Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

19778133 .. 19779447

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAGATCCAAATACTCTGTTTCACCACTCTGTTCTTAGCTATCTTCACCTCTCAAGTCACCACTGCTTACAAATTCAAATTCGATTACTTTGGTAACGGCACCGATCCAATATCATTCCATGGAGACGCTGAGTATGGTCCTGACACTGATGGCAAGAGCCGGTCCGGAGCCATCGCATTGACTCGAGACAACATTCCTTTCTCTCATGGTCGAGCCATTTTCACCACTCCAATCACTTTCAAGCCTAATGCTTCAGCTCTTTACCCTTTTAAAACCTCTTTCACTTTCTCCATTACTCCTAAAACAAACCCTAATCAAGGTCATGGCCTTGCTTTCATCGTCGTCCCAAGTAACCAAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTCTGAACCGAACCAATAACGGTAATCCTAATAACCACCTCTTTGCCGTTGAGTTCGATGTCTTTCAAGACAAATCTCTTGGCGACATGAACGATAACCATGTCGGAATCGATATTAATTCGGTTGATTCGGTGGTTTCTGTGAAATCCGGTTATTGGGTTATGACAAGAAGCGGTTGGTTATTTAAGGATTTGAAGCTAAGTAGTGGAGATAGATACAAGGCTTGGATTGAGTACAACAACAATTATAAAGTAGTCTCTGTTACGATTGGTTTAGCGCATTTGAAGAAACCGAACCGGCCATTGATTGAAGCAAAATTCGATCTTTCCAAGGTCATACACGAGGTAATGTATACCGGTTTTGCTGGTTCGATGGGTCGTGGTGTCGAGCGTCACGAGATTTGGGACTGGACTTTCCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

272

Amino Acids

30.38

Weight (kDa)

8.49

Isoelectric Point (pI)

