Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5624326 .. 5625519

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAGATTCACAAACTCTGTTTTCTTGTTCTGTTCTTAGCTAACGCAGCTTTTGCCGTCAAATTCAACTTCGATTCCTTCGATGGCAGCAACTTGTTATTCCTAGGAGACGCAGAGCTTGGTCCTTCCTCTGATGGTGTAAGCCGATCCGGAGCTTTATCCATGACCCGAGACGAGAACCCATTCTCTCATGGTCAAGGTCTTTACATCAATCAAATCCCATTCAAACCTTCAAACACTTCTTCTCCTTTTTCATTTGAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAACCTAACTCCGGTCAAGGTTTCGCCTTCATCATAACCCCGGAAGCTGATAACTCCGGTGCTTCAGATGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAGAACCACATCTTGGCTATCGAATTCGATACTTTTCAGAACAAAGAGTTTCTAGACATTAGTGGTAACCATGTTGGAGTTAACATCAACTCAATGACTTCTCTTGTCGCTGAGAAAGCTGGTTACTGGGTTCAGACAAGAGTCGGGAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTGGAGAGAGGTTCAAGGCTTGGGTTGAGTTCAGAAACAAAGACTCTACGATTACGGTTACACTCGCGCCTGAAAACGTTAAGAAACCTAAGCGGGCTTTGATCGAAGCTCCCAGAGTGCTCAATGAAGTTCTTCTTCAAAACATGTACGCCGGTTTTGCTGGTTCCATGGGACGTGCCGTTGAGCGTCACGATATTTGGAGCTGGTCGTTTGAAAACGCCGCCAAAAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

276

Amino Acids

30.51

Weight (kDa)

