Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

18668684 .. 18669472

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGTCCCTTCAATTACTTGTACTATTCCTAACCAACCTCCTTCTCCTCCAATCGAGTTTTGCAGTTGATTTCTCCTTCACTGGTTTCAACTCATCTGATATCTTGCTCTTTGGAAATGCAACAACAGATTCTGGTGTTCTTTCTCTCACAAGCAACACCACATTTTCCATTGGCAGAGCTCTCTACAACGCCAAAGTCCCCACAAGGTATCCAAACTCCTTAAACCTTCTGCCTTTCACAACCTCCTTCACCTTTTCCATAACCCCACACAAGGACTCTCTCCCCGGCCATGGATTCGTCCTTGTTTTCGTTCCCTCTCCCGGCATCCAATCCGCCTCTCCATCCCAACATCTCGGCTTCTTGAATAAAACCAATGACGGTAACCCCAACAACCACGCTTTTGGCGTCGAATTTGATGTGTTCCAAAACAAAGAATTCGGTGATATCAACGATAATCACGTCGGCGTTAACGTCAATTCTCTAACTTCTCTGGCTTCTTACAAAGCTGGATACTGGCTTGGTGAGGGCAGTAACGACACTAACTTGTCTTTCAAGGAAATAAAGCTGAATAGTGGAGACAACTATCAAGCTTGGATTGAGTACTGGAATTACCAGCTCAGCATAACATTGGCTCCTGAAAATGTGAAGAAGCCTGAGCAGCCTTTGATTAGGGTTCCACTTGATCTCTCTGAAGTTTTTCTTGATGAAATGTATGTTGGTTTCACTGCATCAACTGGCCAACTCATTGAAGATCATAAAATTCTGACCTGGAGCTTCAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

263

Amino Acids

29.03

Weight (kDa)

