Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

24978506 .. 24979294

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGTCCCTTCAATTAATTGTACTATTCCTAACCACCCTCTTTCTCCTCCAATCAAGTTTTGCAGTTGATTTCTCCTTCACTGGTTTCAACTCATCTGATATCTTGCTCTATGGAAATGCAACCACAGATTCTGGTGTTCTCTCTCTCACAACCAACACCACATTTTCCATGGGCAGAGCTCTCTACAATGCCAAGGTTCCCACAAGGTATCCAGATTCCATAAACCTTTTGCCTTTTACCACCTCTTTCACCTTTTCCATAGCCCCATACGAGGACTCTCTCCCTGGCCACGGATTCGTCCTTGTTTTCGTTCCCTCTCCAGGCATCCAATCCGCCTCTCCATCCCAACATCTCGGCTTCTTGAACAATACCAATAACGGTAACCCCAACAACCACGCTTTTGGAGTCGAATTTGATGTGTTCCAGAACAAAGAATTCGGTGACATCAACGATAATCACGTCGGCGTTAATGTCAATTCTCTAATTTCTCTGGCTTCTTACAACGCTGGATACTGGCTTGGTGAGGGCAGTAACATTACTGACTTGTCTTTCAAGGAAATAAAGCTGAGTAGCGGAGACAACTATCAAGCTTGGATTGAGTACTGGAATTACCAGCTCAGCATAACATTGGCTCCTGAAAATGTGAAGAAGCCTGAGACGCCTTTGATTAGGGTTCCTCTTGATCTCACTCAAGTTTTTCTTGATGAAATGTATGTTGGTTTCACTGCATCAACCGGCCAACCAATTGAAGATCATAAAATTCTGAACTGGAGCTTCAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

263

Amino Acids

29.03

Weight (kDa)

