AT3G21270

DNA binding transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013234
Physical Location & Seq
Forward (+)
7474544 .. 7475903
1360 bp
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UTR
Exon/CDS
Intron
AT3G21270.1

Sequence Viewer

Length: 615 bp
ATGCAGGATCCAGCAGCATATTACCAGACGATGATGGCGAAGCAACAACAACAACAACAACCACAGTTTGCAGAGCAAGAACAGTTAAAGTGTCCTCGTTGTGACTCACCAAACACTAAATTCTGTTACTACAACAACTACAATCTCTCACAGCCTCGTCACTTTTGCAAAAGCTGTCGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTTCCCGTCGGTGGTGGTTCTCGTAAGAACGCAACCAAACGATCCACTTCTTCTTCTTCTTCTGCTTCCTCTCCTTCCAACAGTAGCCAAAACAAGAAGACGAAAAACCCGGATCCGGATCCTGATCCACGTAATTCTCAAAAACCGGATTTGGATCCGACCCGGATGCTTTACGGGTTTCCGATCGGTGACCAAGACGTGAAGGGTATGGAGATTGGTGGAAGCTTTAGCTCGTTGTTGGCGAATAATATGCAGCTTGGTCTTGGAGGAGGAGGGATCATGCTTGACGGGTCGGGTTGGGATCATCCGGGTATGGGTTTGGGTTTGAGGAGAACCGAACCGGGTAATAATAATAATAACCCATGGACCGATCTGGCTATGAACAGAGCGGAGAAAAACTGA

Protein Analysis

204

Amino Acids

22.53

Weight (kDa)

