Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

19775923 .. 19777030

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACATTCCATGGAGACGCCGAGTACGCTTCAGAGCCTGATGGTATGAGCAAGTCAGGAGCAATTGGATTGAGCCGTGACAATGTCCCATTCTCTCATGGTCGAGCCATTTTCATCAATCCAGTCCCTTTTAAGCCTAGTTCTACTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTCTATTTCGTCATTAGTCCTCGCCCGAAAAATCCTAATCCCGGTCATGGCCTCGCCTTTATCATCGTCCCCAACGATAGAAACGACTCCGCTTCTGGTTTAGGCTATCTCAGTCTTGTGAACCGGTTTAGCAACGGTAATCCCAAGAACCATCTCTTTGCGGTTGAGTTTGATGTTTTTAAAGACAAGTCTCTTGGCGACATTAACGATAACCATATCGGAATCAACAATAATTCGGTTAATTCAACGGTATCTAAGAAGGCCGGTTATTGGTATCAATCAAAAATCGAAGGAAAAAACCGGTGGTTGTTCAAGGAATTGAAGCTAAGTGGAAACGGATACAGGGCTTGGATTGAGTACGAGAACGGGAAAGTGACAGTCACGATCGGACGTTCACAAGAAAAACCGAAGAGGCCATTGATCGAAGCACGAGTCGATCTTTCTAAGGTTTTTCTCGAGAAAATGTATGTCGGTTTTGCCGGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTTGGACTGGAGTTTTGAGAACAGTGCCAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

242

Amino Acids

27.01

Weight (kDa)

