Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

10736843 .. 10737943

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCTGATGCAGAAGACACAAGTAGTTGATTTCTCCTTCACTGGTTTCAATTCATCTGATATCTTGCTCTATGGAAATGCAACCATAGATTCTGGTGTTCTTTCTCTTACAAGAAATACCACCTTTTCCATTGGTAGAGCTCTCTACAATGCTAAGGTACACACAAGATATCCAAACTCCTCGAACCTCTTGCCTTTCACATCCTCCTTCACCTTTTCTATATCCCCATACAAGGATTCTCTCCCTGGCCATGGATTTGTCCTCATTTTCGTTCCTTCTACCGGCATCGAAGGTGCCTCTTCTTCCCAACATCTCGGTTTCTTGAACAGTACCAATGATGGTGATCCCAGAAACCATGCTTTTGGTGTCGAATTTGATGTGTTTCAAAATCAAGAATTCAATGATGTTAATGACAACCATGTTGGTGTTGATGTCAATTCTCTTACTTCTCTAGTTTCCTACAAAGCCGGGTATTGGCTTGGTGATAATACAAAGGATGACAGTAACAACACTAATTGGTCTTTCAAGGAAGTAAAGCTGAACAATGGAGCCAACTATCAAGTTTGGATTGAGTACTGGAACTACCAGCTCAGCATAACATTGGCTCCTGAAAATGTGAAAAAGCCAGAGAGACCTTTGATTCAGATTCCTCTTGATCTCTCTGATGTTTTTCTTGATGACATGTACGTTGGGCTCACTGCATCAACTGGGCAACTCATTGAAGACCATAAAATTCTGAGTTGGAGCTTCAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

253

Amino Acids

28.15

Weight (kDa)

4.79

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	371, 395, 732
AcuI	CTGAAG	1 cut(s)	733
AfaI	GTAC	4 cut(s)	159, 331, 575, 686
AfiI	CCNNNNNNNGG	4 cut(s)	232, 251, 281, 474
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	6 cut(s)	49, 325, 386, 400, 526, 722
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	4 cut(s)	140, 538, 589, 747
AluI	AGCT	4 cut(s)	140, 538, 589, 747
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	371, 395, 732
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	202, 353, 494
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	142, 696
BbsI	GAAGAC	2 cut(s)	20, 729
Bbv12I	GWGCWC	1 cut(s)	142
BccI	CCATC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	452
BlpI	GCTNAGC	1 cut(s)	590
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	2 cut(s)	246, 469
BmiI	GGNNCC	3 cut(s)	295, 550, 606
BmrFI	CCNGG	2 cut(s)	246, 469
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	2 cut(s)	294, 710
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	2 cut(s)	20, 729
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	244, 250
BsaXI	ACNNNNNCTCC	3 cut(s)	589, 619, 736
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 251, 281, 474
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	46, 581, 712
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	244, 250
BseGI	GGATG	2 cut(s)	200, 502
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	4 cut(s)	232, 251, 281, 474
BseMII	CTCAG	2 cut(s)	604, 728
BseNI	ACTGG	3 cut(s)	46, 581, 712
BseRI	GAGGAG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	282, 468
BslI	CCNNNNNNNGG	4 cut(s)	232, 251, 281, 474
BsmAI	GTCTC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	142, 696
Bsp143I	GATC	2 cut(s)	343, 655
Bsp1720I	GCTNAGC	1 cut(s)	590
Bsp19I	CCATGG	1 cut(s)	250
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	603, 729
BspLI	GGNNCC	3 cut(s)	295, 550, 606
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	46, 581, 712
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	244, 250
BssMI	GATC	2 cut(s)	343, 655
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	329, 503
Bst6I	CTCTTC	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	153, 590, 737
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	200, 502
BstKTI	GATC	2 cut(s)	346, 658
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	2 cut(s)	343, 655
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	244, 467
BstV2I	GAAGAC	2 cut(s)	20, 729
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	200, 502
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	39, 696
Cfr10I	RCCGGY	1 cut(s)	281
Csp6I	GTAC	4 cut(s)	158, 330, 574, 685
CviAII	CATG	4 cut(s)	251, 356, 419, 682
CviQI	GTAC	4 cut(s)	158, 330, 574, 685
DdeI	CTNAG	3 cut(s)	153, 590, 737
DpnI	GATC	2 cut(s)	345, 657
DpnII	GATC	2 cut(s)	343, 655
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	142, 696
Eco31I	GGTCTC	1 cut(s)	625
Eco32I	GATATC	2 cut(s)	61, 170
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	2 cut(s)	61, 170
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	2 cut(s)	142, 696
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	4 cut(s)	254, 359, 422, 685
FatI	CATG	4 cut(s)	250, 355, 418, 681
FokI	GGATG	2 cut(s)	187, 509
FriOI	GRGCYC	2 cut(s)	142, 696
FspBI	CTAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	282, 468
Hin1II	CATG	4 cut(s)	254, 359, 422, 685
HinfI	GANTC	4 cut(s)	89, 236, 640, 646
HpaII	CCGG	2 cut(s)	282, 468
HphI	GGTGA	3 cut(s)	202, 353, 494
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	58, 645, 664, 738
Hpy188III	TCNNGA	5 cut(s)	322, 392, 608, 653, 674
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	4 cut(s)	46, 217, 284, 285
HpyCH4III	ACNGT	2 cut(s)	329, 503
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	3 cut(s)	10, 80, 701
HpyF3I	CTNAG	3 cut(s)	153, 590, 737
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	4 cut(s)	254, 359, 422, 685
Kzo9I	GATC	2 cut(s)	343, 655
LmnI	GCTCC	3 cut(s)	548, 610, 744
LweI	GCATC	2 cut(s)	294, 710
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	345, 657
MboI	GATC	2 cut(s)	343, 655
MboII	GAAGA	4 cut(s)	25, 291, 294, 734
MhlI	GDGCHC	2 cut(s)	142, 696
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	7 cut(s)	49, 371, 395, 436, 514, 732, 754
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	722
MnlI	CCTC	6 cut(s)	190, 197, 214, 272, 307, 660
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	2 cut(s)	282, 468
MspR9I	CCNGG	2 cut(s)	246, 469
MvaI	CCWGG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	343, 655
NlaIII	CATG	4 cut(s)	254, 359, 422, 685
NlaIV	GGNNCC	3 cut(s)	295, 550, 606
NspI	RCATGY	1 cut(s)	685
PciI	ACATGT	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	89, 236, 640, 646
PscI	ACATGT	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	295, 550, 606
RsaI	GTAC	4 cut(s)	159, 331, 575, 686
RsaNI	GTAC	4 cut(s)	158, 330, 574, 685
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	343, 655
ScaI	AGTACT	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	246, 469
SduI	GDGCHC	2 cut(s)	142, 696
SfaNI	GCATC	2 cut(s)	294, 710
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	7 cut(s)	49, 371, 395, 436, 514, 732, 754
SspMI	CTAG	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	244, 467
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	329, 503
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	182, 288, 369
TasI	AATT	7 cut(s)	49, 371, 395, 436, 514, 732, 754
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	4 cut(s)	89, 236, 640, 646
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	46, 703
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	46, 703
XapI	RAATTY	3 cut(s)	371, 395, 732
XceI	RCATGY	1 cut(s)	685
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.