4.8

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 261	1.4e-66	Legume lectin domain
Lectin_L-type_dom	PF18483	38 - 255	2.3e-08	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	336
AcoI	YGGCCR	2 cut(s)	289, 739
AcsI	RAATTY	3 cut(s)	413, 437, 762
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	2 cut(s)	24, 605
AfiI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
AgsI	TTSAA	6 cut(s)	14, 91, 367, 556, 752, 781
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	6 cut(s)	182, 509, 568, 593, 619, 777
AluI	AGCT	6 cut(s)	182, 509, 568, 593, 619, 777
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	573
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	289, 739
ApeKI	GCWGC	1 cut(s)	661
ApoI	RAATTY	3 cut(s)	413, 437, 762
Asp700I	GAANNNNTTC	1 cut(s)	699
AsuC2I	CCSGG	2 cut(s)	288, 324
AsuHPI	GGTGA	3 cut(s)	244, 455, 536
BalI	TGGCCA	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	772
BciVI	GTATCC	2 cut(s)	222, 506
BcnI	CCSGG	2 cut(s)	288, 324
BcoDI	GTCTC	1 cut(s)	573
BfuI	GTATCC	2 cut(s)	222, 506
BisI	GCNGC	1 cut(s)	662
BlpI	GCTNAGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	663
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	288, 324, 772
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	636, 678
BmrFI	CCNGG	3 cut(s)	288, 324, 772
BmsI	GCATC	2 cut(s)	336, 740
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	288, 324
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	286, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 293, 323
Bse1I	ACTGG	4 cut(s)	88, 521, 611, 742
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	2 cut(s)	286, 292
BseGI	GGATG	2 cut(s)	327, 344
BseLI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
BseMII	CTCAG	2 cut(s)	634, 648
BseNI	ACTGG	4 cut(s)	88, 521, 611, 742
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	673
BshFI	GGCC	2 cut(s)	291, 741
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	288, 324
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	274, 293, 323
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	291, 741
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	685, 754
Bsp1720I	GCTNAGC	1 cut(s)	620
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	291, 741
BspCNI	CTCAG	2 cut(s)	633, 649
BspLI	GGNNCC	2 cut(s)	636, 678
BsrI	ACTGG	4 cut(s)	88, 521, 611, 742
BssECI	CCNNGG	2 cut(s)	286, 292
BssMI	GATC	2 cut(s)	685, 754
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	620, 657
BstDSI	CCRYGG	1 cut(s)	292
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	327, 344
BstKTI	GATC	2 cut(s)	688, 757
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	2 cut(s)	685, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNI	CCWGG	1 cut(s)	772
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	286, 322, 770
BstV1I	GCAGC	1 cut(s)	673
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuI	GTATCC	2 cut(s)	222, 506
BsuRI	GGCC	2 cut(s)	291, 741
BtgI	CCRYGG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	327, 344
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	81, 726
CaiI	CAGNNNCTG	1 cut(s)	134
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	23, 604
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	2 cut(s)	23, 604
DdeI	CTNAG	2 cut(s)	620, 657
DpnI	GATC	2 cut(s)	687, 756
DpnII	GATC	2 cut(s)	685, 754
EaeI	YGGCCR	2 cut(s)	289, 739
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	2 cut(s)	103, 448
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	714
Eco91I	GGTNACC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	770
EcoRV	GATATC	2 cut(s)	103, 448
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	263, 294, 626, 717, 759
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	662
FokI	GGATG	2 cut(s)	314, 331
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	662
GluI	GCNGC	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	291, 741
HapII	CCGG	2 cut(s)	288, 324
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	4 cut(s)	5, 131, 278, 297
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	288, 324
HphI	GGTGA	3 cut(s)	244, 455, 536
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	3 cut(s)	100, 694, 768
Hpy188III	TCNNGA	3 cut(s)	364, 638, 704
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	2 cut(s)	413, 467
HpyAV	CCTTC	5 cut(s)	20, 53, 88, 239, 259
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	462, 474
HpyCH4V	TGCA	3 cut(s)	65, 122, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpyF3I	CTNAG	2 cut(s)	620, 657
HpySE526I	ACGT	2 cut(s)	462, 474
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	685, 754
LmnI	GCTCC	2 cut(s)	640, 774
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	2 cut(s)	336, 740
MaeII	ACGT	2 cut(s)	462, 474
MaeIII	GTNAC	2 cut(s)	383, 533
MalI	GATC	2 cut(s)	687, 756
MboI	GATC	2 cut(s)	685, 754
MboII	GAAGA	2 cut(s)	661, 764
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	7 cut(s)	14, 413, 437, 478, 610, 762, 784
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	2 cut(s)	14, 272
MnlI	CCTC	6 cut(s)	50, 59, 256, 328, 349, 520
Mox20I	TGGCCA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	2 cut(s)	224, 471
Msp20I	TGGCCA	1 cut(s)	741
MspI	CCGG	2 cut(s)	288, 324
MspR9I	CCNGG	3 cut(s)	288, 324, 772
MvaI	CCWGG	1 cut(s)	772
MwoI	GCNNNNNNNGC	1 cut(s)	661
NciI	CCSGG	2 cut(s)	288, 324
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	2 cut(s)	685, 754
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	636, 678
NmeAIII	GCCGAG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	405, 459, 471
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	131, 297
PkrI	GCNGC	1 cut(s)	663
PleI	GAGTC	2 cut(s)	13, 272
PpsI	GAGTC	2 cut(s)	13, 272
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	2 cut(s)	636, 678
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	24, 605
RsaNI	GTAC	2 cut(s)	23, 604
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	224, 471
SatI	GCNGC	1 cut(s)	662
Sau3AI	GATC	2 cut(s)	685, 754
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	2 cut(s)	14, 272
ScrFI	CCNGG	3 cut(s)	288, 324, 772
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	336, 740
Sse9I	AATT	7 cut(s)	14, 413, 437, 478, 610, 762, 784
SsiI	CCGC	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	3 cut(s)	286, 322, 770
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	465, 477
TaqI	TCGA	2 cut(s)	56, 411
TasI	AATT	7 cut(s)	14, 413, 437, 478, 610, 762, 784
TatI	WGTACW	2 cut(s)	22, 603
TfiI	GAWTC	2 cut(s)	131, 297
Tru1I	TTAA	2 cut(s)	224, 471
Tru9I	TTAA	2 cut(s)	224, 471
TscAI	CASTG	2 cut(s)	88, 733
TseI	GCWGC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	88, 733
XapI	RAATTY	3 cut(s)	413, 437, 762
XmnI	GAANNNNTTC	1 cut(s)	699
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.