Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311091.1

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Reverse (-)

267 .. 896

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ctgaaatgtccacgctgtgattcctcaaacaccaagttctgctactacaacaactacaatctgtcgcagcctcgccacttctgcaagaactgcaagaggtactggaccaaaggtggctccctcagaaacattccaataggcggtggaagcagaaagaacaccaagagatcgtcttcgggttcgaaacgctcttcatcggctactaattcctcatcatcaaccctgtcaagctcagcagctgcagttgcagcggcagcagcagctcagaaccaggatccgcagccggaccggactcggctctacggcccgaaaatggatccagataatccgatgctggatatttctgggagcttcagctcactgttaacatctaatgatcagtttgggtctcttatggagggtctgaatccaaatgggtcggggttgaaactgatgcaaatgggtgagtttggggagaatgtgatggattcatcaggacatgggttgaattcggatccgggtttggaggtccagagcagtgggaatccagggagctatatgggtttgcaaagtggggattcgagctgttggaatgggagcaatgggtggcctgaccttgccatttacacaccaggttcaagttttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

209

Amino Acids

22.18

Weight (kDa)

8.75

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 251, 278
AclWI	GGATC	6 cut(s)	269, 282, 311, 324, 488, 501
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	337
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	140, 313
AgsI	TTSAA	3 cut(s)	427, 487, 618
AjnI	CCWGG	3 cut(s)	270, 526, 610
AluBI	AGCT	7 cut(s)	231, 239, 263, 351, 357, 534, 564
AluI	AGCT	7 cut(s)	231, 239, 263, 351, 357, 534, 564
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	6 cut(s)	269, 282, 311, 324, 488, 501
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	304, 587
ApeKI	GCWGC	8 cut(s)	67, 236, 239, 248, 254, 257, 260, 280
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	4 cut(s)	105, 286, 305, 508
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	105, 286, 508
BamHI	GGATCC	3 cut(s)	274, 316, 493
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	8 cut(s)	79, 226, 248, 260, 266, 269, 272, 292
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	3 cut(s)	272, 528, 612
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	9 cut(s)	68, 237, 240, 249, 252, 255, 258, 261, 281
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	9 cut(s)	69, 238, 241, 250, 253, 256, 259, 262, 282
Bme1390I	CCNGG	4 cut(s)	272, 498, 528, 612
Bme18I	GGWCC	3 cut(s)	105, 286, 508
BmgT120I	GGNCC	4 cut(s)	105, 286, 305, 508
BmiI	GGNNCC	4 cut(s)	118, 276, 318, 495
BmrFI	CCNGG	4 cut(s)	272, 498, 528, 612
BmsI	GCATC	2 cut(s)	321, 423
BpiI	GAAGAC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 313
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	3 cut(s)	272, 528, 612
BseDI	CCNNGG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	140, 313
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	136, 246, 278
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	8 cut(s)	79, 226, 248, 260, 266, 269, 272, 292
BshFI	GGCC	2 cut(s)	306, 589
BsiSI	CCGG	3 cut(s)	284, 289, 497
BslI	CCNNNNNNNGG	2 cut(s)	140, 313
BsmAI	GTCTC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	306, 589
Bso31I	GGTCTC	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	167, 274, 316, 376, 493
Bsp1720I	GCTNAGC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	141, 251, 278
BspANI	GGCC	2 cut(s)	306, 589
BspCNI	CTCAG	3 cut(s)	135, 245, 277
BspLI	GGNNCC	4 cut(s)	118, 276, 318, 495
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	6 cut(s)	269, 282, 311, 324, 488, 501
BspQI	GCTCTTC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	5 cut(s)	167, 274, 316, 376, 493
Bst2UI	CCWGG	3 cut(s)	272, 528, 612
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	122, 232, 264
BstKTI	GATC	5 cut(s)	170, 277, 319, 379, 496
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	5 cut(s)	167, 274, 316, 376, 493
BstMWI	GCNNNNNNNGC	8 cut(s)	81, 90, 147, 245, 248, 254, 257, 260
BstNI	CCWGG	3 cut(s)	272, 528, 612
BstSCI	CCNGG	4 cut(s)	270, 496, 526, 610
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	8 cut(s)	79, 226, 248, 260, 266, 269, 272, 292
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	3 cut(s)	274, 316, 493
BstXI	CCANNNNNNTGG	1 cut(s)	518
BstYI	RGATCY	3 cut(s)	274, 316, 493
BsuRI	GGCC	2 cut(s)	306, 589
