Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

27611433 .. 27612308

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCTTTATATATTGACTGCTAATGCTGCAGTTGAAACTCACAGATTGCTCCTACTGCCTTTAGAGTTCCAAACAATGCTTTCTCTTCAATTACTTGTGCTATTGCTGTCCAAACTTTTTCTGCTTCAATCTACTTTTGCAATTGATTTTGCCTTCAATGGTTTCAATTCTTCTGATATCTTGCTCTATGGCAATGCAACAATAGATTCTGGTGTTCTTTCTCTTACTGAAAATAGCACCTATTCTATTGGTAGAGCTCTCTACAGTGCCAAGGTACCCACAAGGTATCCAAACTCCTTAAACCTTCTGCCTTTCACAACCTCTTTCACCTTTTCTATATCTCCAAACAAGGATCTTCTCGGGGGCCATGGATTCGTCCTCATTTTTGTCCCTGCTCCTGGTATCCAAGGTGCCTCTGCAGCGCAGTATCTTGGCTTCTTGAACAATACAAACGATGGTAATCCTAGCAACCATGCTTTTGGTATCGAATTTGATGTGTTCCAAGACAAAAAATACGGCGATATTGACAATAATCATGTTGGTGTTGATGTCAATTCTCTAACTTCTCTGGCTTCTTACAAAGCCGGATACTGGTTTGCCGATGACACGAAGGAGGACAGTAACAGCACTAATTGGTCTTTCAAGGAACTAGAGCTGAACGATGGAGCCAATTACCAAGTATGGATTGAGTTCTGGAACAACCAGCTCAGCATCACATTGGCTCCAGAAAACATAAAAAAGCCAGGGAGACCTTTGATTATGGTTCCTCTTGATCTCTCTGATGTTTTCCTTGATGAAATGTACGTGGGGCTCACTGCATCAACCGGAGCAAACATGGTAAATTATAAAATTTTGAGTTGGAGCTTCAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

291

Amino Acids

32.2

Weight (kDa)

