Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

815610 .. 816670

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAGATTCATAAACTCTGTTTTCTTGCTCTGCTCTTAGCTCACACCACTTCCGCCGTCAACCTCAACCTCAACCTCAAAACCTCAGAGTTGGTCTTCCTTGGAGACGCTGAGCTCGGTCCTGCTTCTGATGGCGTCAGCCGCTCCGGAGCTCTCTCCATGACACGAGACGAGAACCCATTCTCTCACGGCCAAAGTCTTTGGTCCACTCCAGTCCCTTTCAAGCCTTCTTCAAACTCTTCTTCTCCTTATCCATTTGAAACTTCTTTCACTTTCTCCATCTCTACTCGCATCAAACCCGCCCCTGGTCACGGCCTTGCTTTTGTTGTCGTCCCTTCCATTGAAAGTGACGGTCCTGGACCCGCTGGATACCTCGGGATATTCAACAAAACCAACAATGGCAACCCCAAAAACCACATCTTTGCTGTCGAATTCGACGTTTTTCAGGACAAAGGTTTTGGAGACATTAATGATAACCATGTCGGGATTAATATCAACTCTGTTACTTCCGTTGTTGCTGAGAAAGCTGGTTATTGGGTTCAGACAGGAATTGGGAAAATGAAACACTGGTCGTTTAAAGAGTTCAAGCTGAGTAATGGAGAGAGGTACAAGGCTTGGATTGAGTATAGAAACTCCAAGGTTACAGTTACTCTCGCGCCAGAAACCGTTAAGAAACCTAAGAAGCCTTTGATCGTTGCCCATTTAGATCTCTCTAAGGTTTTTCTTCAAAATATGTACCCCGGTTTTTCTGGTGCCATGGGCCGTGGCGTTGAACGTCATGACATTTGGAGTTGGACCTTCCAGAACAGTGCCAAGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

274

Amino Acids

30.16

Weight (kDa)

