Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

12865622 .. 12882815

Gene Structure 17194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGGAAATGATCATATCTTGGGGGTGAAGGAAACCCAAAGGCTACCTGGTCTCTTATATAAAGGCTCATTTCTTCAAAGAATTGGTACAGTACACTTTGAGGCGGCTGAAGTTTTCTTTGTTCTGAAAATTTTAGCTGATAATCAATCACATAGCCCTTGTTCTCTCTTCTGGTGTTTGGTGTTTAAAGACTTGTTTGATCACTCATTCACTCCAAACATGAATTCGTCTGAGGCTGCATCTGATCAAAACAATTGCGGAATTTGCAGGAGTAGCCTGACAAGAGGGCTAAGCGAAGCCATCTTCACTGCCGAGTGCTCGCACGTTTTCCACTACCATTGCATTCTCAAAAATGTCCAGCATGGAAATCTTTGCTGCCCTGTCTGCCAAGCAAAGTGGAATAAGGATAATGTACCTTTCCAGGTTCCCCCTCCTCAGAACAACAACTTGGGCACAATCCCTTGTCACTTCACATTCCCATCACAGCAGCCACCCCATTGGTATCCTCAGTACCCATCCATGCCAAAAGCCGAGTACCCTCCTGAGCCACCTACCTTTTGTGACGATGAACCTCTCCCATCGTGCACCTCATCCATTCAATCCTCTGCCCCTCAGAATATAACAGTCAAGACTCATACAGAGTCCTCTGCTATCTCTTCTGCAGAATCAATCCCAAATTTTCCCGTCCTTGTCAGCATTCTTGCACCGCCCATGCAGGATTCTGAGGGACATGGTCGTACACCCATTGACCTTGTAACAGTTCTAGACGTAAGTGGCAGCATGGAAGGCACAAAGCTTTCCCTTCTCAAGCAAGCTGTCACATTTGTCATAGAAAACTTGGGGCCTTCGGATAGACTTTCTATAGTTTCGTTCTCATCAAGTTCTAGAAGAGTCTTTCCTCTCCAGAGAATGTCTGTTGATGGCCGTGAAAGTGCTGTCCTAGCCATTGAGTCTCTTGGAGCAGGTGGTGCAACTAACATTGCAGAAGGACTGAAGAAAGGAACTAAGGTCCTTGAAGATCGTAGGGAAAGAAACCCAGTTTCCAGTATCATCCTCTTATCTGATGGCATAGATACATACAATAGAACTGCAAACCGACTGTTGAACCAGTTGCCTGATTCAATTCGTTCTAGCAACATGCAACATGAAATCCCAGTCCACACATTTGGATTTGGCTATGACCATGATCCCAACATTATGCATGCTATATCTGATCTGTCAGGCGGCACCTTTTCGTTCATTGAATCAGTTGGAATGATACAAGACTCCTTTGCTCTGTGTATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTAACAGTAAGGTCAGCATCGCCTGGGGTGAAGATTTTAGCAATACCATCAGGGAGACACGTGAATGAGATTTCTGATGAGGGTCAACAAGGAGTTGTTCACGTTGGAAATATGTATGCAGAAGAGGAGAAACAATTTCTGGTCTACCTCTTAGTTCCAGAATCCTCAGGTCCGTATACTAAGATGTCATTGTTAGATGTGTTATGCATGTACAAAGATCTAGCTTCCAATGAACTCATCCAGGTGCAAGGTGCGGAAATAGAGATACTGAGACCCGAGGTTTGTTCCCCTGCTGAAAAGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGAATTTTGGTGGCTGAAGCTATTGCTGAGGCACAAAGGTTGGCTGAGATGGGAAATATTGAGGGTGCACAGGCTCTATTGGCTCAACGGAAAGAAATTCTCTTAACATCTCCAGCATCCCAAGCTGGGGATTATCACAGTAATTTGTTTGAAACTGAGCTTAGAGAAATCATGGATAGAATGGCATCTATGAAGTTGTATGAACAAACCGGGCGTGCTTACGCTCTTGCAGGAATCAGTTCCCATAGGTCACAAAGGGCCAGTGCTAGGGGTGACACAAGAGCCTCCTGTCTCAATTCGGGTTCAGTTGTCTCCAGGAGGAGGGGTCCCCGTAGCCGCAAAAGTACCTACAGTTTTGCTCCAGGTGAGTTGGGTCAACCACCTGCCGCAGTTGGTGCTTTCGAAACACCTGCTATGGTCAGAATGGTAAGAAAATCACAGAATAGAAATCAACCTGGGCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

