Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Forward (+)

37975200 .. 37978946

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGACCCTCAGCTTTGTTGCTGCAAATATTTACACCTATCTCCGCCGTATGGAGCTGTGGGAGGTTGCAGATGAATATGGGGTTGAAGAATTTCACGAACACACTGTTCCTCTATCGGATTTGATGGCAAGCAAATTGAGTTTTGCAAAATTGAAGGAAAATCTTCCAATCAAGAATGCGGTGGATTCATCAGGACATGGGTTGGATTCCAATTCGGGTTTGGAGCACCATAGCAATGGGAATCCAGAGAGCTATATGGGTTTGCAAAGTGGTGATTCGAGCTGTTGGAATGGGAGCAATCTATTTGGAGCATATATCCACACTGGACGGGTCATCAACAACTTCCTCACTAGCTCCGAGTCGATCGGAAAAGACCCGGACCCATCGATTCTTCTCGACGACAACGACGTCGTCTCCCCCGACACCTCCATGTCCGCCGCCCCTTCACCGACACCTCCGTCTTCCAAGAATGGATCATCAATTCTTCAATTGTTGCCGACAAGATCACTCGATCCACCCACCCTTGATTTCCTTTGTTCTTTTTCTTTTTTTTGTTTTTTTTTTTTTTTTTCTTTTTTTGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

196

Amino Acids

21.6

Weight (kDa)

4.62

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	410, 460
AatII	GACGTC	1 cut(s)	414
AciI	CCGC	4 cut(s)	46, 182, 438, 441
AclWI	GGATC	2 cut(s)	484, 509
AcsI	RAATTY	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	89, 157, 491
AluBI	AGCT	6 cut(s)	15, 58, 255, 285, 357, 586
AluI	AGCT	6 cut(s)	15, 58, 255, 285, 357, 586
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	484, 509
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	2 cut(s)	93, 165
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	287, 441
AvaII	GGWCC	1 cut(s)	382
BbsI	GAAGAC	2 cut(s)	11, 456
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	121, 394
BceAI	ACGGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	24, 441
BlsI	GCNGC	2 cut(s)	25, 442
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	11, 456
Bpu10I	CCTNAGC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	369
BshVI	ATCGAT	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	366, 476, 506, 514
BspACI	CCGC	4 cut(s)	46, 182, 438, 441
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	484, 509
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	366, 476, 506, 514
BssNI	GRCGYC	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	11
BstKTI	GATC	4 cut(s)	369, 479, 509, 517
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	4 cut(s)	366, 476, 506, 514
BstMCI	CGRYCG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	2 cut(s)	11, 456
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu15I	ATCGAT	1 cut(s)	389
BsuTUI	ATCGAT	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	105, 324
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	389
CviAII	CATG	2 cut(s)	200, 433
CviJI	RGCY	6 cut(s)	15, 58, 255, 285, 357, 586
CviKI_1	RGCY	6 cut(s)	15, 58, 255, 285, 357, 586
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	4 cut(s)	368, 478, 508, 516
DpnII	GATC	4 cut(s)	366, 476, 506, 514
DrdI	GACNNNNNNGTC	2 cut(s)	410, 460
DseDI	GACNNNNNNGTC	2 cut(s)	410, 460
EciI	GGCGGA	2 cut(s)	35, 427
Eco47I	GGWCC	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	2 cut(s)	203, 436
FaiI	YATR	9 cut(s)	53, 81, 201, 234, 258, 260, 316, 318, 434
FatI	CATG	2 cut(s)	199, 432
Fnu4HI	GCNGC	2 cut(s)	24, 441
Fsp4HI	GCNGC	2 cut(s)	24, 441
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	24, 441
HapII	CCGG	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	203, 436
HinfI	GANTC	6 cut(s)	188, 209, 244, 278, 362, 391
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	287, 441
Hpy188I	TCNGA	3 cut(s)	121, 361, 371
Hpy188III	TCNNGA	5 cut(s)	98, 175, 195, 248, 398
Hpy99I	CGWCG	3 cut(s)	404, 413, 416
HpyAV	CCTTC	2 cut(s)	151, 456
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	26, 71, 149, 268
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	203, 436
Kzo9I	GATC	4 cut(s)	366, 476, 506, 514
LmnI	GCTCC	5 cut(s)	55, 226, 297, 311, 362
LpnPI	CCDG	4 cut(s)	180, 261, 312, 393
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	411
MalI	GATC	4 cut(s)	368, 478, 508, 516
MboI	GATC	4 cut(s)	366, 476, 506, 514
MboII	GAAGA	6 cut(s)	16, 101, 158, 386, 456, 479
MfeI	CAATTG	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	92, 137, 152, 214, 483, 491
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	186, 269
MnlI	CCTC	6 cut(s)	20, 58, 123, 359, 439, 468
MroXI	GAANNNNTTC	2 cut(s)	93, 165
MseI	TTAA	1 cut(s)	589
MslI	CAYNNNNRTG	2 cut(s)	237, 431
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	366, 476, 506, 514
NlaIII	CATG	2 cut(s)	203, 436
NlaIV	GGNNCC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	3 cut(s)	405, 408, 420
PctI	GAATGC	1 cut(s)	184
PdmI	GAANNNNTTC	2 cut(s)	93, 165
PfeI	GAWTC	5 cut(s)	188, 209, 244, 278, 391
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	25, 442
Ple19I	CGATCG	1 cut(s)	369
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	413
PvuI	CGATCG	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	237, 431
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	2 cut(s)	24, 441
Sau3AI	GATC	4 cut(s)	366, 476, 506, 514
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	237, 431
Sse9I	AATT	6 cut(s)	92, 137, 152, 214, 483, 491
SsiI	CCGC	4 cut(s)	46, 182, 438, 441
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	5 cut(s)	281, 365, 389, 399, 513
TasI	AATT	6 cut(s)	92, 137, 152, 214, 483, 491
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	5 cut(s)	188, 209, 244, 278, 391
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TscAI	CASTG	2 cut(s)	112, 331
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	17, 90, 180
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	112, 331
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmnI	GAANNNNTTC	2 cut(s)	93, 165
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.