9.34

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	14 - 239	8.5e-60	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	267, 338
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	2 cut(s)	18, 675
AfaI	GTAC	2 cut(s)	26, 536
AfiI	CCNNNNNNNGG	3 cut(s)	218, 224, 447
AgeI	ACCGGT	2 cut(s)	300, 477
AgsI	TTSAA	5 cut(s)	169, 423, 490, 499, 663
AhdI	GACNNNNNGTC	1 cut(s)	674
AjiI	CACGTC	1 cut(s)	671
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw26I	GTCTC	2 cut(s)	9, 372
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	226, 438, 590
ArsI	GACNNNNNNTTYG	4 cut(s)	594, 626, 689, 721
AsiGI	ACCGGT	2 cut(s)	300, 477
AsuC2I	CCSGG	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	632
BauI	CACGAG	2 cut(s)	606, 686
BccI	CCATC	2 cut(s)	35, 336
BceAI	ACGGC	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	509
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	9, 372
BfaI	CTAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	509
BglII	AGATCT	1 cut(s)	690
Bme1390I	CCNGG	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	671
BmrFI	CCNGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	721
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	18, 675
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	2 cut(s)	300, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 224, 447
Bse118I	RCCGGY	4 cut(s)	300, 440, 477, 656
Bse1I	ACTGG	2 cut(s)	122, 704
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	218, 224, 447
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	122, 704
Bsh1285I	CGRYCG	1 cut(s)	564
BshFI	GGCC	3 cut(s)	228, 440, 592
BshTI	ACCGGT	2 cut(s)	300, 477
BsiEI	CGRYCG	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	5 cut(s)	219, 301, 441, 478, 657
BslFI	GGGAC	4 cut(s)	71, 110, 230, 681
BslI	CCNNNNNNNGG	3 cut(s)	218, 224, 447
BsmAI	GTCTC	2 cut(s)	9, 372
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	4 cut(s)	71, 110, 230, 681
BsnI	GGCC	3 cut(s)	228, 440, 592
BsoBI	CYCGRG	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	561, 597, 613, 690
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	2 cut(s)	267, 338
BspANI	GGCC	3 cut(s)	228, 440, 592
BspCNI	CTCAG	1 cut(s)	300
BsrFI	RCCGGY	4 cut(s)	300, 440, 477, 656
BsrI	ACTGG	2 cut(s)	122, 704
BssAI	RCCGGY	4 cut(s)	300, 440, 477, 656
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	561, 597, 613, 690
BssNI	GRCGYC	2 cut(s)	18, 675
BssSI	CACGAG	2 cut(s)	606, 686
BssT1I	CCWWGG	1 cut(s)	10
Bst2BI	CACGAG	2 cut(s)	606, 686
Bst4CI	ACNGT	4 cut(s)	314, 427, 556, 716
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	2 cut(s)	18, 675
BstDEI	CTNAG	4 cut(s)	287, 432, 503, 621
BstDSI	CCRYGG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	564, 600, 616, 693
BstMAI	GTCTC	2 cut(s)	9, 372
BstMBI	GATC	4 cut(s)	561, 597, 613, 690
BstMCI	CGRYCG	1 cut(s)	564
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	228, 440, 592
BtgI	CCRYGG	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	671
BtsIMutI	CAGTG	1 cut(s)	721
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr10I	RCCGGY	4 cut(s)	300, 440, 477, 656
CseI	GACGC	3 cut(s)	26, 664, 671
Csp6I	GTAC	2 cut(s)	25, 535
CspAI	ACCGGT	2 cut(s)	300, 477
CviAII	CATG	3 cut(s)	11, 98, 224
CviQI	GTAC	2 cut(s)	25, 535
DdeI	CTNAG	4 cut(s)	287, 432, 503, 621
DpnI	GATC	4 cut(s)	563, 599, 615, 692
DpnII	GATC	4 cut(s)	561, 597, 613, 690
DraI	TTTAAA	1 cut(s)	358
DriI	GACNNNNNGTC	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	581
Eam1105I	GACNNNNNGTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	3 cut(s)	14, 101, 227
FaiI	YATR	6 cut(s)	12, 47, 99, 225, 393, 645
FaqI	GGGAC	4 cut(s)	71, 110, 230, 681
FatI	CATG	3 cut(s)	10, 97, 223
FblI	GTMKAC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	3 cut(s)	228, 440, 592
HapII	CCGG	5 cut(s)	219, 301, 441, 478, 657
HgaI	GACGC	3 cut(s)	26, 664, 671
Hin1I	GRCGYC	2 cut(s)	18, 675
Hin1II	CATG	3 cut(s)	14, 101, 227
HinfI	GANTC	3 cut(s)	263, 399, 609
HpaII	CCGG	5 cut(s)	219, 301, 441, 478, 657
Hpy166II	GTNNAC	3 cut(s)	160, 298, 572
Hpy188I	TCNGA	3 cut(s)	34, 398, 566
Hpy188III	TCNNGA	5 cut(s)	57, 559, 632, 634, 686
Hpy8I	GTNNAC	3 cut(s)	160, 298, 572
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	430, 461
HpyCH4III	ACNGT	4 cut(s)	314, 427, 556, 716
HpyCH4IV	ACGT	2 cut(s)	568, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	287, 432, 503, 621
HpySE526I	ACGT	2 cut(s)	568, 670
Hsp92I	GRCGYC	2 cut(s)	18, 675
Hsp92II	CATG	3 cut(s)	14, 101, 227
Kzo9I	GATC	4 cut(s)	561, 597, 613, 690
LmnI	GCTCC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	568, 670
MaeIII	GTNAC	4 cut(s)	77, 550, 556, 683
MalI	GATC	4 cut(s)	563, 599, 615, 692
MboI	GATC	4 cut(s)	561, 597, 613, 690
MboII	GAAGA	2 cut(s)	141, 598
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	4 cut(s)	63, 409, 418, 494
MlyI	GAGTC	2 cut(s)	257, 618
MnlI	CCTC	4 cut(s)	163, 207, 239, 582
MseI	TTAA	4 cut(s)	132, 357, 381, 417
MspI	CCGG	5 cut(s)	219, 301, 441, 478, 657
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	561, 597, 613, 690
NlaIII	CATG	3 cut(s)	14, 101, 227
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	4 cut(s)	77, 550, 556, 683
PaeR7I	CTCGAG	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 258, 684
PfeI	GAWTC	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	83
PinAI	ACCGGT	2 cut(s)	300, 477
Ple19I	CGATCG	1 cut(s)	564
PleI	GAGTC	2 cut(s)	257, 617
PpsI	GAGTC	2 cut(s)	257, 617
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	690
PsyI	GACNNNGTC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	564
RsaI	GTAC	2 cut(s)	26, 536
RsaNI	GTAC	2 cut(s)	25, 535
SaqAI	TTAA	4 cut(s)	132, 357, 381, 417
Sau3AI	GATC	4 cut(s)	561, 597, 613, 690
SchI	GAGTC	2 cut(s)	257, 618
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	4 cut(s)	504, 571, 627, 673
Sfr274I	CTCGAG	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	63, 409, 418, 494
SsiI	CCGC	2 cut(s)	267, 338
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	4 cut(s)	314, 427, 556, 716
TaiI	ACGT	2 cut(s)	571, 673
TaqI	TCGA	6 cut(s)	103, 465, 600, 612, 633, 678
TasI	AATT	4 cut(s)	63, 409, 418, 494
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	4 cut(s)	132, 357, 381, 417
Tru9I	TTAA	4 cut(s)	132, 357, 381, 417
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	4 cut(s)	77, 550, 556, 683
Tsp45I	GTSAC	4 cut(s)	77, 550, 556, 683
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.