706

Amino Acids

77.26

Weight (kDa)

6.08

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	84 - 130	8.9e-06	Ring finger domain
zf-RING_11	PF17123	85 - 115	1.5e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	86 - 129	9.2e-06	Zinc finger, C3HC4 type (RING finger)
VWA_CoxE	PF05762	246 - 370	4.3e-07	VWA domain containing CoxE-like protein
VWA	PF00092	250 - 415	7.8e-21	von Willebrand factor type A domain
VWA_3	PF13768	250 - 413	2.8e-18	von Willebrand factor type A domain
VWA_2	PF13519	251 - 356	3.2e-18	von Willebrand factor type A domain
WAV3_C	PF25243	546 - 613	1.6e-06	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint	PF14624	602 - 698	8.7e-10	VWA / Hh protein intein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	953, 2044, 2071
Acc36I	ACCTGC	3 cut(s)	953, 2044, 2071
AccB1I	GGYRCC	1 cut(s)	1226
AccI	GTMKAC	2 cut(s)	1464, 1496
AciI	CCGC	8 cut(s)	104, 258, 707, 1224, 1574, 1648, 1990, 2040
AclWI	GGATC	1 cut(s)	1181
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	6 cut(s)	129, 223, 261, 676, 1656, 1749
AcuI	CTGAAG	3 cut(s)	129, 1013, 1689
AcvI	CACGTG	1 cut(s)	1381
AfaI	GTAC	8 cut(s)	88, 93, 414, 512, 536, 739, 1532, 1999
AfiI	CCNNNNNNNGG	4 cut(s)	1779, 1780, 1920, 1974
AflIII	ACRYGT	1 cut(s)	1378
AgsI	TTSAA	7 cut(s)	77, 599, 1016, 1105, 1122, 1244, 1805
AjnI	CCWGG	7 cut(s)	46, 420, 1342, 1560, 1967, 2014, 2107
AjuI	GAANNNNNNNTTGG	6 cut(s)	208, 240, 431, 463, 1643, 1675
AluBI	AGCT	7 cut(s)	137, 796, 815, 1544, 1673, 1778, 1813
AluI	AGCT	7 cut(s)	137, 796, 815, 1544, 1673, 1778, 1813
Alw21I	GWGCWC	3 cut(s)	320, 587, 1723
Alw26I	GTCTC	6 cut(s)	56, 957, 1369, 1585, 1949, 1969
Alw44I	GTGCAC	2 cut(s)	583, 1719
AlwI	GGATC	1 cut(s)	1181
Ama87I	CYCGRG	1 cut(s)	1595
AoxI	GGCC	4 cut(s)	842, 922, 1911, 2111
ApaLI	GTGCAC	2 cut(s)	583, 1719
ApeKI	GCWGC	5 cut(s)	236, 375, 487, 777, 1645
ApoI	RAATTY	6 cut(s)	129, 223, 261, 676, 1656, 1749
ArsI	GACNNNNNNTTYG	2 cut(s)	1584, 1616
Asp700I	GAANNNNTTC	1 cut(s)	1891
AspS9I	GGNCC	6 cut(s)	842, 1009, 1490, 1911, 1979, 2111
AsuC2I	CCSGG	1 cut(s)	1864
AsuHPI	GGTGA	4 cut(s)	37, 1360, 1937, 2030
AsuII	TTCGAA	1 cut(s)	2055
