Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013234

Physical Location & Seq

Genomic Coordinates Forward (+)

24750937 .. 24751620

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAAGACCCAACAACGTTCCAACCCATGAAAGCCCAATTCCCAGAGCAAGAGCAGCTGAAATGTCCACGCTGTGATTCCTCAAACACCAAGTTCTGCTACTACAACAACTACAATCTGTCGCAGCCTCGCCACTTCTGCAAGAACTGCAAGAGGTACTGGACCAAAGGTGGTTCCCTCAGAAACATTCCAATAGGCGGTGGAAGCAGAAAGAACACCAAGAGATCTTCTTCGGGTTCGAAACGTTCTTCATCGGCTACTAATTCCTCATCATCAACCCTGTCAAGCTCAGCAGCTGCAGCATCAGCAGCAGCAGCTCAGAACCAGGATCCGCAGCCGGACCGGACTCGGCTCTACGGCCCGAAAATGGATCCAGATAATCCGATGCTGGATATTTCTGGGAGCTTCAGCTCACTGTTAACTTCTAATGATCAGTTTGGGTCTCTTATGGAGGGTCTGAATCCAAATGGGTCGGGTTTGAAACTGATGCAAATGGGTGAGTTTGGGGAGAATGTGGTGGACTCATCAGGACATGGGTTGAATTCGGATCCGGGTTTGGAGGTCCATAGCAGTGGGAATCCAGAGAGCTTTATGGGTTTGCAGAGTGGGGATTCGAGCTGTTGGAATGGGAGCAATGGGTGGCCTGACCTTGCCATTTACACACCAGGTTCAAGTTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

227

Amino Acids

24.4

Weight (kDa)