14.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	25 - 271	3.9e-66	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	746
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	3 cut(s)	74, 80, 710
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	320, 549
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	6 cut(s)	79, 244, 461, 589, 679, 704
AluBI	AGCT	3 cut(s)	41, 260, 592
AluI	AGCT	3 cut(s)	41, 260, 592
Alw26I	GTCTC	3 cut(s)	120, 183, 655
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	186
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	2 cut(s)	328, 692
ApoI	RAATTY	3 cut(s)	74, 80, 710
AseI	ATTAAT	1 cut(s)	510
AsiGI	ACCGGT	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	140, 165
AsuHPI	GGTGA	4 cut(s)	16, 40, 52, 217
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	140, 165
BanI	GGYRCC	1 cut(s)	101
BauI	CACGAG	2 cut(s)	734, 788
BbsI	GAAGAC	1 cut(s)	386
BccI	CCATC	3 cut(s)	146, 182, 760
BceAI	ACGGC	2 cut(s)	115, 425
BcoDI	GTCTC	3 cut(s)	120, 183, 655
Bme18I	GGWCC	2 cut(s)	140, 165
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	140, 165
BmiI	GGNNCC	3 cut(s)	103, 172, 373
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	121, 723
BsaWI	WCCGGW	4 cut(s)	167, 374, 542, 749
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 549
Bse118I	RCCGGY	4 cut(s)	162, 368, 690, 749
Bse1I	ACTGG	1 cut(s)	806
BseAI	TCCGGA	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	121, 723
BseLI	CCNNNNNNNGG	2 cut(s)	320, 549
BseMII	CTCAG	2 cut(s)	123, 403
BseNI	ACTGG	1 cut(s)	806
BshFI	GGCC	2 cut(s)	330, 694
BshNI	GGYRCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	749
BshVI	ATCGAT	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	7 cut(s)	163, 168, 369, 375, 543, 691, 750
BslFI	GGGAC	2 cut(s)	332, 812
BslI	CCNNNNNNNGG	2 cut(s)	320, 549
BsmAI	GTCTC	3 cut(s)	120, 183, 655
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	332, 812
BsnI	GGCC	2 cut(s)	330, 694
BsoBI	CYCGRG	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	6, 106, 715
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	330, 694
BspCNI	CTCAG	2 cut(s)	124, 402
BspDI	ATCGAT	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	103, 172, 373
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	4 cut(s)	162, 368, 690, 749
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	4 cut(s)	162, 368, 690, 749
BssECI	CCNNGG	2 cut(s)	121, 723
BssMI	GATC	3 cut(s)	6, 106, 715
BssNAI	GTATAC	1 cut(s)	747
BssNI	GRCGYC	1 cut(s)	366
BssSI	CACGAG	2 cut(s)	734, 788
BssT1I	CCWWGG	2 cut(s)	121, 723
Bst1107I	GTATAC	1 cut(s)	747
Bst2BI	CACGAG	2 cut(s)	734, 788
Bst4CI	ACNGT	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	37, 132, 389, 593
BstDSI	CCRYGG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	9, 109, 718
BstMAI	GTCTC	3 cut(s)	120, 183, 655
BstMBI	GATC	3 cut(s)	6, 106, 715
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZ17I	GTATAC	1 cut(s)	747
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	330, 694
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 147
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	4 cut(s)	162, 368, 690, 749
Cfr13I	GGNCC	2 cut(s)	140, 165
ClaI	ATCGAT	1 cut(s)	504
CpoI	CGGWCCG	1 cut(s)	165
CseI	GACGC	3 cut(s)	137, 374, 773
Csp6I	GTAC	1 cut(s)	628
CspAI	ACCGGT	1 cut(s)	749
CspI	CGGWCCG	1 cut(s)	165
CviAII	CATG	5 cut(s)	122, 209, 326, 481, 494
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	4 cut(s)	37, 132, 389, 593
DpnI	GATC	3 cut(s)	8, 108, 717
DpnII	GATC	3 cut(s)	6, 106, 715
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	692
Eco130I	CCWWGG	2 cut(s)	121, 723
Eco47I	GGWCC	2 cut(s)	140, 165
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	121, 723
ErhI	CCWWGG	2 cut(s)	121, 723
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	5 cut(s)	125, 212, 329, 484, 497
FaqI	GGGAC	2 cut(s)	332, 812
FatI	CATG	5 cut(s)	121, 208, 325, 480, 493
FblI	GTMKAC	1 cut(s)	746
GlaI	GCGC	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	330, 694
HapII	CCGG	7 cut(s)	163, 168, 369, 375, 543, 691, 750
HgaI	GACGC	3 cut(s)	137, 374, 773
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	125, 212, 329, 484, 497
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HinfI	GANTC	3 cut(s)	184, 501, 521
HpaII	CCGG	7 cut(s)	163, 168, 369, 375, 543, 691, 750
HphI	GGTGA	4 cut(s)	16, 40, 52, 217
Hpy166II	GTNNAC	1 cut(s)	747
Hpy188I	TCNGA	2 cut(s)	399, 500
Hpy188III	TCNNGA	6 cut(s)	143, 168, 188, 461, 788, 811
Hpy8I	GTNNAC	1 cut(s)	747
Hpy99I	CGWCG	2 cut(s)	347, 368
HpyCH4III	ACNGT	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	37, 132, 389, 593
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	5 cut(s)	125, 212, 329, 484, 497
HspAI	GCGC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	6, 106, 715
LmnI	GCTCC	1 cut(s)	170
MaeIII	GTNAC	5 cut(s)	58, 95, 353, 655, 785
MalI	GATC	3 cut(s)	8, 108, 717
MboI	GATC	3 cut(s)	6, 106, 715
MboII	GAAGA	4 cut(s)	16, 37, 386, 691
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	6 cut(s)	74, 80, 511, 637, 710, 814
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	4 cut(s)	61, 289, 443, 730
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	4 cut(s)	273, 510, 579, 817
MspI	CCGG	7 cut(s)	163, 168, 369, 375, 543, 691, 750
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	3 cut(s)	6, 106, 715
NlaIII	CATG	5 cut(s)	125, 212, 329, 484, 497
NlaIV	GGNNCC	3 cut(s)	103, 172, 373
NmuCI	GTSAC	2 cut(s)	58, 785
PaeR7I	CTCGAG	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PfeI	GAWTC	2 cut(s)	501, 521
PinAI	ACCGGT	1 cut(s)	749
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	103, 172, 373
PspPI	GGNCC	2 cut(s)	140, 165
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
Rsr2I	CGGWCCG	1 cut(s)	165
RsrII	CGGWCCG	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	273, 510, 579, 817
Sau3AI	GATC	3 cut(s)	6, 106, 715
Sau96I	GGNCC	2 cut(s)	140, 165
SchI	GAGTC	1 cut(s)	178
SetI	ASST	9 cut(s)	43, 53, 262, 281, 325, 435, 594, 729, 741
Sfr274I	CTCGAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	140, 165
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	54, 186
SmoI	CTYRAG	2 cut(s)	54, 186
Sse9I	AATT	6 cut(s)	74, 80, 511, 637, 710, 814
SsiI	CCGC	1 cut(s)	567
StyI	CCWWGG	2 cut(s)	121, 723
TaaI	ACNGT	1 cut(s)	416
TaqI	TCGA	8 cut(s)	84, 187, 214, 450, 504, 714, 764, 780
TasI	AATT	6 cut(s)	74, 80, 511, 637, 710, 814
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	501, 521
Tru1I	TTAA	4 cut(s)	273, 510, 579, 817
Tru9I	TTAA	4 cut(s)	273, 510, 579, 817
TscAI	CASTG	2 cut(s)	70, 154
TseFI	GTSAC	2 cut(s)	58, 785
Tsp45I	GTSAC	2 cut(s)	58, 785
TspDTI	ATGAA	3 cut(s)	17, 328, 497
TspRI	CASTG	2 cut(s)	70, 154
VpaK11BI	GGWCC	2 cut(s)	140, 165
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	3 cut(s)	74, 80, 710
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.