Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

28011047 .. 28012383

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTTTCTCTTCAATTACTTGTGCTATTCCTATCCAAACTTTTTCTGCTTCAATCTACTTTTGCAATTGATTTTGCCTTCAATGGTTTCAATTCTTCTGATATCTTGCTCTATGGCAATGCAACAATAGATTCTGGTGTCCTTTCTCTTACTGAAAATAGCACCTATTCTATTGGTAGAGCTCTCTACAATGCCAAGGTACCCACAAGGTATCCAAACTCCTTAAACCTTCTGCCTTTCACAACCTCTTTCACCTTTTCTATATCTCCAACAAACAAGGATCTTCTCGGGGGCCATGGATTCGTCCTCATTTTTGTCCCTGCTCCTGGTATCCAAGGTGCCTCTGCAGCGCAGTATCTTGGCTTCTTGAACAATACAAACGATGGTAATCCTAGCAACCATGCTTTTGGTATCGAATTTGATGTGTTCCAAGACAAAAAATACAGCGATATTGACAATAATCATGTTGGTGTTGATGTCAATTCTCTAACTTCTCTGGCTTCTTACAAAGCCGGATACTGGTTTGCCGATGACACAAAGGAGGACAGTAACAACACTAGTTGGTCTTTCAAGGAACTAGAGCTGAACGATGGAGCCAATTACCAAGCATGGATTGAGTTCTGGAACAACCAGCTCAGCATCACATTGGCTCCAGAAAACATAAAAAAGCCAGGGAGACCTTTGATTATGGTTCCTCTTGATCTCTCTGATGTTTTCCTTGATGAAATGTACGTGGGGCTCACTGCATCAACCGGAGCAAACAAGCATTCCTCTTCCGTTCATGAAATTCTGGGTGGGTTCGTGTTTGCTTTTTGGAGGGCCACAATTGTTGCCTGGCCCAGAGGCCACAACAAAGACGTGAATGTGCCTGGTAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

294

Amino Acids

32.29

Weight (kDa)

