s) 38, 262, 547
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 46, 608
MnlI CCTC 7 cut(s) 91, 138, 147, 188, 277, 451, 559
MseI TTAA 2 cut(s) 425, 711
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 58, 296
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 3 cut(s) 344, 349, 557
MspR9I CCNGG 2 cut(s) 332, 558
MvaI CCWGG 1 cut(s) 332
NciI CCSGG 1 cut(s) 558
NdeII GATC 5 cut(s) 224, 334, 376, 436, 553
NlaIII CATG 2 cut(s) 31, 542
NlaIV GGNNCC 4 cut(s) 175, 336, 378, 555
NmeAIII GCCGAG 1 cut(s) 334
NspV TTCGAA 1 cut(s) 239
PfeI GAWTC 5 cut(s) 77, 466, 527, 583, 617
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 175, 336, 378, 555
PspPI GGNCC 4 cut(s) 162, 346, 365, 568
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 4 cut(s) 224, 334, 376, 553
PvuII CAGCTG 2 cut(s) 58, 296
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 576
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 425, 711
Sau3AI GATC 5 cut(s) 224, 334, 376, 436, 553
Sau96I GGNCC 4 cut(s) 162, 346, 365, 568
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 332, 558
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 2 cut(s) 381, 483
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 3 cut(s) 162, 346, 568
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 3 cut(s) 38, 262, 547
SsiI CCGC 3 cut(s) 198, 299, 338
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 330, 556
TaaI ACNGT 2 cut(s) 282, 423
TaiI ACGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 239, 284, 620
TasI AATT 3 cut(s) 38, 262, 547
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 5 cut(s) 77, 466, 527, 583, 617
Tru1I TTAA 2 cut(s) 425, 711
Tru9I TTAA 2 cut(s) 425, 711
TscAI CASTG 2 cut(s) 285, 426
TspDTI ATGAA 3 cut(s) 44, 240, 519
TspRI CASTG 2 cut(s) 285, 426
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 162, 346, 568
XapI RAATTY 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.