7.59

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	18 - 74	8.4e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51700 AT3G21270
fragaria_vesca	FvH4_6g32990
malus_domestica	MD09G1195800.v1.1 MD17G1176100.v1.1
prunus_persica	Prupe.3G052300_v2.0.a1
pyrus_communis	pycom17g18370
rosa_chinensis	RchiOBHm_Chr2g0142541
rosa_laevigata	RLG00000019965
rosa_multiflora	Rmu_co8311091.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029420 Rroxscaffold_2G00102540
rosa_rugosa	Rorug02G0373800
rosa_samantha	Rh2AG425100 Rh2BG435000 Rh2CG411700 Rh2DG445000
rosa_wichuraiana	Rw2G034870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	198, 332
AclI	AACGTT	2 cut(s)	17, 244
AclWI	GGATC	6 cut(s)	323, 336, 365, 378, 542, 555
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	197, 367
AgsI	TTSAA	3 cut(s)	481, 541, 672
AjnI	CCWGG	2 cut(s)	324, 664
AluBI	AGCT	8 cut(s)	58, 288, 296, 317, 405, 411, 588, 618
AluI	AGCT	8 cut(s)	58, 288, 296, 317, 405, 411, 588, 618
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	6 cut(s)	323, 336, 365, 378, 542, 555
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	358, 641
ApeKI	GCWGC	9 cut(s)	55, 124, 293, 296, 299, 308, 311, 314, 334
ApoI	RAATTY	1 cut(s)	541
AspS9I	GGNCC	4 cut(s)	162, 340, 359, 562
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	162, 340, 562
BamHI	GGATCC	3 cut(s)	328, 370, 547
BbvI	GCAGC	9 cut(s)	67, 136, 283, 305, 311, 320, 323, 326, 346
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	2 cut(s)	326, 666
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	9 cut(s)	56, 125, 294, 297, 300, 309, 312, 315, 335
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	9 cut(s)	57, 126, 295, 298, 301, 310, 313, 316, 336
Bme1390I	CCNGG	3 cut(s)	326, 552, 666
Bme18I	GGWCC	3 cut(s)	162, 340, 562
BmgT120I	GGNCC	4 cut(s)	162, 340, 359, 562
BmiI	GGNNCC	4 cut(s)	175, 330, 372, 549
BmrFI	CCNGG	3 cut(s)	326, 552, 666
BmsI	GCATC	3 cut(s)	311, 375, 477
Bpu1102I	GCTNAGC	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 367
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	326, 666
BseLI	CCNNNNNNNGG	2 cut(s)	197, 367
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	193, 303, 332
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	9 cut(s)	67, 136, 283, 305, 311, 320, 323, 326, 346
BshFI	GGCC	2 cut(s)	360, 643
BsiSI	CCGG	3 cut(s)	338, 343, 551
BslI	CCNNNNNNNGG	2 cut(s)	197, 367
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	360, 643
Bso31I	GGTCTC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	224, 328, 370, 430, 547
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	198, 332
BspANI	GGCC	2 cut(s)	360, 643
BspCNI	CTCAG	3 cut(s)	192, 302, 331
BspLI	GGNNCC	4 cut(s)	175, 330, 372, 549
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	6 cut(s)	323, 336, 365, 378, 542, 555
BspT104I	TTCGAA	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	5 cut(s)	224, 328, 370, 430, 547
Bst2UI	CCWGG	2 cut(s)	326, 666
Bst4CI	ACNGT	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	179, 289, 318
BstKTI	GATC	5 cut(s)	227, 331, 373, 433, 550
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	224, 328, 370, 430, 547
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 299, 305, 308, 314
BstNI	CCWGG	2 cut(s)	326, 666
BstSCI	CCNGG	3 cut(s)	324, 550, 664
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	9 cut(s)	67, 136, 283, 305, 311, 320, 323, 326, 346
BstX2I	RGATCY	4 cut(s)	224, 328, 370, 547
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	4 cut(s)	224, 328, 370, 547
BsuRI	GGCC	2 cut(s)	360, 643
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	413, 577
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	162, 340, 359, 562
CpoI	CGGWCCG	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	157
CspI	CGGWCCG	1 cut(s)	340
CviAII	CATG	2 cut(s)	28, 533
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	179, 289, 318
DpnI	GATC	5 cut(s)	226, 330, 372, 432, 549
DpnII	GATC	5 cut(s)	224, 328, 370, 430, 547
DraIII	CACNNNGTG	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	162, 340, 562
Eco57I	CTGAAG	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	324, 664
FaeI	CATG	2 cut(s)	31, 536
FaiI	YATR	5 cut(s)	29, 449, 534, 567, 593
FatI	CATG	2 cut(s)	27, 532
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	9 cut(s)	56, 125, 294, 297, 300, 309, 312, 315, 335
Fsp4HI	GCNGC	9 cut(s)	56, 125, 294, 297, 300, 309, 312, 315, 335
GluI	GCNGC	9 cut(s)	56, 125, 294, 297, 300, 309, 312, 315, 335
HaeIII	GGCC	2 cut(s)	360, 643
HapII	CCGG	3 cut(s)	338, 343, 551
Hin1II	CATG	2 cut(s)	31, 536
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	6 cut(s)	77, 346, 460, 521, 577, 611
HpaI	GTTAAC	1 cut(s)	420
HpaII	CCGG	3 cut(s)	338, 343, 551
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	3 cut(s)	68, 420, 520
Hpy188I	TCNGA	5 cut(s)	182, 321, 384, 459, 547
Hpy188III	TCNNGA	3 cut(s)	374, 528, 581
Hpy8I	GTNNAC	3 cut(s)	68, 420, 520
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	2 cut(s)	17, 244
HpyCH4V	TGCA	6 cut(s)	4, 141, 150, 299, 490, 601
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 299, 305, 308, 314
HpyF3I	CTNAG	3 cut(s)	179, 289, 318
HpySE526I	ACGT	2 cut(s)	17, 244
Hsp92II	CATG	2 cut(s)	31, 536
Ksp22I	TGATCA	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	420
Kzo9I	GATC	5 cut(s)	224, 328, 370, 430, 547
LmnI	GCTCC	2 cut(s)	402, 630
Lsp1109I	GCAGC	9 cut(s)	67, 136, 283, 305, 311, 320, 323, 326, 346
LweI	GCATC	3 cut(s)	311, 375, 477
MabI	ACCWGGT	1 cut(s)	664
MaeII	ACGT	2 cut(s)	17, 244
MalI	GATC	5 cut(s)	226, 330, 372, 432, 549
MboI	GATC	5 cut(s)	224, 328, 370, 430, 547
MboII	GAAGA	3 cut(s)	219, 222, 240
MflI	RGATCY	4 cut(s)	224, 328, 370, 547
MluCI	AATT	3 cut(s)	38, 262, 541
MlyI	GAGTC	2 cut(s)	340, 515
MmeI	TCCRAC	2 cut(s)	46, 602
MnlI	CCTC	7 cut(s)	91, 138, 147, 188, 277, 445, 553
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	58, 296
MspI	CCGG	3 cut(s)	338, 343, 551
MspR9I	CCNGG	3 cut(s)	326, 552, 666
MvaI	CCWGG	2 cut(s)	326, 666
MwoI	GCNNNNNNNGC	8 cut(s)	55, 138, 147, 204, 299, 305, 308, 314
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	5 cut(s)	224, 328, 370, 430, 547
NlaIII	CATG	2 cut(s)	31, 536
NlaIV	GGNNCC	4 cut(s)	175, 330, 372, 549
NmeAIII	GCCGAG	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	239
PfeI	GAWTC	4 cut(s)	77, 460, 577, 611
PkrI	GCNGC	9 cut(s)	57, 126, 295, 298, 301, 310, 313, 316, 336
PleI	GAGTC	2 cut(s)	340, 515
PpsI	GAGTC	2 cut(s)	340, 515
Psp1406I	AACGTT	2 cut(s)	17, 244
Psp6I	CCWGG	2 cut(s)	324, 664
PspGI	CCWGG	2 cut(s)	324, 664
PspN4I	GGNNCC	4 cut(s)	175, 330, 372, 549
PspPI	GGNCC	4 cut(s)	162, 340, 359, 562
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	4 cut(s)	224, 328, 370, 547
PvuII	CAGCTG	2 cut(s)	58, 296
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	570
Rsr2I	CGGWCCG	1 cut(s)	340
RsrII	CGGWCCG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	9 cut(s)	56, 125, 294, 297, 300, 309, 312, 315, 335
Sau3AI	GATC	5 cut(s)	224, 328, 370, 430, 547
Sau96I	GGNCC	4 cut(s)	162, 340, 359, 562
SchI	GAGTC	2 cut(s)	340, 515
ScrFI	CCNGG	3 cut(s)	326, 552, 666
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	3 cut(s)	311, 375, 477
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	3 cut(s)	162, 340, 562
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	38, 262, 541
SsiI	CCGC	2 cut(s)	198, 332
StyD4I	CCNGG	3 cut(s)	324, 550, 664
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	2 cut(s)	20, 247
TaqI	TCGA	2 cut(s)	239, 614
TasI	AATT	3 cut(s)	38, 262, 541
TfiI	GAWTC	4 cut(s)	77, 460, 577, 611
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	420, 577
TseI	GCWGC	9 cut(s)	55, 124, 293, 296, 299, 308, 311, 314, 334
TspDTI	ATGAA	2 cut(s)	44, 240
TspRI	CASTG	2 cut(s)	420, 577
VpaK11BI	GGWCC	3 cut(s)	162, 340, 562
XapI	RAATTY	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.