Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Forward (+)

17769872 .. 17771185

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1195800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCAGGACCCTGCAACTTTTCAGCCCATGAAACCCCAATTTCCAGAGCAAGAGCAGCTGAAATGTCCGCGCTGCGAGTCCTCCAACACCAAGTTTTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCACTTCTGCAAGAACTGCAAGCGGTACTGGACCAAAGGCGGCGCTCTGAGAAACATCCCCGTCGGCGGCGGAAGCAGGAAGAACACGAAGAAATCGTCCTCGTCAGCTTCGAAACGCTCCTCATCGTCACTGTCGAGCTCATCAGCAGCAGCAGTTCAAAACCCGGATCCGCAGCCTGACCGGACCCGGGTCTGTGCCCCGAAAGTCGACCAAGACCGCGGGGTGATGGATATCTCAGGGAGCTTCAGCTCACTCCTGGCTTCAAATGGGCAATTTGGATCGCTTCTGGAGGGTCTGAATCCAAATGGGTCGGGTCTGAAACTGATGCAAATGGGTGATTATGGGGAGAACTTGGATGCTGCAGGTAATGGGTTGGATTCGGATCCGGGTCTGGGTTTGGAGGGCCAGGGCAATGGAAATCCAGAGAGCTATATGGGGTTGCAAAATGGTGATTCTTCAACCTCGAGCTGTTGGAATGGGGGCAATGGGTGGCCTGACCTTGCCATTTATACACCAGGTTCAAGTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

222

Amino Acids

23.6

Weight (kDa)

