Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5174402 .. 5175523

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15356.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCAGATTCACAAACTCTGTTTTCTTGCTCTGTTCTTAGCTAATGCAGCTTTTGCCGTCAAATTCAACTTCGATTCCTTCGATGGCAGCAACTTGTTATTCCTTGGAGACGCTGAGCTTGGTCCTTCCTCTGATGGCGTAAGCCGATCCGGAGCTCTTTCCATGACCCGAGACGAAACCCCATTCTCTCATGGTCAGGGTCTTTACATCAATCCAATCCAATTCAAATCTTCAAACACTTCTTCTCCTTTTGATTTTAAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAACCTAATTCTGGTCAAGGCCTTGCCTTCGTCATTGTCCCAGCCGCTGATAACTCCGGCGCTTCCGGCGGAGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGTCAGAAAACAACCTCATATTTATCGAATTCGACACGTTTAAGAACAATGAGTCTAATGACATTAGTGGTAACCATGTCGGAATCAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCTGGTTATTGGGTTCAGACATTAGTCGGAAAAAGAAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTGGAGAGAGGTTCAAGGCTTGGATCGAGTTCAGAAGCAAAGACTCTAGGAATACCATTACCATCGCCCCTGAAAACGTTAAGAAACCGAAGAGGCCTTTGATCCAAGGTTCGAGAGTACTCAATGATGTTCTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGGACGTGCCGGTGAGCGTCACGATGTTTGGAGCTGGTCGTTTGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

271

Amino Acids

29.75

Weight (kDa)