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	359, 523
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	105, 286, 305, 508
CpoI	CGGWCCG	1 cut(s)	286
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	286
CviAII	CATG	1 cut(s)	479
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	122, 232, 264
DpnI	GATC	5 cut(s)	169, 276, 318, 378, 495
DpnII	GATC	5 cut(s)	167, 274, 316, 376, 493
DraIII	CACNNNGTG	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	393
Eco47I	GGWCC	3 cut(s)	105, 286, 508
Eco57I	CTGAAG	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	3 cut(s)	270, 526, 610
FaeI	CATG	1 cut(s)	482
FaiI	YATR	4 cut(s)	395, 480, 537, 539
FatI	CATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	9 cut(s)	68, 237, 240, 249, 252, 255, 258, 261, 281
Fsp4HI	GCNGC	9 cut(s)	68, 237, 240, 249, 252, 255, 258, 261, 281
GluI	GCNGC	9 cut(s)	68, 237, 240, 249, 252, 255, 258, 261, 281
HaeIII	GGCC	2 cut(s)	306, 589
HapII	CCGG	3 cut(s)	284, 289, 497
Hin1II	CATG	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	6 cut(s)	20, 292, 406, 467, 523, 557
HpaI	GTTAAC	1 cut(s)	366
HpaII	CCGG	3 cut(s)	284, 289, 497
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	11, 366
Hpy188I	TCNGA	5 cut(s)	125, 267, 330, 405, 493
Hpy188III	TCNNGA	3 cut(s)	320, 474, 511
Hpy8I	GTNNAC	2 cut(s)	11, 366
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	6 cut(s)	84, 93, 242, 248, 436, 547
HpyF10VI	GCNNNNNNNGC	8 cut(s)	81, 90, 147, 245, 248, 254, 257, 260
HpyF3I	CTNAG	3 cut(s)	122, 232, 264
Hsp92II	CATG	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	376
KspAI	GTTAAC	1 cut(s)	366
Kzo9I	GATC	5 cut(s)	167, 274, 316, 376, 493
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	4 cut(s)	122, 348, 531, 576
Lsp1109I	GCAGC	8 cut(s)	79, 226, 248, 260, 266, 269, 272, 292
LweI	GCATC	2 cut(s)	321, 423
MabI	ACCWGGT	1 cut(s)	610
MalI	GATC	5 cut(s)	169, 276, 318, 378, 495
MboI	GATC	5 cut(s)	167, 274, 316, 376, 493
MboII	GAAGA	2 cut(s)	165, 183
MflI	RGATCY	3 cut(s)	274, 316, 493
MluCI	AATT	2 cut(s)	205, 487
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	34, 81, 90, 131, 220, 391, 499
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	239, 251
MspI	CCGG	3 cut(s)	284, 289, 497
MspR9I	CCNGG	4 cut(s)	272, 498, 528, 612
MvaI	CCWGG	3 cut(s)	272, 528, 612
MwoI	GCNNNNNNNGC	8 cut(s)	81, 90, 147, 245, 248, 254, 257, 260
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	5 cut(s)	167, 274, 316, 376, 493
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	4 cut(s)	118, 276, 318, 495
NmeAIII	GCCGAG	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	196
PfeI	GAWTC	5 cut(s)	20, 406, 467, 523, 557
PkrI	GCNGC	9 cut(s)	69, 238, 241, 250, 253, 256, 259, 262, 282
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	3 cut(s)	270, 526, 610
PspGI	CCWGG	3 cut(s)	270, 526, 610
PspN4I	GGNNCC	4 cut(s)	118, 276, 318, 495
PspPI	GGNCC	4 cut(s)	105, 286, 305, 508
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	274, 316, 493
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
Rsr2I	CGGWCCG	1 cut(s)	286
RsrII	CGGWCCG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	9 cut(s)	68, 237, 240, 249, 252, 255, 258, 261, 281
Sau3AI	GATC	5 cut(s)	167, 274, 316, 376, 493
Sau96I	GGNCC	4 cut(s)	105, 286, 305, 508
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	4 cut(s)	272, 498, 528, 612
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	2 cut(s)	321, 423
SfcI	CTRYAG	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	3 cut(s)	105, 286, 508
Sse9I	AATT	2 cut(s)	205, 487
SsiI	CCGC	3 cut(s)	141, 251, 278
StyD4I	CCNGG	4 cut(s)	270, 496, 526, 610
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	182, 560
TasI	AATT	2 cut(s)	205, 487
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	5 cut(s)	20, 406, 467, 523, 557
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	2 cut(s)	366, 523
TseI	GCWGC	8 cut(s)	67, 236, 239, 248, 254, 257, 260, 280
TspDTI	ATGAA	2 cut(s)	183, 459
TspRI	CASTG	2 cut(s)	366, 523
VpaK11BI	GGWCC	3 cut(s)	105, 286, 508
XapI	RAATTY	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.