8.13

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	18 - 74	6.3e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	3 cut(s)	70, 130, 351
AciI	CCGC	9 cut(s)	68, 128, 154, 171, 198, 201, 302, 349, 351
AclWI	GGATC	5 cut(s)	293, 306, 418, 509, 522
AcuI	CTGAAG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	197, 319, 524
AgsI	TTSAA	4 cut(s)	290, 396, 591, 654
AjnI	CCWGG	3 cut(s)	387, 537, 646
AluBI	AGCT	7 cut(s)	58, 239, 270, 375, 381, 561, 600
AluI	AGCT	7 cut(s)	58, 239, 270, 375, 381, 561, 600
Alw21I	GWGCWC	1 cut(s)	272
AlwI	GGATC	5 cut(s)	293, 306, 418, 509, 522
Ama87I	CYCGRG	2 cut(s)	318, 595
AoxI	GGCC	2 cut(s)	535, 623
ApeKI	GCWGC	7 cut(s)	55, 72, 124, 278, 281, 304, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	3 cut(s)	72, 132, 176
AspS9I	GGNCC	4 cut(s)	7, 162, 315, 535
AsuC2I	CCSGG	4 cut(s)	296, 319, 320, 519
AsuHPI	GGTGA	3 cut(s)	367, 479, 593
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	2 cut(s)	318, 595
AvaII	GGWCC	3 cut(s)	7, 162, 315
BaeGI	GKGCMC	1 cut(s)	331
BamHI	GGATCC	2 cut(s)	298, 514
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	7 cut(s)	59, 67, 136, 290, 293, 316, 478
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	3 cut(s)	389, 539, 648
BcnI	CCSGG	4 cut(s)	296, 319, 320, 519
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	485
Bme1390I	CCNGG	7 cut(s)	296, 319, 320, 389, 519, 539, 648
Bme18I	GGWCC	3 cut(s)	7, 162, 315
BmeT110I	CYCGRG	2 cut(s)	318, 595
BmgT120I	GGNCC	4 cut(s)	7, 162, 315, 535
BmiI	GGNNCC	4 cut(s)	9, 300, 317, 516
BmrFI	CCNGG	7 cut(s)	296, 319, 320, 389, 519, 539, 648
BmsI	GCATC	2 cut(s)	447, 478
BoxI	GACNNNNGTC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	242
BpuMI	CCSGG	4 cut(s)	296, 319, 320, 519
BsaBI	GATNNNNATC	2 cut(s)	362, 513
BsaJI	CCNNGG	3 cut(s)	318, 349, 538
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 319, 524
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	550, 622
Bse8I	GATNNNNATC	2 cut(s)	362, 513
BseBI	CCWGG	3 cut(s)	389, 539, 648
BseDI	CCNNGG	3 cut(s)	318, 349, 538
BseGI	GGATG	2 cut(s)	186, 493
BseJI	GATNNNNATC	2 cut(s)	362, 513
BseLI	CCNNNNNNNGG	3 cut(s)	197, 319, 524
BseMI	GCAATG	2 cut(s)	550, 622
BseMII	CTCAG	2 cut(s)	170, 381
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	7 cut(s)	59, 67, 136, 290, 293, 316, 478
Bsh1236I	CGCG	3 cut(s)	70, 130, 351
BshFI	GGCC	2 cut(s)	537, 625
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	318, 595
BsiSI	CCGG	4 cut(s)	296, 313, 319, 518
BslI	CCNNNNNNNGG	3 cut(s)	197, 319, 524
BsnI	GGCC	2 cut(s)	537, 625
BsoBI	CYCGRG	2 cut(s)	318, 595
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	272, 331
Bsp143I	GATC	3 cut(s)	298, 410, 514
BspACI	CCGC	9 cut(s)	68, 128, 154, 171, 198, 201, 302, 349, 351
BspANI	GGCC	2 cut(s)	537, 625
BspCNI	CTCAG	2 cut(s)	171, 380
BspFNI	CGCG	3 cut(s)	70, 130, 351
BspLI	GGNNCC	4 cut(s)	9, 300, 317, 516
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	5 cut(s)	293, 306, 418, 509, 522
BspT104I	TTCGAA	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	550, 622
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	318, 349, 538
BssMI	GATC	3 cut(s)	298, 410, 514
Bst2UI	CCWGG	3 cut(s)	389, 539, 648
Bst4CI	ACNGT	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	179, 367
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	186, 493
BstFNI	CGCG	3 cut(s)	70, 130, 351
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	3 cut(s)	72, 132, 176
BstKTI	GATC	3 cut(s)	301, 413, 517
BstMBI	GATC	3 cut(s)	298, 410, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 138, 147, 204
BstNI	CCWGG	3 cut(s)	389, 539, 648
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	7 cut(s)	294, 317, 318, 387, 517, 537, 646
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	3 cut(s)	70, 130, 351
BstV1I	GCAGC	7 cut(s)	59, 67, 136, 290, 293, 316, 478
BstX2I	RGATCY	2 cut(s)	298, 514
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	2 cut(s)	298, 514
BsuRI	GGCC	2 cut(s)	537, 625
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	186, 493
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	3 cut(s)	72, 132, 176
Cfr13I	GGNCC	4 cut(s)	7, 162, 315, 535
Cfr42I	CCGCGG	1 cut(s)	352
Cfr9I	CCCGGG	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	179, 367
DpnI	GATC	3 cut(s)	300, 412, 516
DpnII	GATC	3 cut(s)	298, 410, 514
EciI	GGCGGA	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	3 cut(s)	7, 162, 315
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	361
Eco88I	CYCGRG	2 cut(s)	318, 595
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	387, 537, 646
EcoRV	GATATC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	1 cut(s)	31
FaiI	YATR	5 cut(s)	29, 474, 564, 566, 642
FatI	CATG	1 cut(s)	27
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	339
FokI	GGATG	2 cut(s)	173, 500
FriOI	GRGCYC	1 cut(s)	272
GlaI	GCGC	3 cut(s)	71, 131, 175
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	537, 625
HapII	CCGG	4 cut(s)	296, 313, 319, 518
HhaI	GCGC	3 cut(s)	72, 132, 176
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	70, 130, 174
HinP1I	GCGC	3 cut(s)	70, 130, 174
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	4 cut(s)	77, 430, 509, 584
HpaII	CCGG	4 cut(s)	296, 313, 319, 518
HphI	GGTGA	3 cut(s)	367, 479, 593
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	180, 429, 450, 514
Hpy188III	TCNNGA	3 cut(s)	44, 419, 554
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	7 cut(s)	4, 14, 141, 150, 460, 494, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 138, 147, 204
HpyF3I	CTNAG	2 cut(s)	179, 367
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	70, 130, 174
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	298, 410, 514
LmnI	GCTCC	2 cut(s)	254, 372
Lsp1109I	GCAGC	7 cut(s)	59, 67, 136, 290, 293, 316, 478
LweI	GCATC	2 cut(s)	447, 478
MabI	ACCWGGT	1 cut(s)	646
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	300, 412, 516
MboI	GATC	3 cut(s)	298, 410, 514
MboII	GAAGA	3 cut(s)	223, 232, 579
MflI	RGATCY	2 cut(s)	298, 514
MhlI	GDGCHC	2 cut(s)	272, 331
MluCI	AATT	2 cut(s)	38, 404
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	108, 486, 584
MnlI	CCTC	7 cut(s)	91, 128, 241, 262, 415, 526, 604
MspA1I	CMGCKG	2 cut(s)	58, 351
MspI	CCGG	4 cut(s)	296, 313, 319, 518
MspR9I	CCNGG	7 cut(s)	296, 319, 320, 389, 519, 539, 648
MvaI	CCWGG	3 cut(s)	389, 539, 648
MvnI	CGCG	3 cut(s)	70, 130, 351
MwoI	GCNNNNNNNGC	4 cut(s)	55, 138, 147, 204
NciI	CCSGG	4 cut(s)	296, 319, 320, 519
NdeII	GATC	3 cut(s)	298, 410, 514
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	4 cut(s)	9, 300, 317, 516
NmuCI	GTSAC	1 cut(s)	258
NspV	TTCGAA	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	3 cut(s)	224, 239, 263
PfeI	GAWTC	3 cut(s)	430, 509, 584
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	387, 537, 646
PspGI	CCWGG	3 cut(s)	387, 537, 646
PspN4I	GGNNCC	4 cut(s)	9, 300, 317, 516
PspPI	GGNCC	4 cut(s)	7, 162, 315, 535
PspPPI	RGGWCCY	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	298, 514
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	272
SacII	CCGCGG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	338
Sau3AI	GATC	3 cut(s)	298, 410, 514
Sau96I	GGNCC	4 cut(s)	7, 162, 315, 535
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	7 cut(s)	296, 319, 320, 389, 519, 539, 648
SduI	GDGCHC	2 cut(s)	272, 331
SexAI	ACCWGGT	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	447, 478
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	595
Sfr303I	CCGCGG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	242
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	3 cut(s)	7, 162, 315
SlaI	CTCGAG	1 cut(s)	595
SmaI	CCCGGG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	38, 404
SsiI	CCGC	9 cut(s)	68, 128, 154, 171, 198, 201, 302, 349, 351
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	7 cut(s)	294, 317, 318, 387, 517, 537, 646
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	242, 266, 339, 596
TasI	AATT	2 cut(s)	38, 404
TauI	GCSGC	3 cut(s)	130, 174, 201
TfiI	GAWTC	3 cut(s)	430, 509, 584
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	7 cut(s)	55, 72, 124, 278, 281, 304, 491
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	44
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	7, 162, 315
XhoI	CTCGAG	1 cut(s)	595
XmaI	CCCGGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.