RchiOBHm_Chr2g0142541

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013234
Physical Location & Seq
Reverse (-)
60062160 .. 60064448
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51268

Sequence Viewer

Length: 687 bp
ATGCAAGACCCAACAACGTTCCAATCCATGAAAGCCCAATTCCCAGAGCAAGAGCAGCTGAAATGTCCACGCTGTGATTCCTCAAACACCAAGTTCTGCTACTACAACAACTACAATCTGTCGCAGCCTCGCCACTTCTGCAAGAACTGCAAGAGGTACTGGACCAAAGGTGGTTCCCTCAGAAACATTCCAATAGGCGGTGGAAGCAGAAAGAACACCAAGAGATCGTCTTCGGGTTCGAAACGTTCTTCATCGGCTACTAATTCCTCATCATCAACCCTGTCAAGCTCAGCAGCTGCAGTTGCAGCAGCAGCAGCAGCTCAGAACCAGGATCCGCAGCCGGACCGGACTCGGCTCTACGGCCCGAAAATGGATCCAGATAATCCGATGCTGGATATTTCTGGGAGCTTCAGCTCACTGTTAACATCTAATGATCAGTTTGGGTCTCTTATGGAGGGTCTGAATCCAAATGGGTCGGGGTTGAAACTGATGCAAATGGGTGAGTTTGGGGAGAATGTGATGGATTCATCAGGACATGGGTTGAATTCGGATCCGGGTTTGGAGGTCCAGAGCAGTGGGAATCCAGGGAGCTATATGGGTTTGCAAAGTGGGGATTCGAGCTGTTGGAATGGGAGCAATGGGTGGCCTGACCTTGCCATTTACACACCAGGTTCAAGTTTTCAGTAG

Protein Analysis

228

Amino Acids

24.44

Weight (kDa)