AvaI	CYCGRG	1 cut(s)	1595
AvaII	GGWCC	3 cut(s)	1009, 1490, 1979
AxyI	CCTNAGG	1 cut(s)	1486
BaeGI	GKGCMC	3 cut(s)	455, 587, 1723
BanI	GGYRCC	1 cut(s)	1226
BbrPI	CACGTG	1 cut(s)	1381
BbsI	GAAGAC	1 cut(s)	1283
Bbv12I	GWGCWC	3 cut(s)	320, 587, 1723
BbvCI	CCTCAGC	1 cut(s)	1680
BbvI	GCAGC	5 cut(s)	223, 362, 499, 789, 1657
BccI	CCATC	8 cut(s)	308, 487, 523, 586, 914, 1058, 1375, 1696
BceAI	ACGGC	1 cut(s)	909
BcgI	CGANNNNNNTGC	2 cut(s)	2045, 2079
BciT130I	CCWGG	7 cut(s)	48, 422, 1344, 1562, 1969, 2016, 2109
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	3 cut(s)	10, 199, 244
BcnI	CCSGG	1 cut(s)	1864
BcoDI	GTCTC	6 cut(s)	56, 957, 1369, 1585, 1949, 1969
BfaI	CTAG	6 cut(s)	764, 885, 941, 1131, 1541, 1920
BfmI	CTRYAG	3 cut(s)	660, 861, 2002
BfuAI	ACCTGC	3 cut(s)	953, 2044, 2071
BfuI	GTATCC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	1537
BisI	GCNGC	9 cut(s)	105, 237, 376, 488, 778, 1225, 1646, 1990, 2040
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	9 cut(s)	106, 238, 377, 489, 779, 1226, 1647, 1991, 2041
Bme1390I	CCNGG	8 cut(s)	48, 422, 1344, 1562, 1864, 1969, 2016, 2109
Bme18I	GGWCC	3 cut(s)	1009, 1490, 1979
BmeT110I	CYCGRG	1 cut(s)	1595
BmgT120I	GGNCC	6 cut(s)	842, 1009, 1490, 1911, 1979, 2111
BmiI	GGNNCC	5 cut(s)	426, 843, 1228, 1980, 1981
BmrFI	CCNGG	8 cut(s)	48, 422, 1344, 1562, 1864, 1969, 2016, 2109
BmrI	ACTGGG	2 cut(s)	1031, 1148
BmsI	GCATC	4 cut(s)	248, 1346, 1778, 1847
BmuI	ACTGGG	2 cut(s)	1031, 1148
BpiI	GAAGAC	1 cut(s)	1283
BpmI	CTGGAG	4 cut(s)	887, 1749, 1951, 1998
Bpu10I	CCTNAGC	3 cut(s)	543, 1308, 1680
Bpu1102I	GCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	2055
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	1864
BsaAI	YACGTR	1 cut(s)	1381
BsaI	GGTCTC	2 cut(s)	56, 1585
BsaJI	CCNNGG	3 cut(s)	1343, 1596, 2108
BsaXI	ACNNNNNCTCC	2 cut(s)	1963, 1993
Bsc4I	CCNNNNNNNGG	4 cut(s)	1779, 1780, 1920, 1974
Bse1I	ACTGG	5 cut(s)	1037, 1044, 1108, 1154, 1914
Bse21I	CCTNAGG	1 cut(s)	1486
Bse3DI	GCAATG	2 cut(s)	337, 978
BseBI	CCWGG	7 cut(s)	48, 422, 1344, 1562, 1969, 2016, 2109
BseDI	CCNNGG	3 cut(s)	1343, 1596, 2108
BseGI	GGATG	5 cut(s)	515, 590, 1050, 1557, 1769
BseLI	CCNNNNNNNGG	4 cut(s)	1779, 1780, 1920, 1974
BseMI	GCAATG	2 cut(s)	337, 978
BseNI	ACTGG	5 cut(s)	1037, 1044, 1108, 1154, 1914
