Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

13080346 .. 13081146

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19922.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAGTCTCTTCAATTACTTGTGCTATTCCTATCCCAACTTTTCTTGCTCCAATCTGCTTTTGCAATTGATTTTGCCTTCAATGGTTTCAATTCTTCTGATATCTTGCTCTATGGCAACGCAACAATAGATTCTGGTGTTCTTTCTCTTACTGACAATAGCACTTATTCTATTGGTAGAGCTCTCTACAATGCTAAGGTACCCACAAGGTATCCAAACTCCTTGAACCTTCTGCCTTTCACAACCTCTTTTACGTTTTCTATAGCTCCATACAAGGATCCTCTTGGGGGTCATGGATTCGTCCTCATTTTTGTTCCTGCTTCCGGCATCCAAGGTGCCTCTGCAGGACAGTATCTCGGCTTCTTGAATAATACAAGCGATGGTAACCCTAGCAACCATGCTTTTGGTATCGAGTTTGATGTATTCAAAGACGAAGAATACAGCGATATCGACAACAATCATGTTGGTATTGATGTCAATTCTCTTACTTCTCTGGCTTCTTACAAAGCCGGATATTGGATTGGTGACGACACAAAGGAGGACAGTAACAACACTACTTGGTCTTTCAAGGAAGTAGAGCTGAACGATGGAGCCAATTACCAAGCATGGATTGAGTACTGGAACAACCAGCTGAGCATTACATTGGCTCCAGAAAACATAAAAAAGCCAGGGAGACCTTTGATTAAGGTTCCTCTTGATCTCTCTGATGTTTTCCTTGATGAAATGCACGTGGGGTTCACTGCATCAACTGGAGTGAACGTTCAAAACCACAATATTTTGAGTTGGAGCTTCAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

267

Amino Acids

29.32

Weight (kDa)

