Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Reverse (-)

57406096 .. 57407466

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAAGACCCAACAACGTTCCAATCCATGAAAGCCCAATTCCCAGAGCAAGAGCAGCTGAAATGTCCACGCTGTGATTCCTCAAACACCAAGTTCTGCTACTACAACAACTACAATCTGTCGCAGCCTCGCCACTTCTGCAAGAACTGCAAGAGGTACTGGACCAAAGGTGGTTCCCTCAGAAACATTCCAATAGGCGGTGGAAGCAGAAAGAACACCAAGAGATCTTCTTCCGGTTCGAAACGTTCTTCATCGGCTACTAATTCCTCATCATCAACCCTGTCAAGCTCAGCAGGTGCAGTTGCAGCAGCAGCAGCAGCTCAGAACCAGGATCCGCAGCCGGACCGGACTCGGCTCTACGGCCCGAAAATGGATCCAGATAATCCGATGCTGGATATTTCTGGGAGCTTCAGCTCACTGTTAACATCTAATGATCAGTTTGGGTCTCTCATGGAGGGTCTGAATCCAAATGGGTCGGGGTTGAAACTGATGCAAATGGGTGAGTTTGGGGAGAATGTGGTGGATTCATCAGGACATGGGTTGAATTCGGATCCGGGTTTGGAGGTCCAGAGCAGTGGGAATCCAGGGAGCTATATGGGTTTGCAAAGTGGGGATTCGAGCTGTTGGAATGGGAGCAATGGGTGGCCTGACCTTGCCATTTACACACCAGGTTCAAGTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

228

Amino Acids

24.39

Weight (kDa)