6.98

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 273	1.2e-68	Legume lectin domain
Lectin_L-type_dom	PF18483	79 - 263	2.1e-06	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccII	CGCG	1 cut(s)	662
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	3 cut(s)	366, 688, 816
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	62, 431
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	2 cut(s)	305, 421
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	7 cut(s)	67, 226, 234, 260, 610, 734, 809
AjiI	CACGTC	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	41, 50, 118, 155, 341, 527, 704, 798
AluI	AGCT	8 cut(s)	41, 50, 118, 155, 341, 527, 704, 798
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	102, 165
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	47, 87
ApoI	RAATTY	2 cut(s)	62, 431
Asp700I	GAANNNNTTC	2 cut(s)	182, 726
AspA2I	CCTAGG	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	2 cut(s)	59, 99
BccI	CCATC	5 cut(s)	77, 128, 287, 356, 392
BceAI	ACGGC	2 cut(s)	41, 758
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	102, 165
BfaI	CTAG	2 cut(s)	104, 461
BisI	GCNGC	3 cut(s)	48, 88, 816
BlnI	CCTAGG	1 cut(s)	103
BlsI	GCNGC	3 cut(s)	49, 89, 817
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	544
BoxI	GACNNNNGTC	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	684
BpuMI	CCSGG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	103, 333, 762
BsaWI	WCCGGW	3 cut(s)	149, 305, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 421
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	539
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	103, 333, 762
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	305, 421
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	59, 99
Bsh1236I	CGCG	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	5 cut(s)	150, 306, 335, 351, 747
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	305, 421
BsmAI	GTCTC	2 cut(s)	102, 165
BsmBI	CGTCTC	2 cut(s)	102, 165
BsmFI	GGGAC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	146, 696
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	3 cut(s)	366, 688, 816
BspCNI	CTCAG	1 cut(s)	511
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	3 cut(s)	103, 333, 762
BssMI	GATC	2 cut(s)	146, 696
BssT1I	CCWWGG	2 cut(s)	103, 762
Bst4CI	ACNGT	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	4 cut(s)	37, 519, 590, 684
BstDSI	CCRYGG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	2 cut(s)	149, 699
BstMAI	GTCTC	2 cut(s)	102, 165
BstMBI	GATC	2 cut(s)	146, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 53, 524, 752
BstNSI	RCATGY	1 cut(s)	742
BstPAI	GACNNNNGTC	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	2 cut(s)	59, 99
BtgI	CCRYGG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	770
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	690
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	2 cut(s)	119, 770
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	5 cut(s)	163, 191, 479, 739, 763
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	4 cut(s)	37, 519, 590, 684
DpnI	GATC	2 cut(s)	148, 698
DpnII	GATC	2 cut(s)	146, 696
DraI	TTTAAA	1 cut(s)	577
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	103, 762
Eco32I	GATATC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	473
EcoO65I	GGTNACC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	103, 762
ErhI	CCWWGG	2 cut(s)	103, 762
Esp3I	CGTCTC	2 cut(s)	102, 165
FaeI	CATG	5 cut(s)	166, 194, 482, 742, 766
FaiI	YATR	6 cut(s)	164, 192, 329, 480, 740, 764
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	162, 190, 478, 738, 762
FauI	CCCGC	1 cut(s)	681
Fnu4HI	GCNGC	3 cut(s)	48, 88, 816
Fsp4HI	GCNGC	3 cut(s)	48, 88, 816
FspBI	CTAG	2 cut(s)	104, 461
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	3 cut(s)	48, 88, 816
HapII	CCGG	5 cut(s)	150, 306, 335, 351, 747
HgaI	GACGC	2 cut(s)	119, 770
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	5 cut(s)	166, 194, 482, 742, 766
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	6 cut(s)	7, 74, 378, 549, 586, 638
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	5 cut(s)	150, 306, 335, 351, 747
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	133, 361, 377, 447, 543, 629
Hpy188III	TCNNGA	4 cut(s)	150, 461, 553, 785
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	4 cut(s)	88, 135, 240, 331
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	672, 769
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 53, 524, 752
HpyF3I	CTNAG	4 cut(s)	37, 519, 590, 684
HpySE526I	ACGT	2 cut(s)	672, 769
Hsp92II	CATG	5 cut(s)	166, 194, 482, 742, 766
HspAI	GCGC	1 cut(s)	662
Kpn2I	TCCGGA	1 cut(s)	149
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	146, 696
LmnI	GCTCC	3 cut(s)	152, 709, 795
Lsp1109I	GCAGC	2 cut(s)	59, 99
MaeI	CTAG	2 cut(s)	104, 461
MaeII	ACGT	2 cut(s)	672, 769
MaeIII	GTNAC	4 cut(s)	473, 530, 652, 782
MalI	GATC	2 cut(s)	148, 698
MboI	GATC	2 cut(s)	146, 696
MboII	GAAGA	3 cut(s)	234, 719, 722
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	2 cut(s)	62, 431
MlyI	GAGTC	2 cut(s)	558, 632
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	139, 297, 392, 597
MroI	TCCGGA	1 cut(s)	149
MroXI	GAANNNNTTC	2 cut(s)	182, 726
MseI	TTAA	3 cut(s)	489, 576, 675
MspI	CCGG	5 cut(s)	150, 306, 335, 351, 747
MspR9I	CCNGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	47, 53, 524, 752
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	2 cut(s)	146, 696
NlaIII	CATG	5 cut(s)	166, 194, 482, 742, 766
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	742
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	2 cut(s)	182, 726
PfeI	GAWTC	4 cut(s)	7, 74, 378, 586
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	49, 89, 817
PleI	GAGTC	2 cut(s)	557, 632
PpsI	GAGTC	2 cut(s)	557, 632
PscI	ACATGT	1 cut(s)	738
PshAI	GACNNNNGTC	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	672
PspEI	GGTNACC	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	489, 576, 675
SatI	GCNGC	3 cut(s)	48, 88, 816
Sau3AI	GATC	2 cut(s)	146, 696
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	558, 632
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	717
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	62, 431
SsiI	CCGC	3 cut(s)	366, 688, 816
SspMI	CTAG	2 cut(s)	104, 461
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	2 cut(s)	103, 762
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	2 cut(s)	675, 772
TaqI	TCGA	5 cut(s)	72, 81, 429, 435, 699
TasI	AATT	2 cut(s)	62, 431
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	4 cut(s)	7, 74, 378, 586
Tru1I	TTAA	3 cut(s)	489, 576, 675
Tru9I	TTAA	3 cut(s)	489, 576, 675
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	2 cut(s)	47, 87
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	3 cut(s)	243, 313, 735
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	62, 431
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	1 cut(s)	742
XmaJI	CCTAGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	182, 726
XspI	CTAG	2 cut(s)	104, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.