4.46

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 261	6.3e-66	Legume lectin domain
Lectin_L-type_dom	PF18483	37 - 255	2.9e-07	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	336, 576
AcoI	YGGCCR	2 cut(s)	289, 739
AcsI	RAATTY	3 cut(s)	413, 437, 762
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	2 cut(s)	24, 605
AfiI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
AgsI	TTSAA	6 cut(s)	14, 91, 367, 556, 752, 781
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	286, 322
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	5 cut(s)	182, 568, 593, 619, 777
AluI	AGCT	5 cut(s)	182, 568, 593, 619, 777
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	573, 653
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	289, 739
ApoI	RAATTY	3 cut(s)	413, 437, 762
AseI	ATTAAT	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	244, 455, 536
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	288, 324
BciVI	GTATCC	2 cut(s)	222, 506
BcoDI	GTCTC	2 cut(s)	573, 653
BfuI	GTATCC	2 cut(s)	222, 506
BlpI	GCTNAGC	1 cut(s)	620
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	2 cut(s)	288, 324
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	201, 636, 678
BmrFI	CCNGG	2 cut(s)	288, 324
BmsI	GCATC	2 cut(s)	336, 740
BpmI	CTGGAG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	171, 195, 286, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 293, 323
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	4 cut(s)	88, 521, 611, 776
BseBI	CCWGG	2 cut(s)	288, 324
BseDI	CCNNGG	4 cut(s)	171, 195, 286, 292
BseGI	GGATG	2 cut(s)	327, 344
BseLI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
BseMII	CTCAG	3 cut(s)	560, 634, 648
BseNI	ACTGG	4 cut(s)	88, 521, 611, 776
BseRI	GAGGAG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	291, 741
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	738
BslI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
BsmAI	GTCTC	2 cut(s)	573, 653
BsmBI	CGTCTC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	291, 741
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	685, 754
Bsp1720I	GCTNAGC	1 cut(s)	620
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	336, 576
BspANI	GGCC	2 cut(s)	291, 741
BspCNI	CTCAG	3 cut(s)	561, 633, 649
BspLI	GGNNCC	3 cut(s)	201, 636, 678
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	4 cut(s)	88, 521, 611, 776
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	4 cut(s)	171, 195, 286, 292
BssMI	GATC	2 cut(s)	685, 754
BssNI	GRCGYC	1 cut(s)	662
BssT1I	CCWWGG	2 cut(s)	171, 195
Bst2UI	CCWGG	2 cut(s)	288, 324
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	662
BstDEI	CTNAG	3 cut(s)	569, 620, 657
BstDSI	CCRYGG	2 cut(s)	171, 292
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	327, 344
BstKTI	GATC	2 cut(s)	688, 757
BstMAI	GTCTC	2 cut(s)	573, 653
BstMBI	GATC	2 cut(s)	685, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNI	CCWGG	2 cut(s)	288, 324
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	286, 322
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuI	GTATCC	2 cut(s)	222, 506
BsuRI	GGCC	2 cut(s)	291, 741
BtgI	CCRYGG	2 cut(s)	171, 292
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	327, 344
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	81, 726
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	737
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	23, 604
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	2 cut(s)	23, 604
DdeI	CTNAG	3 cut(s)	569, 620, 657
DpnI	GATC	2 cut(s)	687, 756
DpnII	GATC	2 cut(s)	685, 754
EaeI	YGGCCR	2 cut(s)	289, 739
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	171, 195
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	286, 322
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	171, 195
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	171, 195
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	1 cut(s)	175
FaiI	YATR	8 cut(s)	114, 173, 224, 263, 271, 626, 717, 759
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	1 cut(s)	171
FokI	GGATG	2 cut(s)	314, 331
FriOI	GRGCYC	1 cut(s)	184
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	291, 741
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	6 cut(s)	5, 131, 218, 278, 297, 408
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	3 cut(s)	244, 455, 536
Hpy188I	TCNGA	2 cut(s)	100, 768
Hpy188III	TCNNGA	6 cut(s)	215, 364, 427, 638, 683, 704
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	20, 88
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	65, 122, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpyF3I	CTNAG	3 cut(s)	569, 620, 657
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	685, 754
LmnI	GCTCC	2 cut(s)	640, 774
LweI	GCATC	2 cut(s)	336, 740
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	383, 443, 533
MalI	GATC	2 cut(s)	687, 756
MboI	GATC	2 cut(s)	685, 754
MboII	GAAGA	2 cut(s)	661, 764
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	14, 272, 417
MnlI	CCTC	8 cut(s)	50, 59, 256, 268, 328, 349, 520, 690
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	2 cut(s)	17, 471
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	2 cut(s)	288, 324
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	2 cut(s)	288, 324
MwoI	GCNNNNNNNGC	1 cut(s)	661
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	685, 754
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	3 cut(s)	201, 636, 678
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	131, 218, 297
PleI	GAGTC	3 cut(s)	13, 272, 416
PpsI	GAGTC	3 cut(s)	13, 272, 416
PshBI	ATTAAT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	286, 322
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	2 cut(s)	286, 322
PspN4I	GGNNCC	3 cut(s)	201, 636, 678
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	24, 605
RsaNI	GTAC	2 cut(s)	23, 604
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	17, 471
Sau3AI	GATC	2 cut(s)	685, 754
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	3 cut(s)	14, 272, 417
ScrFI	CCNGG	2 cut(s)	288, 324
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	336, 740
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
SsiI	CCGC	2 cut(s)	336, 576
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	286, 322
StyI	CCWWGG	2 cut(s)	171, 195
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	411
TatI	WGTACW	2 cut(s)	22, 603
TfiI	GAWTC	3 cut(s)	131, 218, 297
Tru1I	TTAA	2 cut(s)	17, 471
Tru9I	TTAA	2 cut(s)	17, 471
TscAI	CASTG	2 cut(s)	88, 733
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	723
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	88, 733
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	3 cut(s)	413, 437, 762
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.