9.39

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	46 - 270	3.8e-63	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	1 cut(s)	656
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	4 cut(s)	54, 142, 300, 363
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	608, 737
AfiI	CCNNNNNNNGG	2 cut(s)	305, 311
AgsI	TTSAA	8 cut(s)	223, 234, 260, 344, 385, 586, 728, 773
AjnI	CCWGG	2 cut(s)	304, 355
AluBI	AGCT	5 cut(s)	41, 115, 152, 527, 589
AluI	AGCT	5 cut(s)	41, 115, 152, 527, 589
Alw21I	GWGCWC	2 cut(s)	117, 154
Alw26I	GTCTC	3 cut(s)	99, 162, 456
Ama87I	CYCGRG	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	3 cut(s)	190, 313, 760
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	2 cut(s)	468, 489
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	6 cut(s)	119, 204, 353, 359, 760, 795
AsuC2I	CCSGG	1 cut(s)	741
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	5 cut(s)	119, 204, 353, 359, 795
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	2 cut(s)	117, 154
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	117, 154
BccI	CCATC	2 cut(s)	125, 287
BceAI	ACGGC	4 cut(s)	41, 205, 328, 747
BciT130I	CCWGG	2 cut(s)	306, 357
BciVI	GTATCC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	3 cut(s)	99, 162, 456
BfuI	GTATCC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	3 cut(s)	306, 357, 741
Bme18I	GGWCC	5 cut(s)	119, 204, 353, 359, 795
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	6 cut(s)	119, 204, 353, 359, 760, 795
BmiI	GGNNCC	2 cut(s)	361, 754
BmrFI	CCNGG	3 cut(s)	306, 357, 741
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	7 cut(s)	100, 304, 373, 636, 739, 756, 763
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 311
Bse1I	ACTGG	2 cut(s)	212, 572
Bse8I	GATNNNNATC	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	306, 357
BseDI	CCNNGG	7 cut(s)	100, 304, 373, 636, 739, 756, 763
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	305, 311
BseMII	CTCAG	4 cut(s)	99, 102, 510, 581
BseNI	ACTGG	2 cut(s)	212, 572
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	192, 315, 762
BshNI	GGYRCC	1 cut(s)	752
BsiHKAI	GWGCWC	2 cut(s)	117, 154
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	147, 741
BslFI	GGGAC	2 cut(s)	200, 317
BslI	CCNNNNNNNGG	2 cut(s)	305, 311
BsmAI	GTCTC	3 cut(s)	99, 162, 456
BsmBI	CGTCTC	2 cut(s)	99, 162
BsmFI	GGGAC	2 cut(s)	200, 317
BsnI	GGCC	3 cut(s)	192, 315, 762
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	117, 154
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	690, 706
Bsp1720I	GCTNAGC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	4 cut(s)	54, 142, 300, 363
BspANI	GGCC	3 cut(s)	192, 315, 762
BspCNI	CTCAG	4 cut(s)	98, 103, 511, 582
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	656
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	361, 754
BspT107I	GGYRCC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	212, 572
BssECI	CCNNGG	7 cut(s)	100, 304, 373, 636, 739, 756, 763
BssMI	GATC	2 cut(s)	690, 706
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	100, 636, 756
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	306, 357
Bst4CI	ACNGT	4 cut(s)	353, 646, 667, 809
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	135
BstDEI	CTNAG	7 cut(s)	37, 85, 111, 519, 590, 678, 714
BstDSI	CCRYGG	2 cut(s)	756, 763
BstFNI	CGCG	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	2 cut(s)	693, 709
BstMAI	GTCTC	3 cut(s)	99, 162, 456
BstMBI	GATC	2 cut(s)	690, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 524
BstNI	CCWGG	2 cut(s)	306, 357
BstSCI	CCNGG	3 cut(s)	304, 355, 739
BstUI	CGCG	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	192, 315, 762
BtgI	CCRYGG	2 cut(s)	756, 763
BtsIMutI	CAGTG	2 cut(s)	565, 814
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	6 cut(s)	119, 204, 353, 359, 760, 795
CseI	GACGC	2 cut(s)	116, 124
Csp6I	GTAC	2 cut(s)	607, 736
CviAII	CATG	4 cut(s)	160, 479, 757, 779
CviQI	GTAC	2 cut(s)	607, 736
DdeI	CTNAG	7 cut(s)	37, 85, 111, 519, 590, 678, 714
DpnI	GATC	2 cut(s)	692, 708
DpnII	GATC	2 cut(s)	690, 706
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	2 cut(s)	115, 152