BseRI	GAGGAG	3 cut(s)	423, 1460, 1987
BseSI	GKGCMC	3 cut(s)	455, 587, 1723
BseXI	GCAGC	5 cut(s)	223, 362, 499, 789, 1657
BseYI	CCCAGC	1 cut(s)	1778
BshFI	GGCC	4 cut(s)	844, 924, 1913, 2113
BshNI	GGYRCC	1 cut(s)	1226
BsiHKAI	GWGCWC	3 cut(s)	320, 587, 1723
BsiHKCI	CYCGRG	1 cut(s)	1595
BsiSI	CCGG	1 cut(s)	1863
BslFI	GGGAC	2 cut(s)	741, 1965
BslI	CCNNNNNNNGG	4 cut(s)	1779, 1780, 1920, 1974
BsmAI	GTCTC	6 cut(s)	56, 957, 1369, 1585, 1949, 1969
BsmFI	GGGAC	2 cut(s)	741, 1965
BsmI	GAATGC	2 cut(s)	342, 696
BsnI	GGCC	4 cut(s)	844, 924, 1913, 2113
Bso31I	GGTCTC	2 cut(s)	56, 1585
BsoBI	CYCGRG	1 cut(s)	1595
Bsp119I	TTCGAA	1 cut(s)	2055
Bsp1286I	GDGCHC	4 cut(s)	320, 455, 587, 1723
Bsp1407I	TGTACA	1 cut(s)	1530
Bsp143I	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	8 cut(s)	104, 258, 707, 1224, 1574, 1648, 1990, 2040
BspANI	GGCC	4 cut(s)	844, 924, 1913, 2113
BspLI	GGNNCC	5 cut(s)	426, 843, 1228, 1980, 1981
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	3 cut(s)	953, 2044, 2071
BspPI	GGATC	1 cut(s)	1181
BspT104I	TTCGAA	1 cut(s)	2055
BspT107I	GGYRCC	1 cut(s)	1226
BspTNI	GGTCTC	2 cut(s)	56, 1585
BsrDI	GCAATG	2 cut(s)	337, 978
BsrGI	TGTACA	1 cut(s)	1530
BsrI	ACTGG	5 cut(s)	1037, 1044, 1108, 1154, 1914
BssECI	CCNNGG	3 cut(s)	1343, 1596, 2108
BssMI	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
BssNAI	GTATAC	1 cut(s)	1497
Bst1107I	GTATAC	1 cut(s)	1497
Bst2UI	CCWGG	7 cut(s)	48, 422, 1344, 1562, 1969, 2016, 2109
Bst4CI	ACNGT	7 cut(s)	91, 625, 760, 1101, 1327, 1793, 2006
Bst6I	CTCTTC	4 cut(s)	173, 661, 883, 1437
BstAPI	GCANNNNNTGC	2 cut(s)	968, 2048
BstAUI	TGTACA	1 cut(s)	1530
BstBAI	YACGTR	1 cut(s)	1381
BstBI	TTCGAA	1 cut(s)	2055
BstC8I	GCNNGC	4 cut(s)	320, 813, 1203, 1869
BstF5I	GGATG	5 cut(s)	515, 590, 1050, 1557, 1769
BstKTI	GATC	8 cut(s)	13, 202, 247, 1021, 1189, 1216, 1540, 1642
BstMAI	GTCTC	6 cut(s)	56, 957, 1369, 1585, 1949, 1969
BstMBI	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
BstNI	CCWGG	7 cut(s)	48, 422, 1344, 1562, 1969, 2016, 2109
BstNSI	RCATGY	3 cut(s)	1141, 1205, 1531
BstSCI	CCNGG	8 cut(s)	46, 420, 1342, 1560, 1862, 1967, 2014, 2107
BstSFI	CTRYAG	3 cut(s)	660, 861, 2002
BstSLI	GKGCMC	3 cut(s)	455, 587, 1723
BstV1I	GCAGC	5 cut(s)	223, 362, 499, 789, 1657