8.91

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 270	2.4e-64	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	2 cut(s)	339, 363
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	3 cut(s)	141, 626, 691
AcsI	RAATTY	2 cut(s)	62, 431
AfaI	GTAC	2 cut(s)	714, 743
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	2 cut(s)	438, 738
AgsI	TTSAA	6 cut(s)	67, 226, 234, 610, 734, 809
AjiI	CACGTC	1 cut(s)	770
AluBI	AGCT	6 cut(s)	41, 50, 118, 155, 527, 798
AluI	AGCT	6 cut(s)	41, 50, 118, 155, 527, 798
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	102, 165
AlwI	GGATC	3 cut(s)	141, 626, 691
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	2 cut(s)	313, 689
ApeKI	GCWGC	2 cut(s)	47, 87
ApoI	RAATTY	2 cut(s)	62, 431
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	59, 99
BccI	CCATC	5 cut(s)	77, 128, 287, 392, 665
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	102, 165
BfaI	CTAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	357
BisI	GCNGC	3 cut(s)	48, 88, 339
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	3 cut(s)	49, 89, 340
BmcAI	AGTACT	1 cut(s)	714
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	760
BoxI	GACNNNNGTC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	103, 700, 762
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	103, 700, 762
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	105, 510
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	59, 99
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	315, 691
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	150, 351, 360, 774
BslFI	GGGAC	2 cut(s)	317, 780
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	102, 165
BsmBI	CGTCTC	2 cut(s)	102, 165
BsmFI	GGGAC	2 cut(s)	317, 780
BsnI	GGCC	2 cut(s)	315, 691
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	146, 618, 696
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	2 cut(s)	339, 363
BspANI	GGCC	2 cut(s)	315, 691
BspCNI	CTCAG	2 cut(s)	106, 511
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	760
BspPI	GGATC	3 cut(s)	141, 626, 691
BsrFI	RCCGGY	1 cut(s)	773
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	103, 700, 762
BssMI	GATC	3 cut(s)	146, 618, 696
BssT1I	CCWWGG	3 cut(s)	103, 700, 762
Bst6I	CTCTTC	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	37, 114, 519, 590
BstDSI	CCRYGG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	149, 621, 699
BstMAI	GTCTC	2 cut(s)	102, 165
BstMBI	GATC	3 cut(s)	146, 618, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 53, 360, 524, 752
BstNSI	RCATGY	1 cut(s)	742
BstPAI	GACNNNNGTC	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	59, 99
BsuRI	GGCC	2 cut(s)	315, 691
BtgI	CCRYGG	1 cut(s)	762
BtgZI	GCGATG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	770
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	2 cut(s)	119, 770
Csp6I	GTAC	2 cut(s)	713, 742
CviAII	CATG	5 cut(s)	163, 191, 479, 739, 763
CviQI	GTAC	2 cut(s)	713, 742
DdeI	CTNAG	4 cut(s)	37, 114, 519, 590
DpnI	GATC	3 cut(s)	148, 620, 698
DpnII	GATC	3 cut(s)	146, 618, 696
DraI	TTTAAA	2 cut(s)	259, 577
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
EciI	GGCGGA	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	3 cut(s)	103, 700, 762
Eco147I	AGGCCT	2 cut(s)	315, 691
Eco24I	GRGCYC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	3 cut(s)	103, 700, 762
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	3 cut(s)	103, 700, 762
Esp3I	CGTCTC	2 cut(s)	102, 165
FaeI	CATG	5 cut(s)	166, 194, 482, 742, 766
FaiI	YATR	6 cut(s)	164, 192, 422, 480, 740, 764
FaqI	GGGAC	2 cut(s)	317, 780
FatI	CATG	5 cut(s)	162, 190, 478, 738, 762
Fnu4HI	GCNGC	3 cut(s)	48, 88, 339
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	3 cut(s)	48, 88, 339
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	3 cut(s)	48, 88, 339
GsaI	CCCAGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	315, 691
HapII	CCGG	4 cut(s)	150, 351, 360, 774
HgaI	GACGC	2 cut(s)	119, 770
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	166, 194, 482, 742, 766
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	7 cut(s)	7, 74, 378, 455, 486, 586, 638
HpaII	CCGG	4 cut(s)	150, 351, 360, 774
HphI	GGTGA	1 cut(s)	788
Hpy188I	TCNGA	7 cut(s)	133, 377, 409, 485, 543, 554, 629
Hpy188III	TCNNGA	3 cut(s)	150, 708, 785
HpyAV	CCTTC	3 cut(s)	88, 135, 331
HpyCH4IV	ACGT	3 cut(s)	440, 672, 769
HpyCH4V	TGCA	2 cut(s)	4, 47
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 53, 360, 524, 752
HpyF3I	CTNAG	4 cut(s)	37, 114, 519, 590
HpySE526I	ACGT	3 cut(s)	440, 672, 769
Hsp92II	CATG	5 cut(s)	166, 194, 482, 742, 766
HspAI	GCGC	1 cut(s)	354
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	146, 618, 696
LmnI	GCTCC	2 cut(s)	152, 795
Lsp1109I	GCAGC	2 cut(s)	59, 99
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	3 cut(s)	440, 672, 769
MaeIII	GTNAC	2 cut(s)	473, 782
MalI	GATC	3 cut(s)	148, 620, 698
MboI	GATC	3 cut(s)	146, 618, 696
MboII	GAAGA	5 cut(s)	222, 234, 697, 719, 722
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	62, 221, 301, 431
MlyI	GAGTC	2 cut(s)	464, 632
MmeI	TCCRAC	2 cut(s)	463, 532
MnlI	CCTC	7 cut(s)	139, 297, 359, 392, 428, 597, 681
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	4 cut(s)	258, 444, 576, 675
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	4 cut(s)	150, 351, 360, 774
MwoI	GCNNNNNNNGC	5 cut(s)	47, 53, 360, 524, 752
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	3 cut(s)	146, 618, 696
NlaIII	CATG	5 cut(s)	166, 194, 482, 742, 766
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	742
PceI	AGGCCT	2 cut(s)	315, 691
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	7, 74, 378, 486, 586
PkrI	GCNGC	3 cut(s)	49, 89, 340
PleI	GAGTC	2 cut(s)	463, 632
PpsI	GAGTC	2 cut(s)	463, 632
PscI	ACATGT	1 cut(s)	738
PshAI	GACNNNNGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	672
PspEI	GGTNACC	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	714, 743
RsaNI	GTAC	2 cut(s)	713, 742
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	258, 444, 576, 675
SatI	GCNGC	3 cut(s)	48, 88, 339
Sau3AI	GATC	3 cut(s)	146, 618, 696
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	714
SchI	GAGTC	2 cut(s)	464, 632
SduI	GDGCHC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	4 cut(s)	62, 221, 301, 431
SseBI	AGGCCT	2 cut(s)	315, 691
SsiI	CCGC	2 cut(s)	339, 363
SspMI	CTAG	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	157
StuI	AGGCCT	2 cut(s)	315, 691
StyI	CCWWGG	3 cut(s)	103, 700, 762
TaiI	ACGT	3 cut(s)	443, 675, 772
TaqI	TCGA	7 cut(s)	72, 81, 429, 435, 500, 621, 707
TasI	AATT	4 cut(s)	62, 221, 301, 431
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	5 cut(s)	7, 74, 378, 486, 586
Tru1I	TTAA	4 cut(s)	258, 444, 576, 675
Tru9I	TTAA	4 cut(s)	258, 444, 576, 675
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	2 cut(s)	47, 87
Tsp45I	GTSAC	1 cut(s)	782
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	62, 431
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	1 cut(s)	642
ZrmI	AGTACT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.