8.19

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 74 8.5e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51700 AT3G21270
fragaria_vesca FvH4_6g32990
malus_domestica MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica Prupe.3G052300_v2.0.a1
pyrus_communis pycom17g18370
rosa_chinensis RchiOBHm_Chr2g0142541
rosa_laevigata RLG00000019965
rosa_multiflora Rmu_co8311091.1_g000001
rosa_roxburghii Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa Rorug02G0373800
rosa_samantha Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana Rw2G034870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 335
AclI AACGTT 2 cut(s) 17, 244
AclWI GGATC 6 cut(s) 326, 339, 368, 381, 545, 558
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 74
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 197, 370
AgsI TTSAA 3 cut(s) 484, 544, 675
AjnI CCWGG 3 cut(s) 327, 583, 667
AluBI AGCT 8 cut(s) 58, 288, 296, 320, 408, 414, 591, 621
AluI AGCT 8 cut(s) 58, 288, 296, 320, 408, 414, 591, 621
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 6 cut(s) 326, 339, 368, 381, 545, 558
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 2 cut(s) 361, 644
ApoI RAATTY 1 cut(s) 544
AspS9I GGNCC 4 cut(s) 162, 343, 362, 565
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 239
AvaII GGWCC 3 cut(s) 162, 343, 565
BamHI GGATCC 3 cut(s) 331, 373, 550
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 514
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 3 cut(s) 329, 585, 669
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 297
BlpI GCTNAGC 1 cut(s) 289
Bme1390I CCNGG 4 cut(s) 329, 555, 585, 669
Bme18I GGWCC 3 cut(s) 162, 343, 565
BmgT120I GGNCC 4 cut(s) 162, 343, 362, 565
BmiI GGNNCC 4 cut(s) 175, 333, 375, 552
BmrFI CCNGG 4 cut(s) 329, 555, 585, 669
BmsI GCATC 2 cut(s) 378, 480
BpiI GAAGAC 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 584
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 370
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 643
BseBI CCWGG 3 cut(s) 329, 585, 669
BseDI CCNNGG 1 cut(s) 584
BseLI CCNNNNNNNGG 2 cut(s) 197, 370
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 3 cut(s) 193, 303, 335
BseNI ACTGG 1 cut(s) 164
BshFI GGCC 2 cut(s) 363, 646
BsiSI CCGG 3 cut(s) 341, 346, 554
BslI CCNNNNNNNGG 2 cut(s) 197, 370
BsmAI GTCTC 1 cut(s) 450
BsnI GGCC 2 cut(s) 363, 646
Bso31I GGTCTC 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 239
Bsp143I GATC 5 cut(s) 224, 331, 373, 433, 550
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 2 cut(s) 198, 335
BspANI GGCC 2 cut(s) 363, 646
BspCNI CTCAG 3 cut(s) 192, 302, 334
BspLI GGNNCC 4 cut(s) 175, 333, 375, 552
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 6 cut(s) 326, 339, 368, 381, 545, 558
BspT104I TTCGAA 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 584
BssMI GATC 5 cut(s) 224, 331, 373, 433, 550
Bst2UI CCWGG 3 cut(s) 329, 585, 669
Bst4CI ACNGT 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 179, 289, 321
BstKTI GATC 5 cut(s) 227, 334, 376, 436, 553
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 5 cut(s) 224, 331, 373, 433, 550
BstMWI GCNNNNNNNGC 9 cut(s) 55, 138, 147, 204, 302, 305, 311, 314, 317
BstNI CCWGG 3 cut(s) 329, 585, 669
BstSCI CCNGG 4 cut(s) 327, 553, 583, 667
BstSFI CTRYAG 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 3 cut(s) 331, 373, 550
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 3 cut(s) 331, 373, 550
BsuRI GGCC 2 cut(s) 363, 646
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 2 cut(s) 416, 580
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 162, 343, 362, 565
CpoI CGGWCCG 1 cut(s) 343
CsiI ACCWGGT 1 cut(s) 667
Csp6I GTAC 1 cut(s) 157
CspI CGGWCCG 1 cut(s) 343
CviAII CATG 2 cut(s) 28, 536
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 179, 289, 321
DpnI GATC 5 cut(s) 226, 333, 375, 435, 552
DpnII GATC 5 cut(s) 224, 331, 373, 433, 550
DraIII CACNNNGTG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 450
Eco47I GGWCC 3 cut(s) 162, 343, 565
Eco57I CTGAAG 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 327, 583, 667
FaeI CATG 2 cut(s) 31, 539
FaiI YATR 5 cut(s) 29, 452, 537, 594, 596
FatI CATG 2 cut(s) 27, 535
FbaI TGATCA 1 cut(s) 433
HaeIII GGCC 2 cut(s) 363, 646
HapII CCGG 3 cut(s) 341, 346, 554
Hin1II CATG 2 cut(s) 31, 539
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 6 cut(s) 77, 349, 463, 524, 580, 614
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 3 cut(s) 341, 346, 554
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 68, 423
Hpy188I TCNGA 5 cut(s) 182, 324, 387, 462, 550
Hpy188III TCNNGA 3 cut(s) 377, 531, 568
Hpy8I GTNNAC 2 cut(s) 68, 423
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4IV ACGT 2 cut(s) 17, 244
HpyCH4V TGCA 7 cut(s) 4, 141, 150, 299, 305, 493, 604
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 138, 147, 204, 302, 305, 311, 314, 317
HpyF3I CTNAG 3 cut(s) 179, 289, 321
HpySE526I ACGT 2 cut(s) 17, 244
Hsp92II CATG 2 cut(s) 31, 539
Ksp22I TGATCA 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 5 cut(s) 224, 331, 373, 433, 550
LmnI GCTCC 3 cut(s) 405, 588, 633
LweI GCATC 2 cut(s) 378, 480
MabI ACCWGGT 1 cut(s) 667
MaeII ACGT 2 cut(s) 17, 244
MalI GATC 5 cut(s) 226, 333, 375, 435, 552
MboI GATC 5 cut(s) 224, 331, 373, 433, 550
MboII GAAGA 2 cut(s) 222, 240
MflI RGATCY 3 cut(s) 331, 373, 550
MluCI AATT 3 cut(s) 38, 262, 544
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 7 cut(s) 91, 138, 147, 188, 277, 448, 556
MseI TTAA 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 58, 296
MspI CCGG 3 cut(s) 341, 346, 554
MspR9I CCNGG 4 cut(s) 329, 555, 585, 669
MvaI CCWGG 3 cut(s) 329, 585, 669
MwoI GCNNNNNNNGC 9 cut(s) 55, 138, 147, 204, 302, 305, 311, 314, 317
NciI CCSGG 1 cut(s) 555
NdeII GATC 5 cut(s) 224, 331, 373, 433, 550
NlaIII CATG 2 cut(s) 31, 539
NlaIV GGNNCC 4 cut(s) 175, 333, 375, 552
NmeAIII GCCGAG 1 cut(s) 331
NspV TTCGAA 1 cut(s) 239
PfeI GAWTC 5 cut(s) 77, 463, 524, 580, 614
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp1406I AACGTT 2 cut(s) 17, 244
Psp6I CCWGG 3 cut(s) 327, 583, 667
PspGI CCWGG 3 cut(s) 327, 583, 667
PspN4I GGNNCC 4 cut(s) 175, 333, 375, 552
PspPI GGNCC 4 cut(s) 162, 343, 362, 565
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 3 cut(s) 331, 373, 550
PvuII CAGCTG 2 cut(s) 58, 296
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
Rsr2I CGGWCCG 1 cut(s) 343
RsrII CGGWCCG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 422
Sau3AI GATC 5 cut(s) 224, 331, 373, 433, 550
Sau96I GGNCC 4 cut(s) 162, 343, 362, 565
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 4 cut(s) 329, 555, 585, 669
SexAI ACCWGGT 1 cut(s) 667
SfaNI GCATC 2 cut(s) 378, 480
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 3 cut(s) 162, 343, 565
Sse9I AATT 3 cut(s) 38, 262, 544
SsiI CCGC 2 cut(s) 198, 335
StyD4I CCNGG 4 cut(s) 327, 553, 583, 667
TaaI ACNGT 1 cut(s) 420
TaiI ACGT 2 cut(s) 20, 247
TaqI TCGA 2 cut(s) 239, 617
TasI AATT 3 cut(s) 38, 262, 544
TfiI GAWTC 5 cut(s) 77, 463, 524, 580, 614
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 2 cut(s) 423, 580
TspDTI ATGAA 3 cut(s) 44, 240, 516
TspRI CASTG 2 cut(s) 423, 580
VpaK11BI GGWCC 3 cut(s) 162, 343, 565
XapI RAATTY 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.