4.58

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	48 - 290	2.1e-61	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	274, 410
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	488, 849
AcuI	CTGAAG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	276, 803
AfiI	CCNNNNNNNGG	2 cut(s)	398, 591
AgsI	TTSAA	7 cut(s)	35, 89, 128, 157, 166, 442, 643
AjnI	CCWGG	2 cut(s)	397, 742
AluBI	AGCT	4 cut(s)	257, 655, 706, 864
AluI	AGCT	4 cut(s)	257, 655, 706, 864
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	742
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	26, 419
ApoI	RAATTY	2 cut(s)	488, 849
Asp718I	GGTACC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	274, 410
BanII	GRGCYC	2 cut(s)	259, 813
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	13, 431
BccI	CCATC	2 cut(s)	449, 656
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	399, 744
BciVI	GTATCC	3 cut(s)	297, 413, 581
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	2 cut(s)	465, 650
BfmI	CTRYAG	3 cut(s)	27, 262, 417
BfuI	GTATCC	3 cut(s)	297, 413, 581
BisI	GCNGC	2 cut(s)	27, 420
BlpI	GCTNAGC	1 cut(s)	707
BlsI	GCNGC	2 cut(s)	28, 421
Bme1390I	CCNGG	2 cut(s)	399, 744
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	6 cut(s)	276, 365, 412, 667, 723, 765
BmrFI	CCNGG	2 cut(s)	399, 744
BmsI	GCATC	2 cut(s)	720, 827
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	707
BsaAI	YACGTR	1 cut(s)	805
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	4 cut(s)	270, 367, 406, 743
BsaWI	WCCGGW	1 cut(s)	824
BsaXI	ACNNNNNCTCC	3 cut(s)	706, 736, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 591
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	399, 744
BseDI	CCNNGG	4 cut(s)	270, 367, 406, 743
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	398, 591
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	2 cut(s)	13, 431
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	2 cut(s)	274, 410
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	585, 825
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	398, 591
BsmAI	GTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	259, 813
Bsp143I	GATC	2 cut(s)	352, 772
Bsp1720I	GCTNAGC	1 cut(s)	707
Bsp19I	CCATGG	1 cut(s)	367
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	720
BspLI	GGNNCC	6 cut(s)	276, 365, 412, 667, 723, 765
BspMAI	CTGCAG	2 cut(s)	31, 421
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	274, 410
BspTNI	GGTCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	4 cut(s)	270, 367, 406, 743
BssMI	GATC	2 cut(s)	352, 772
BssT1I	CCWWGG	3 cut(s)	270, 367, 406
Bst2UI	CCWGG	2 cut(s)	399, 744
Bst4CI	ACNGT	2 cut(s)	266, 620
Bst6I	CTCTTC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	805
BstDEI	CTNAG	1 cut(s)	707
BstDSI	CCRYGG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	355, 775
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	2 cut(s)	352, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 55, 419
BstNI	CCWGG	2 cut(s)	399, 744
BstSCI	CCNGG	2 cut(s)	397, 742
BstSFI	CTRYAG	3 cut(s)	27, 262, 417
BstV1I	GCAGC	2 cut(s)	13, 431
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	3 cut(s)	297, 413, 581
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	271, 813
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	275, 802
CviAII	CATG	4 cut(s)	368, 473, 536, 835
CviQI	GTAC	2 cut(s)	275, 802
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	2 cut(s)	354, 774
DpnII	GATC	2 cut(s)	352, 772
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	270, 367, 406
Eco24I	GRGCYC	2 cut(s)	259, 813
Eco31I	GGTCTC	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	850
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	397, 742
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	270, 367, 406
EcoT38I	GRGCYC	2 cut(s)	259, 813
ErhI	CCWWGG	3 cut(s)	270, 367, 406
FaeI	CATG	4 cut(s)	371, 476, 539, 838
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	4 cut(s)	367, 472, 535, 834
Fnu4HI	GCNGC	2 cut(s)	27, 420
FriOI	GRGCYC	2 cut(s)	259, 813
Fsp4HI	GCNGC	2 cut(s)	27, 420
FspBI	CTAG	2 cut(s)	465, 650
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	27, 420
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	585, 825
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	371, 476, 539, 838
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	2 cut(s)	206, 372
HpaII	CCGG	2 cut(s)	585, 825
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	175, 781
Hpy188III	TCNNGA	4 cut(s)	439, 694, 725, 770
HpyAV	CCTTC	3 cut(s)	163, 314, 604
HpyCH4III	ACNGT	2 cut(s)	266, 620
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	5 cut(s)	29, 140, 197, 419, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 55, 419
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	4 cut(s)	371, 476, 539, 838
HspAI	GCGC	1 cut(s)	422
KpnI	GGTACC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	352, 772
LmnI	GCTCC	6 cut(s)	54, 400, 665, 727, 827, 861
Lsp1109I	GCAGC	2 cut(s)	13, 431
LweI	GCATC	2 cut(s)	720, 827
MaeI	CTAG	2 cut(s)	465, 650
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	354, 774
MboI	GATC	2 cut(s)	352, 772
MboII	GAAGA	3 cut(s)	77, 162, 347
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	259, 813
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	5 cut(s)	331, 389, 424, 607, 777
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	2 cut(s)	585, 825
MspR9I	CCNGG	2 cut(s)	399, 744
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	399, 744
MwoI	GCNNNNNNNGC	3 cut(s)	26, 55, 419
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	2 cut(s)	352, 772
NlaIII	CATG	4 cut(s)	371, 476, 539, 838
NlaIV	GGNNCC	6 cut(s)	276, 365, 412, 667, 723, 765
PfeI	GAWTC	2 cut(s)	206, 372
PkrI	GCNGC	2 cut(s)	28, 421
Ppu21I	YACGTR	1 cut(s)	805
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	397, 742
PspGI	CCWGG	2 cut(s)	397, 742
PspN4I	GGNNCC	6 cut(s)	276, 365, 412, 667, 723, 765
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	31, 421
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	276, 803
RsaNI	GTAC	2 cut(s)	275, 802
RseI	CAYNNNNRTG	1 cut(s)	540
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	27, 420
Sau3AI	GATC	2 cut(s)	352, 772
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	399, 744
SduI	GDGCHC	2 cut(s)	259, 813
SfaNI	GCATC	2 cut(s)	720, 827
SfcI	CTRYAG	3 cut(s)	27, 262, 417
SmiMI	CAYNNNNRTG	1 cut(s)	540
SspMI	CTAG	2 cut(s)	465, 650
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	397, 742
StyI	CCWWGG	3 cut(s)	270, 367, 406
TaaI	ACNGT	2 cut(s)	266, 620
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	206, 372
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	271, 820
TseI	GCWGC	2 cut(s)	26, 419
TspDTI	ATGAA	1 cut(s)	810
TspRI	CASTG	2 cut(s)	271, 820
XapI	RAATTY	2 cut(s)	488, 849
XspI	CTAG	2 cut(s)	465, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.