BstV2I	GAAGAC	1 cut(s)	1283
BstX2I	RGATCY	1 cut(s)	1537
BstXI	CCANNNNNNTGG	2 cut(s)	498, 1166
BstYI	RGATCY	1 cut(s)	1537
BstZ17I	GTATAC	1 cut(s)	1497
Bsu36I	CCTNAGG	1 cut(s)	1486
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	4 cut(s)	844, 924, 1913, 2113
BtgZI	GCGATG	1 cut(s)	1323
BtsCI	GGATG	5 cut(s)	515, 590, 1050, 1557, 1769
BtsI	GCAGTG	2 cut(s)	306, 1629
BtsIMutI	CAGTG	4 cut(s)	306, 1303, 1629, 1921
BveI	ACCTGC	3 cut(s)	953, 2044, 2071
Cac8I	GCNNGC	4 cut(s)	320, 813, 1203, 1869
Cfr13I	GGNCC	6 cut(s)	842, 1009, 1490, 1911, 1979, 2111
CsiI	ACCWGGT	1 cut(s)	46
Csp6I	GTAC	8 cut(s)	87, 92, 413, 511, 535, 738, 1531, 1998
CspCI	CAANNNNNGTGG	4 cut(s)	320, 355, 377, 412
CviQI	GTAC	8 cut(s)	87, 92, 413, 511, 535, 738, 1531, 1998
DpnI	GATC	8 cut(s)	12, 201, 246, 1020, 1188, 1215, 1539, 1641
DpnII	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	4 cut(s)	173, 661, 883, 1437
EarI	CTCTTC	4 cut(s)	173, 661, 883, 1437
Eco31I	GGTCTC	2 cut(s)	56, 1585
Eco47I	GGWCC	3 cut(s)	1009, 1490, 1979
Eco57I	CTGAAG	3 cut(s)	129, 1013, 1689
Eco72I	CACGTG	1 cut(s)	1381
Eco81I	CCTNAGG	1 cut(s)	1486
Eco88I	CYCGRG	1 cut(s)	1595
EcoO109I	RGGNCCY	3 cut(s)	842, 1009, 1979
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	7 cut(s)	46, 420, 1342, 1560, 1967, 2014, 2107
EcoT22I	ATGCAT	2 cut(s)	1203, 1529
FaqI	GGGAC	2 cut(s)	741, 1965
FbaI	TGATCA	3 cut(s)	10, 199, 244
FblI	GTMKAC	2 cut(s)	1464, 1496
Fnu4HI	GCNGC	9 cut(s)	105, 237, 376, 488, 778, 1225, 1646, 1990, 2040
FokI	GGATG	5 cut(s)	502, 577, 1037, 1544, 1756
Fsp4HI	GCNGC	9 cut(s)	105, 237, 376, 488, 778, 1225, 1646, 1990, 2040
FspBI	CTAG	6 cut(s)	764, 885, 941, 1131, 1541, 1920
GluI	GCNGC	9 cut(s)	105, 237, 376, 488, 778, 1225, 1646, 1990, 2040
GsaI	CCCAGC	1 cut(s)	1782
GsuI	CTGGAG	4 cut(s)	887, 1749, 1951, 1998
HaeIII	GGCC	4 cut(s)	844, 924, 1913, 2113
HapII	CCGG	1 cut(s)	1863
HincII	GTYRAC	2 cut(s)	1406, 2030
HindII	GTYRAC	2 cut(s)	1406, 2030
HindIII	AAGCTT	1 cut(s)	794
HpaII	CCGG	1 cut(s)	1863
HphI	GGTGA	4 cut(s)	37, 1360, 1937, 2030
Hpy188III	TCNNGA	7 cut(s)	542, 628, 764, 885, 904, 1310, 1478
HpyAV	CCTTC	5 cut(s)	22, 779, 812, 855, 980
HpyCH4III	ACNGT	7 cut(s)	91, 625, 760, 1101, 1327, 1793, 2006
HpyCH4IV	ACGT	4 cut(s)	324, 768, 1380, 1422