4.42

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 265	1.2e-64	Legume lectin domain
Lectin_L-type_dom	PF18483	37 - 258	2.1e-08	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	199, 335
AclI	AACGTT	1 cut(s)	759
AclWI	GGATC	2 cut(s)	272, 285
AcuI	CTGAAG	1 cut(s)	775
AcvI	CACGTG	1 cut(s)	730
AfaI	GTAC	2 cut(s)	201, 617
AfiI	CCNNNNNNNGG	3 cut(s)	287, 323, 516
AgsI	TTSAA	8 cut(s)	14, 82, 91, 226, 367, 427, 568, 764
AjnI	CCWGG	1 cut(s)	667
AloI	GAACNNNNNNTCC	2 cut(s)	744, 776
AluBI	AGCT	5 cut(s)	182, 266, 580, 631, 789
AluI	AGCT	5 cut(s)	182, 266, 580, 631, 789
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	12, 667
AlwI	GGATC	2 cut(s)	272, 285
Asp718I	GGTACC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	2 cut(s)	199, 335
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	2 cut(s)	374, 581
BciT130I	CCWGG	1 cut(s)	669
BciVI	GTATCC	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	12, 667
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	2 cut(s)	261, 342
BfuI	GTATCC	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	1 cut(s)	669
BmiI	GGNNCC	6 cut(s)	201, 279, 337, 592, 648, 690
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	336, 752
BpmI	CTGGAG	2 cut(s)	633, 771
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	667
BsaJI	CCNNGG	2 cut(s)	331, 668
BsaXI	ACNNNNNCTCC	4 cut(s)	631, 661, 744, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 323, 516
Bse1I	ACTGG	2 cut(s)	623, 754
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	331, 668
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	3 cut(s)	287, 323, 516
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	2 cut(s)	623, 754
BshNI	GGYRCC	2 cut(s)	199, 335
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	324, 510
BslI	CCNNNNNNNGG	3 cut(s)	287, 323, 516
BsmAI	GTCTC	2 cut(s)	12, 667
Bso31I	GGTCTC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	277, 697
Bsp1720I	GCTNAGC	1 cut(s)	632
BspCNI	CTCAG	1 cut(s)	624
BspLI	GGNNCC	6 cut(s)	201, 279, 337, 592, 648, 690
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	272, 285
BspT107I	GGYRCC	2 cut(s)	199, 335
BspTNI	GGTCTC	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	623, 754
BssECI	CCNNGG	2 cut(s)	331, 668
BssMI	GATC	2 cut(s)	277, 697
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	351, 545
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	730
BstDEI	CTNAG	2 cut(s)	195, 632
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	280, 700
BstMAI	GTCTC	2 cut(s)	12, 667
BstMBI	GATC	2 cut(s)	277, 697
BstNI	CCWGG	1 cut(s)	669
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	2 cut(s)	261, 342
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
Csp6I	GTAC	2 cut(s)	200, 616
CviAII	CATG	4 cut(s)	293, 398, 461, 606
CviQI	GTAC	2 cut(s)	200, 616
DdeI	CTNAG	2 cut(s)	195, 632
DpnI	GATC	2 cut(s)	279, 699
DpnII	GATC	2 cut(s)	277, 697
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	667
Eco32I	GATATC	2 cut(s)	103, 448
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	775
Eco72I	CACGTG	1 cut(s)	730
Eco91I	GGTNACC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	667
EcoRV	GATATC	2 cut(s)	103, 448
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	296, 401, 464, 609
FaiI	YATR	8 cut(s)	114, 263, 271, 294, 399, 462, 607, 659
FatI	CATG	4 cut(s)	292, 397, 460, 605
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	390
GsuI	CTGGAG	2 cut(s)	633, 771
HapII	CCGG	2 cut(s)	324, 510
Hin1II	CATG	4 cut(s)	296, 401, 464, 609
HinfI	GANTC	2 cut(s)	131, 297
HpaII	CCGG	2 cut(s)	324, 510
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	738, 757
Hpy188I	TCNGA	2 cut(s)	100, 706
Hpy188III	TCNNGA	3 cut(s)	364, 650, 695
Hpy8I	GTNNAC	2 cut(s)	738, 757
HpyAV	CCTTC	2 cut(s)	88, 239
HpyCH4III	ACNGT	2 cut(s)	351, 545
HpyCH4IV	ACGT	3 cut(s)	254, 729, 759
HpyCH4V	TGCA	5 cut(s)	4, 65, 344, 727, 743
HpyF3I	CTNAG	2 cut(s)	195, 632
HpySE526I	ACGT	3 cut(s)	254, 729, 759
Hsp92II	CATG	4 cut(s)	296, 401, 464, 609
KpnI	GGTACC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	277, 697
LmnI	GCTCC	5 cut(s)	54, 271, 590, 652, 786
LweI	GCATC	2 cut(s)	336, 752
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	3 cut(s)	254, 729, 759
MaeIII	GTNAC	3 cut(s)	383, 524, 545
MalI	GATC	2 cut(s)	279, 699
MboI	GATC	2 cut(s)	277, 697
MboII	GAAGA	2 cut(s)	87, 446
MfeI	CAATTG	2 cut(s)	66, 796
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	6 cut(s)	14, 66, 91, 478, 595, 796
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	6 cut(s)	256, 291, 314, 349, 532, 702
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	2 cut(s)	324, 510
MspR9I	CCNGG	1 cut(s)	669
MunI	CAATTG	2 cut(s)	66, 796
MvaI	CCWGG	1 cut(s)	669
NdeII	GATC	2 cut(s)	277, 697
NlaIII	CATG	4 cut(s)	296, 401, 464, 609
NlaIV	GGNNCC	6 cut(s)	201, 279, 337, 592, 648, 690
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	131, 297
PmaCI	CACGTG	1 cut(s)	730
PmlI	CACGTG	1 cut(s)	730
Ppu21I	YACGTR	1 cut(s)	730
Psp124BI	GAGCTC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	667
PspCI	CACGTG	1 cut(s)	730
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	6 cut(s)	201, 279, 337, 592, 648, 690
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	631
RsaI	GTAC	2 cut(s)	201, 617
RsaNI	GTAC	2 cut(s)	200, 616
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	277, 697
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	336, 752
SfcI	CTRYAG	2 cut(s)	261, 342
Sse9I	AATT	6 cut(s)	14, 66, 91, 478, 595, 796
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	351, 545
TaiI	ACGT	3 cut(s)	257, 732, 762
TaqI	TCGA	2 cut(s)	411, 450
TasI	AATT	6 cut(s)	14, 66, 91, 478, 595, 796
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	2 cut(s)	131, 297
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	735
TspRI	CASTG	1 cut(s)	745
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.