8.19

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	18 - 74	8.5e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AciI	CCGC	2 cut(s)	198, 335
AclI	AACGTT	2 cut(s)	17, 244
AclWI	GGATC	6 cut(s)	326, 339, 368, 381, 545, 558
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	197, 370
AgsI	TTSAA	3 cut(s)	484, 544, 675
AjnI	CCWGG	3 cut(s)	327, 583, 667
AluBI	AGCT	7 cut(s)	58, 288, 320, 408, 414, 591, 621
AluI	AGCT	7 cut(s)	58, 288, 320, 408, 414, 591, 621
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	6 cut(s)	326, 339, 368, 381, 545, 558
AoxI	GGCC	2 cut(s)	361, 644
ApeKI	GCWGC	8 cut(s)	55, 124, 305, 308, 311, 314, 317, 337
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	162, 343, 362, 565
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	162, 343, 565
BamHI	GGATCC	3 cut(s)	331, 373, 550
BbvI	GCAGC	8 cut(s)	67, 136, 317, 320, 323, 326, 329, 349
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	329, 585, 669
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	284
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	8 cut(s)	56, 125, 306, 309, 312, 315, 318, 338
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	8 cut(s)	57, 126, 307, 310, 313, 316, 319, 339
Bme1390I	CCNGG	4 cut(s)	329, 555, 585, 669
Bme18I	GGWCC	3 cut(s)	162, 343, 565
BmgT120I	GGNCC	4 cut(s)	162, 343, 362, 565
BmiI	GGNNCC	4 cut(s)	175, 333, 375, 552
BmrFI	CCNGG	4 cut(s)	329, 555, 585, 669
BmsI	GCATC	2 cut(s)	378, 480
Bpu1102I	GCTNAGC	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	584
BsaWI	WCCGGW	2 cut(s)	233, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 370
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	3 cut(s)	329, 585, 669
BseDI	CCNNGG	1 cut(s)	584
BseLI	CCNNNNNNNGG	2 cut(s)	197, 370
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	3 cut(s)	193, 303, 335
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	8 cut(s)	67, 136, 317, 320, 323, 326, 329, 349
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	363, 646
BsiSI	CCGG	4 cut(s)	234, 341, 346, 554
BslI	CCNNNNNNNGG	2 cut(s)	197, 370
BsmAI	GTCTC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	363, 646
Bso31I	GGTCTC	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	224, 331, 373, 433, 550
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	198, 335
BspANI	GGCC	2 cut(s)	363, 646
BspCNI	CTCAG	3 cut(s)	192, 302, 334
BspLI	GGNNCC	4 cut(s)	175, 333, 375, 552
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	6 cut(s)	326, 339, 368, 381, 545, 558
BspT104I	TTCGAA	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	5 cut(s)	224, 331, 373, 433, 550
Bst2UI	CCWGG	3 cut(s)	329, 585, 669
Bst4CI	ACNGT	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	179, 289, 321
BstKTI	GATC	5 cut(s)	227, 334, 376, 436, 553
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	5 cut(s)	224, 331, 373, 433, 550
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 305, 311, 314, 317
BstNI	CCWGG	3 cut(s)	329, 585, 669
BstSCI	CCNGG	4 cut(s)	327, 553, 583, 667
BstV1I	GCAGC	8 cut(s)	67, 136, 317, 320, 323, 326, 329, 349
BstX2I	RGATCY	4 cut(s)	224, 331, 373, 550
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	4 cut(s)	224, 331, 373, 550
BsuRI	GGCC	2 cut(s)	363, 646
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	416, 580
BveI	ACCTGC	1 cut(s)	284
Cfr13I	GGNCC	4 cut(s)	162, 343, 362, 565
CpoI	CGGWCCG	1 cut(s)	343
CsiI	ACCWGGT	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	157
CspI	CGGWCCG	1 cut(s)	343
CviAII	CATG	3 cut(s)	28, 451, 536
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	179, 289, 321
DpnI	GATC	5 cut(s)	226, 333, 375, 435, 552
DpnII	GATC	5 cut(s)	224, 331, 373, 433, 550
DraIII	CACNNNGTG	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	3 cut(s)	162, 343, 565
Eco57I	CTGAAG	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	3 cut(s)	327, 583, 667
FaeI	CATG	3 cut(s)	31, 454, 539
FaiI	YATR	5 cut(s)	29, 452, 537, 594, 596
FatI	CATG	3 cut(s)	27, 450, 535
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	8 cut(s)	56, 125, 306, 309, 312, 315, 318, 338
Fsp4HI	GCNGC	8 cut(s)	56, 125, 306, 309, 312, 315, 318, 338
GluI	GCNGC	8 cut(s)	56, 125, 306, 309, 312, 315, 318, 338
HaeIII	GGCC	2 cut(s)	363, 646
HapII	CCGG	4 cut(s)	234, 341, 346, 554
Hin1II	CATG	3 cut(s)	31, 454, 539
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	6 cut(s)	77, 349, 463, 524, 580, 614
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	4 cut(s)	234, 341, 346, 554
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	68, 423
Hpy188I	TCNGA	5 cut(s)	182, 324, 387, 462, 550
Hpy188III	TCNNGA	3 cut(s)	377, 531, 568
Hpy8I	GTNNAC	2 cut(s)	68, 423
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	2 cut(s)	17, 244
HpyCH4V	TGCA	7 cut(s)	4, 141, 150, 299, 305, 493, 604
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 305, 311, 314, 317
HpyF3I	CTNAG	3 cut(s)	179, 289, 321
HpySE526I	ACGT	2 cut(s)	17, 244
Hsp92II	CATG	3 cut(s)	31, 454, 539
Ksp22I	TGATCA	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	5 cut(s)	224, 331, 373, 433, 550
LmnI	GCTCC	3 cut(s)	405, 588, 633
Lsp1109I	GCAGC	8 cut(s)	67, 136, 317, 320, 323, 326, 329, 349
LweI	GCATC	2 cut(s)	378, 480
MabI	ACCWGGT	1 cut(s)	667
MaeII	ACGT	2 cut(s)	17, 244
MalI	GATC	5 cut(s)	226, 333, 375, 435, 552
MboI	GATC	5 cut(s)	224, 331, 373, 433, 550
MboII	GAAGA	3 cut(s)	219, 222, 240
MflI	RGATCY	4 cut(s)	224, 331, 373, 550
MluCI	AATT	3 cut(s)	38, 262, 544
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	7 cut(s)	91, 138, 147, 188, 277, 448, 556
MseI	TTAA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	4 cut(s)	234, 341, 346, 554
MspR9I	CCNGG	4 cut(s)	329, 555, 585, 669
MvaI	CCWGG	3 cut(s)	329, 585, 669
MwoI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 305, 311, 314, 317
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	5 cut(s)	224, 331, 373, 433, 550
NlaIII	CATG	3 cut(s)	31, 454, 539
NlaIV	GGNNCC	4 cut(s)	175, 333, 375, 552
NmeAIII	GCCGAG	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	284
PfeI	GAWTC	5 cut(s)	77, 463, 524, 580, 614
PkrI	GCNGC	8 cut(s)	57, 126, 307, 310, 313, 316, 319, 339
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp1406I	AACGTT	2 cut(s)	17, 244
Psp6I	CCWGG	3 cut(s)	327, 583, 667
PspGI	CCWGG	3 cut(s)	327, 583, 667
PspN4I	GGNNCC	4 cut(s)	175, 333, 375, 552
PspPI	GGNCC	4 cut(s)	162, 343, 362, 565
PsuI	RGATCY	4 cut(s)	224, 331, 373, 550
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
Rsr2I	CGGWCCG	1 cut(s)	343
RsrII	CGGWCCG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	8 cut(s)	56, 125, 306, 309, 312, 315, 318, 338
Sau3AI	GATC	5 cut(s)	224, 331, 373, 433, 550
Sau96I	GGNCC	4 cut(s)	162, 343, 362, 565
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	4 cut(s)	329, 555, 585, 669
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	378, 480
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	3 cut(s)	162, 343, 565
Sse9I	AATT	3 cut(s)	38, 262, 544
SsiI	CCGC	2 cut(s)	198, 335
StyD4I	CCNGG	4 cut(s)	327, 553, 583, 667
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	2 cut(s)	20, 247
TaqI	TCGA	2 cut(s)	239, 617
TasI	AATT	3 cut(s)	38, 262, 544
TfiI	GAWTC	5 cut(s)	77, 463, 524, 580, 614
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	423, 580
TseI	GCWGC	8 cut(s)	55, 124, 305, 308, 311, 314, 317, 337
TspDTI	ATGAA	3 cut(s)	44, 240, 516
TspRI	CASTG	2 cut(s)	423, 580
VpaK11BI	GGWCC	3 cut(s)	162, 343, 565
XapI	RAATTY	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.