HpySE526I	ACGT	4 cut(s)	324, 768, 1380, 1422
KflI	GGGWCCC	1 cut(s)	1979
Ksp22I	TGATCA	3 cut(s)	10, 199, 244
Kzo9I	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
LmnI	GCTCC	2 cut(s)	959, 2017
Lsp1109I	GCAGC	5 cut(s)	223, 362, 499, 789, 1657
LweI	GCATC	4 cut(s)	248, 1346, 1778, 1847
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	6 cut(s)	764, 885, 941, 1131, 1541, 1920
MaeII	ACGT	4 cut(s)	324, 768, 1380, 1422
MaeIII	GTNAC	6 cut(s)	464, 560, 754, 817, 1902, 1925
MalI	GATC	8 cut(s)	12, 201, 246, 1020, 1188, 1215, 1539, 1641
MboI	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	1537
MhlI	GDGCHC	4 cut(s)	320, 455, 587, 1723
MlyI	GAGTC	5 cut(s)	625, 650, 900, 959, 1259
MmeI	TCCRAC	2 cut(s)	1231, 1405
Mph1103I	ATGCAT	2 cut(s)	1203, 1529
MroXI	GAANNNNTTC	1 cut(s)	1891
MseI	TTAA	2 cut(s)	186, 1757
MslI	CAYNNNNRTG	2 cut(s)	1383, 1562
MspA1I	CMGCKG	1 cut(s)	1648
MspI	CCGG	1 cut(s)	1863
MspR9I	CCNGG	8 cut(s)	48, 422, 1344, 1562, 1864, 1969, 2016, 2109
MunI	CAATTG	1 cut(s)	253
Mva1269I	GAATGC	2 cut(s)	342, 696
MvaI	CCWGG	7 cut(s)	48, 422, 1344, 1562, 1969, 2016, 2109
NciI	CCSGG	1 cut(s)	1864
NdeII	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
NlaIV	GGNNCC	5 cut(s)	426, 843, 1228, 1980, 1981
NmeAIII	GCCGAG	2 cut(s)	337, 556
NmuCI	GTSAC	5 cut(s)	464, 560, 817, 1902, 1925
NsiI	ATGCAT	2 cut(s)	1203, 1529
NspI	RCATGY	3 cut(s)	1141, 1205, 1531
NspV	TTCGAA	1 cut(s)	2055
PaeI	GCATGC	1 cut(s)	1205
PaqCI	CACCTGC	3 cut(s)	953, 2044, 2071
PctI	GAATGC	2 cut(s)	342, 696
PdmI	GAANNNNTTC	1 cut(s)	1891
PfeI	GAWTC	6 cut(s)	665, 719, 1118, 1244, 1481, 1887
PflFI	GACNNNGTC	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	1967
PkrI	GCNGC	9 cut(s)	106, 238, 377, 489, 779, 1226, 1647, 1991, 2041
PleI	GAGTC	5 cut(s)	625, 649, 899, 958, 1259
PmaCI	CACGTG	1 cut(s)	1381
PmlI	CACGTG	1 cut(s)	1381
PpsI	GAGTC	5 cut(s)	625, 649, 899, 958, 1259
Ppu21I	YACGTR	1 cut(s)	1381
PpuMI	RGGWCCY	2 cut(s)	1009, 1979
Psp5II	RGGWCCY	2 cut(s)	1009, 1979
Psp6I	CCWGG	7 cut(s)	46, 420, 1342, 1560, 1967, 2014, 2107
PspCI	CACGTG	1 cut(s)	1381
PspFI	CCCAGC	1 cut(s)	1778
PspGI	CCWGG	7 cut(s)	46, 420, 1342, 1560, 1967, 2014, 2107
PspN4I	GGNNCC	5 cut(s)	426, 843, 1228, 1980, 1981
PspPI	GGNCC	6 cut(s)	842, 1009, 1490, 1911, 1979, 2111