9.34

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 27 - 83 7.3e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51700 AT3G21270
fragaria_vesca FvH4_6g32990
malus_domestica MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica Prupe.3G052300_v2.0.a1
pyrus_communis pycom17g18370
rosa_chinensis RchiOBHm_Chr2g0142541
rosa_laevigata RLG00000019965
rosa_multiflora Rmu_co8311091.1_g000001
rosa_roxburghii Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa Rorug02G0373800
rosa_samantha Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana Rw2G034870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 602
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 2 cut(s) 198, 602
AclI AACGTT 1 cut(s) 213
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 3 cut(s) 224, 328, 527
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 4 cut(s) 174, 438, 444, 469
AluI AGCT 4 cut(s) 174, 438, 444, 469
Aor13HI TCCGGA 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 14, 466
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 4 cut(s) 323, 376, 522, 555
AsuHPI GGTGA 2 cut(s) 99, 413
AvaII GGWCC 1 cut(s) 579
BamHI GGATCC 4 cut(s) 7, 325, 331, 367
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 26, 478
BccI CCATC 1 cut(s) 28
BcgI CGANNNNNNTGC 4 cut(s) 361, 395, 445, 479
BcnI CCSGG 4 cut(s) 323, 376, 522, 555
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 3 cut(s) 15, 199, 467
BlsI GCNGC 3 cut(s) 16, 200, 468
Bme1390I CCNGG 4 cut(s) 323, 376, 522, 555
Bme18I GGWCC 1 cut(s) 579
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 4 cut(s) 9, 327, 333, 369
BmrFI CCNGG 4 cut(s) 323, 376, 522, 555
BmsI GCATC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 317
BpuMI CCSGG 4 cut(s) 323, 376, 522, 555
BsaAI YACGTR 1 cut(s) 344
BsaBI GATNNNNATC 3 cut(s) 330, 336, 366
BsaJI CCNNGG 1 cut(s) 575
BsaWI WCCGGW 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 328, 527
Bse1I ACTGG 1 cut(s) 191
Bse8I GATNNNNATC 3 cut(s) 330, 336, 366
BseAI TCCGGA 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 575
BseGI GGATG 2 cut(s) 384, 517
BseJI GATNNNNATC 3 cut(s) 330, 336, 366
BseLI CCNNNNNNNGG 3 cut(s) 224, 328, 527
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 3 cut(s) 495, 498, 556
BseXI GCAGC 2 cut(s) 26, 478
Bsh1285I CGRYCG 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 6 cut(s) 323, 329, 359, 376, 521, 554
BslI CCNNNNNNNGG 3 cut(s) 224, 328, 527
Bsp13I TCCGGA 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 575
BspACI CCGC 2 cut(s) 198, 602
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 4 cut(s) 9, 327, 333, 369
BsrBI CCGCTC 1 cut(s) 602
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 66, 84, 296
BstBAI YACGTR 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 575
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 2 cut(s) 384, 517
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstMCI CGRYCG 1 cut(s) 399
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 321, 374, 520, 553
BstV1I GCAGC 2 cut(s) 26, 478
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 4 cut(s) 7, 325, 331, 367
BstYI RGATCY 4 cut(s) 7, 325, 331, 367
BtgI CCRYGG 1 cut(s) 575
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 384, 517
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 579
CviAII CATG 2 cut(s) 493, 576
CviJI RGCY 7 cut(s) 154, 174, 300, 438, 444, 469, 590
CviKI_1 RGCY 7 cut(s) 154, 174, 300, 438, 444, 469, 590
Eco130I CCWWGG 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 2 cut(s) 496, 579
FaiI YATR 7 cut(s) 19, 422, 464, 494, 527, 577, 593
FatI CATG 2 cut(s) 492, 575
Fnu4HI GCNGC 3 cut(s) 15, 199, 467
FokI GGATG 2 cut(s) 391, 504
Fsp4HI GCNGC 3 cut(s) 15, 199, 467
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 15, 199, 467
HaeII RGCGCY 1 cut(s) 204
HapII CCGG 6 cut(s) 323, 329, 359, 376, 521, 554
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 496, 579
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 1 cut(s) 104
HpaII CCGG 6 cut(s) 323, 329, 359, 376, 521, 554
HphI GGTGA 2 cut(s) 99, 413
Hpy188I TCNGA 2 cut(s) 372, 396
Hpy188III TCNNGA 2 cut(s) 329, 335
Hpy99I CGWCG 2 cut(s) 183, 224
HpyAV CCTTC 2 cut(s) 297, 409
HpyCH4III ACNGT 3 cut(s) 66, 84, 296
HpyCH4IV ACGT 3 cut(s) 213, 343, 411
HpyCH4V TGCA 4 cut(s) 4, 71, 168, 466
HpySE526I ACGT 3 cut(s) 213, 343, 411
Hsp92II CATG 2 cut(s) 496, 579
HspAI GCGC 1 cut(s) 201
Kpn2I TCCGGA 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 26, 478
LweI GCATC 1 cut(s) 369
MaeII ACGT 3 cut(s) 213, 343, 411
MaeIII GTNAC 6 cut(s) 101, 125, 158, 182, 209, 401
MbiI CCGCTC 1 cut(s) 602
MboII GAAGA 5 cut(s) 255, 258, 261, 264, 322
MflI RGATCY 4 cut(s) 7, 325, 331, 367
MluCI AATT 2 cut(s) 119, 346
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 315, 395
MnlI CCTC 7 cut(s) 105, 165, 292, 473, 476, 479, 534
MroI TCCGGA 1 cut(s) 328
MseI TTAA 1 cut(s) 86
MspI CCGG 6 cut(s) 323, 329, 359, 376, 521, 554
MspR9I CCNGG 4 cut(s) 323, 376, 522, 555
NciI CCSGG 4 cut(s) 323, 376, 522, 555
NcoI CCATGG 1 cut(s) 575
NlaIII CATG 2 cut(s) 496, 579
NlaIV GGNNCC 4 cut(s) 9, 327, 333, 369
NmuCI GTSAC 3 cut(s) 101, 158, 401
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 452
PkrI GCNGC 3 cut(s) 16, 200, 468
Ple19I CGATCG 1 cut(s) 399
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 344
Psp1406I AACGTT 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 401
PspN4I GGNNCC 4 cut(s) 9, 327, 333, 369
PspPI GGNCC 1 cut(s) 579
PsuI RGATCY 4 cut(s) 7, 325, 331, 367
PvuI CGATCG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 15, 199, 467
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 4 cut(s) 323, 376, 522, 555
SetI ASST 7 cut(s) 176, 216, 346, 414, 440, 446, 471
SfaNI GCATC 1 cut(s) 369
SinI GGWCC 1 cut(s) 579
Sse9I AATT 2 cut(s) 119, 346
SsiI CCGC 2 cut(s) 198, 602
StyD4I CCNGG 4 cut(s) 321, 374, 520, 553
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 3 cut(s) 66, 84, 296
TaiI ACGT 3 cut(s) 216, 346, 414
TaqII GACCGA 1 cut(s) 596
TasI AATT 2 cut(s) 119, 346
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 3 cut(s) 101, 158, 401
TseI GCWGC 2 cut(s) 14, 466
Tsp45I GTSAC 3 cut(s) 101, 158, 401
TspDTI ATGAA 1 cut(s) 608
TspGWI ACGGA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.