5.03

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 260	5.1e-58	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	199, 338
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	416, 786
AfaI	GTAC	2 cut(s)	201, 731
AfiI	CCNNNNNNNGG	2 cut(s)	326, 519
AgsI	TTSAA	6 cut(s)	14, 53, 82, 91, 370, 571
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	859
AjnI	CCWGG	4 cut(s)	325, 670, 833, 868
AluBI	AGCT	3 cut(s)	182, 583, 634
AluI	AGCT	3 cut(s)	182, 583, 634
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	670
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	292, 819, 836, 844
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	416, 786
Asp718I	GGTACC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	292, 819, 837
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	199, 338
BanII	GRGCYC	2 cut(s)	184, 741
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	2 cut(s)	377, 584
BciT130I	CCWGG	4 cut(s)	327, 672, 835, 870
BciVI	GTATCC	3 cut(s)	222, 341, 509
BcoDI	GTCTC	1 cut(s)	670
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	393, 558, 578
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	3 cut(s)	222, 341, 509
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	4 cut(s)	327, 672, 835, 870
BmeT110I	CYCGRG	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	859
BmgT120I	GGNCC	3 cut(s)	292, 819, 837
BmiI	GGNNCC	6 cut(s)	201, 293, 340, 595, 651, 693
BmrFI	CCNGG	4 cut(s)	327, 672, 835, 870
BmsI	GCATC	2 cut(s)	648, 755
BpmI	CTGGAG	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	4 cut(s)	195, 295, 334, 671
BsaWI	WCCGGW	1 cut(s)	752
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 519
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	4 cut(s)	327, 672, 835, 870
BseDI	CCNNGG	4 cut(s)	195, 295, 334, 671
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	326, 519
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	359
BshFI	GGCC	4 cut(s)	294, 821, 838, 846
BshNI	GGYRCC	2 cut(s)	199, 338
BsiHKAI	GWGCWC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	513, 753
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	326, 519
BsmAI	GTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	294, 821, 838, 846
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	184, 741
Bsp143I	GATC	2 cut(s)	280, 700
Bsp1720I	GCTNAGC	1 cut(s)	635
Bsp19I	CCATGG	1 cut(s)	295
BspANI	GGCC	4 cut(s)	294, 821, 838, 846
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	6 cut(s)	201, 293, 340, 595, 651, 693
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	199, 338
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	4 cut(s)	195, 295, 334, 671
BssMI	GATC	2 cut(s)	280, 700
BssT1I	CCWWGG	3 cut(s)	195, 295, 334
Bst2UI	CCWGG	4 cut(s)	327, 672, 835, 870
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	15, 778
BstBAI	YACGTR	1 cut(s)	733
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	283, 703
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	2 cut(s)	280, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	4 cut(s)	327, 672, 835, 870
BstSCI	CCNGG	4 cut(s)	325, 670, 833, 868
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	3 cut(s)	222, 341, 509
BsuRI	GGCC	4 cut(s)	294, 821, 838, 846
BtgI	CCRYGG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	859
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	292, 819, 837
Csp6I	GTAC	2 cut(s)	200, 730
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviAII	CATG	6 cut(s)	296, 401, 464, 609, 782, 879
CviQI	GTAC	2 cut(s)	200, 730
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	2 cut(s)	282, 702
DpnII	GATC	2 cut(s)	280, 700
Eam1104I	CTCTTC	2 cut(s)	15, 778
EarI	CTCTTC	2 cut(s)	15, 778
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	195, 295, 334
Eco24I	GRGCYC	2 cut(s)	184, 741
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	4 cut(s)	325, 670, 833, 868
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	3 cut(s)	195, 295, 334
EcoT38I	GRGCYC	2 cut(s)	184, 741
ErhI	CCWWGG	3 cut(s)	195, 295, 334
FaeI	CATG	6 cut(s)	299, 404, 467, 612, 785, 882
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	6 cut(s)	295, 400, 463, 608, 781, 878
Fnu4HI	GCNGC	1 cut(s)	348
FriOI	GRGCYC	2 cut(s)	184, 741
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	3 cut(s)	393, 558, 578
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	4 cut(s)	294, 821, 838, 846
HapII	CCGG	2 cut(s)	513, 753
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	299, 404, 467, 612, 785, 882
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	131, 300
HpaII	CCGG	2 cut(s)	513, 753
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	100, 709
Hpy188III	TCNNGA	5 cut(s)	367, 622, 653, 698, 782
HpyAV	CCTTC	2 cut(s)	88, 239
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	2 cut(s)	732, 858
HpyCH4V	TGCA	4 cut(s)	65, 122, 347, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	2 cut(s)	732, 858
Hsp92II	CATG	6 cut(s)	299, 404, 467, 612, 785, 882
HspAI	GCGC	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	280, 700
LmnI	GCTCC	4 cut(s)	328, 593, 655, 755
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	2 cut(s)	648, 755
MaeI	CTAG	3 cut(s)	393, 558, 578
MaeII	ACGT	2 cut(s)	732, 858
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	2 cut(s)	282, 702
MboI	GATC	2 cut(s)	280, 700
MboII	GAAGA	3 cut(s)	87, 275, 765
MfeI	CAATTG	2 cut(s)	66, 825
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	184, 741
MluCI	AATT	8 cut(s)	14, 66, 91, 416, 481, 598, 786, 825
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	8 cut(s)	256, 317, 352, 535, 705, 781, 810, 836
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	2 cut(s)	513, 753
MspR9I	CCNGG	4 cut(s)	327, 672, 835, 870
MunI	CAATTG	2 cut(s)	66, 825
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	4 cut(s)	327, 672, 835, 870
MwoI	GCNNNNNNNGC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	280, 700
NlaIII	CATG	6 cut(s)	299, 404, 467, 612, 785, 882
NlaIV	GGNNCC	6 cut(s)	201, 293, 340, 595, 651, 693
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	131, 300
PkrI	GCNGC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	733
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	4 cut(s)	325, 670, 833, 868
PspGI	CCWGG	4 cut(s)	325, 670, 833, 868
PspN4I	GGNNCC	6 cut(s)	201, 293, 340, 595, 651, 693
PspPI	GGNCC	3 cut(s)	292, 819, 837
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	201, 731
RsaNI	GTAC	2 cut(s)	200, 730
RseI	CAYNNNNRTG	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	280, 700
Sau96I	GGNCC	3 cut(s)	292, 819, 837
ScrFI	CCNGG	4 cut(s)	327, 672, 835, 870
SduI	GDGCHC	2 cut(s)	184, 741
SfaNI	GCATC	2 cut(s)	648, 755
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	468
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	8 cut(s)	14, 66, 91, 416, 481, 598, 786, 825
SspMI	CTAG	3 cut(s)	393, 558, 578
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	325, 670, 833, 868
StyI	CCWWGG	3 cut(s)	195, 295, 334
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	2 cut(s)	735, 861
TaqI	TCGA	1 cut(s)	414
TasI	AATT	8 cut(s)	14, 66, 91, 416, 481, 598, 786, 825
TfiI	GAWTC	2 cut(s)	131, 300
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	738, 770, 798
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	1 cut(s)	748
XapI	RAATTY	2 cut(s)	416, 786
XspI	CTAG	3 cut(s)	393, 558, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.