PspPPI	RGGWCCY	2 cut(s)	1009, 1979
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	1537
PsyI	GACNNNGTC	1 cut(s)	732
RsaI	GTAC	8 cut(s)	88, 93, 414, 512, 536, 739, 1532, 1999
RsaNI	GTAC	8 cut(s)	87, 92, 413, 511, 535, 738, 1531, 1998
RseI	CAYNNNNRTG	2 cut(s)	1383, 1562
SaqAI	TTAA	2 cut(s)	186, 1757
SatI	GCNGC	9 cut(s)	105, 237, 376, 488, 778, 1225, 1646, 1990, 2040
Sau3AI	GATC	8 cut(s)	10, 199, 244, 1018, 1186, 1213, 1537, 1639
Sau96I	GGNCC	6 cut(s)	842, 1009, 1490, 1911, 1979, 2111
SchI	GAGTC	5 cut(s)	625, 650, 900, 959, 1259
ScrFI	CCNGG	8 cut(s)	48, 422, 1344, 1562, 1864, 1969, 2016, 2109
SduI	GDGCHC	4 cut(s)	320, 455, 587, 1723
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	4 cut(s)	248, 1346, 1778, 1847
SfcI	CTRYAG	3 cut(s)	660, 861, 2002
SfuI	TTCGAA	1 cut(s)	2055
SinI	GGWCC	3 cut(s)	1009, 1490, 1979
SmiMI	CAYNNNNRTG	2 cut(s)	1383, 1562
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SphI	GCATGC	1 cut(s)	1205
SsiI	CCGC	8 cut(s)	104, 258, 707, 1224, 1574, 1648, 1990, 2040
SspI	AATATT	1 cut(s)	1711
SspMI	CTAG	6 cut(s)	764, 885, 941, 1131, 1541, 1920
StyD4I	CCNGG	8 cut(s)	46, 420, 1342, 1560, 1862, 1967, 2014, 2107
TaaI	ACNGT	7 cut(s)	91, 625, 760, 1101, 1327, 1793, 2006
TaiI	ACGT	4 cut(s)	327, 771, 1383, 1425
TaqI	TCGA	1 cut(s)	2055
TatI	WGTACW	2 cut(s)	91, 1530
TauI	GCSGC	4 cut(s)	107, 1227, 1992, 2042
TfiI	GAWTC	6 cut(s)	665, 719, 1118, 1244, 1481, 1887
Tru1I	TTAA	2 cut(s)	186, 1757
Tru9I	TTAA	2 cut(s)	186, 1757
TscAI	CASTG	4 cut(s)	313, 1303, 1629, 1921
TseFI	GTSAC	5 cut(s)	464, 560, 817, 1902, 1925
TseI	GCWGC	5 cut(s)	236, 375, 487, 777, 1645
Tsp45I	GTSAC	5 cut(s)	464, 560, 817, 1902, 1925
TspDTI	ATGAA	7 cut(s)	236, 582, 1161, 1228, 1566, 1859, 1869
TspGWI	ACGGA	2 cut(s)	1482, 1756
TspRI	CASTG	4 cut(s)	313, 1303, 1629, 1921
Tth111I	GACNNNGTC	1 cut(s)	732
VneI	GTGCAC	2 cut(s)	583, 1719
VpaK11BI	GGWCC	3 cut(s)	1009, 1490, 1979
XapI	RAATTY	6 cut(s)	129, 223, 261, 676, 1656, 1749
XbaI	TCTAGA	2 cut(s)	763, 884
XceI	RCATGY	3 cut(s)	1141, 1205, 1531
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	1464, 1496
XmnI	GAANNNNTTC	1 cut(s)	1891
XspI	CTAG	6 cut(s)	764, 885, 941, 1131, 1541, 1920
Zsp2I	ATGCAT	2 cut(s)	1203, 1529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.