Eco130I	CCWWGG	3 cut(s)	100, 636, 756
Eco24I	GRGCYC	2 cut(s)	117, 154
Eco47I	GGWCC	5 cut(s)	119, 204, 353, 359, 795
Eco53kI	GAGCTC	2 cut(s)	115, 152
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	2 cut(s)	115, 152
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	304, 355
EcoT14I	CCWWGG	3 cut(s)	100, 636, 756
EcoT38I	GRGCYC	2 cut(s)	117, 154
ErhI	CCWWGG	3 cut(s)	100, 636, 756
Esp3I	CGTCTC	2 cut(s)	99, 162
FaeI	CATG	4 cut(s)	163, 482, 760, 782
FaiI	YATR	7 cut(s)	12, 161, 480, 627, 734, 758, 780
FaqI	GGGAC	2 cut(s)	200, 317
FatI	CATG	4 cut(s)	159, 478, 756, 778
FauI	CCCGC	2 cut(s)	307, 370
Fnu4HI	GCNGC	1 cut(s)	142
FriOI	GRGCYC	2 cut(s)	117, 154
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	192, 315, 762
HapII	CCGG	2 cut(s)	147, 741
HgaI	GACGC	2 cut(s)	116, 124
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	163, 482, 760, 782
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	7, 819
HpaII	CCGG	2 cut(s)	147, 741
Hpy166II	GTNNAC	2 cut(s)	61, 207
Hpy188I	TCNGA	3 cut(s)	88, 130, 543
Hpy188III	TCNNGA	6 cut(s)	147, 376, 446, 484, 779, 802
Hpy8I	GTNNAC	2 cut(s)	61, 207
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	237, 345, 808
HpyCH4III	ACNGT	4 cut(s)	353, 646, 667, 809
HpyCH4IV	ACGT	2 cut(s)	438, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 524
HpyF3I	CTNAG	7 cut(s)	37, 85, 111, 519, 590, 678, 714
HpySE526I	ACGT	2 cut(s)	438, 775
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	163, 482, 760, 782
HspAI	GCGC	1 cut(s)	656
Kpn2I	TCCGGA	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	690, 706
LmnI	GCTCC	2 cut(s)	149, 149
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	2 cut(s)	438, 775
MaeIII	GTNAC	5 cut(s)	308, 347, 502, 640, 646
MalI	GATC	2 cut(s)	692, 708
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	2 cut(s)	690, 706
MboII	GAAGA	6 cut(s)	16, 88, 222, 231, 234, 716
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	117, 154
MluCI	AATT	2 cut(s)	431, 549
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	6 cut(s)	74, 80, 86, 94, 383, 597
MroI	TCCGGA	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	4 cut(s)	468, 489, 576, 669
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	147, 741
MspR9I	CCNGG	3 cut(s)	306, 357, 741
MvaI	CCWGG	2 cut(s)	306, 357
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	141, 524
NciI	CCSGG	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	2 cut(s)	690, 706
NlaIII	CATG	4 cut(s)	163, 482, 760, 782
NlaIV	GGNNCC	2 cut(s)	361, 754
NmuCI	GTSAC	2 cut(s)	308, 347
PagI	TCATGA	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	7, 819
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	143
PshBI	ATTAAT	2 cut(s)	468, 489
Psp124BI	GAGCTC	2 cut(s)	117, 154
Psp6I	CCWGG	2 cut(s)	304, 355
PspGI	CCWGG	2 cut(s)	304, 355
PspN4I	GGNNCC	2 cut(s)	361, 754
PspPI	GGNCC	6 cut(s)	119, 204, 353, 359, 760, 795
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	2 cut(s)	608, 737
RsaNI	GTAC	2 cut(s)	607, 736
SacI	GAGCTC	2 cut(s)	117, 154
SaqAI	TTAA	4 cut(s)	468, 489, 576, 669
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	690, 706
Sau96I	GGNCC	6 cut(s)	119, 204, 353, 359, 760, 795
ScrFI	CCNGG	3 cut(s)	306, 357, 741
SduI	GDGCHC	2 cut(s)	117, 154
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	5 cut(s)	119, 204, 353, 359, 795
Sse9I	AATT	2 cut(s)	431, 549
SsiI	CCGC	4 cut(s)	54, 142, 300, 363
SstI	GAGCTC	2 cut(s)	117, 154
StyD4I	CCNGG	3 cut(s)	304, 355, 739
StyI	CCWWGG	3 cut(s)	100, 636, 756
TaaI	ACNGT	4 cut(s)	353, 646, 667, 809
TaiI	ACGT	2 cut(s)	441, 778
TaqI	TCGA	2 cut(s)	429, 435
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	431, 549
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	7, 819
Tru1I	TTAA	4 cut(s)	468, 489, 576, 669
Tru9I	TTAA	4 cut(s)	468, 489, 576, 669
TscAI	CASTG	2 cut(s)	572, 814
TseFI	GTSAC	2 cut(s)	308, 347
Tsp45I	GTSAC	2 cut(s)	308, 347
TspDTI	ATGAA	2 cut(s)	17, 575
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	2 cut(s)	572, 814
VpaK11BI	GGWCC	5 cut(s)	119, 204, 353, 359, 795
VspI	ATTAAT	2 cut(s)	468, 489
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.