Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Forward (+)

19781288 .. 19782352

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCAGATCCACAAACTCTGTATTTTTGTTCTGTTCATATCTTTGTTAAGCTCTAAAACCATTTCCGCCGTCAAATTCAACTTCAACCGTTTCGACGGAACAAATCTAATCTTCATCGGGTACGCCGAGCTAGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACCCGTGACAACATTCCATTCTCACATGGTCAAGGTCTCTACACAGATCCAATCCCATTCAAATCTTCCAACAACACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACTTTCTCCATCACTCCTCGACGGTCAAACCCTAACCCTGGTCATGGTATCGCCTTCATCGTGGTCCCAACCGTAGCCTACGAGTACGACCAAGACTCAACCCGCGGCTTCCTCGGTCTAGTTAACCTCACAACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGATGTTTTCCAAGACAAACGTTTTGGTGATATTAATGATAATCATGTTGGTGTTAATATTAACTCTGTTAACTCAAAGGTTTCTGAGAAAGCTGGGTATTGGATTCAGACAAGAACTAGAGGGAAGAATCAATGGTTGTTTAAGGAAGTGAAGCTTAGTAGCGGAGACAACTACAAAGCTTGGATTGAGTATAAGAACAGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAAGAAACCGAAGAGGCCATTGATCGAAACACAAGTTGATCTCTCGGAGGTGGTTCTTGAGACTATGTATACCGGCTTTTCCGGTTCGATGGGTCGTGGCGTCGAGCGTCACGACATTTGGAGCTGGAGTTTTGAGAACACCGCCAAAAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

283

Amino Acids

31.83

Weight (kDa)

9.28

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	24 - 281	1.7e-69	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc16I	TGCGCA	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	6 cut(s)	66, 391, 393, 452, 624, 837
AclI	AACGTT	1 cut(s)	481
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	74, 458
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	2 cut(s)	122, 374
AfiI	CCNNNNNNNGG	2 cut(s)	326, 332
AgsI	TTSAA	4 cut(s)	79, 85, 238, 277
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	7 cut(s)	51, 130, 167, 554, 616, 641, 819
AluI	AGCT	7 cut(s)	51, 130, 167, 554, 616, 641, 819
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	3 cut(s)	218, 621, 749
AlwI	GGATC	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	1 cut(s)	710
ApoI	RAATTY	2 cut(s)	74, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	134, 159, 352
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	3 cut(s)	134, 159, 352
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BccI	CCATC	4 cut(s)	140, 305, 450, 778
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	218, 621, 749
BfaI	CTAG	3 cut(s)	131, 407, 579
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	3 cut(s)	134, 159, 352
BmgT120I	GGNCC	3 cut(s)	134, 159, 352
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	841
BpuEI	CTTGAG	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	325, 391, 400
BsaWI	WCCGGW	2 cut(s)	161, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 332
Bse118I	RCCGGY	2 cut(s)	156, 767
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	325, 391, 400
BseLI	CCNNNNNNNGG	2 cut(s)	326, 332
BseMII	CTCAG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	157, 162, 768, 777
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	326, 332
BsmAI	GTCTC	3 cut(s)	218, 621, 749
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	712
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	6, 223, 717, 733
BspACI	CCGC	6 cut(s)	66, 391, 393, 452, 624, 837
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	218
BsrFI	RCCGGY	2 cut(s)	156, 767
BssAI	RCCGGY	2 cut(s)	156, 767
BssECI	CCNNGG	3 cut(s)	325, 391, 400
BssMI	GATC	4 cut(s)	6, 223, 717, 733
BssNAI	GTATAC	1 cut(s)	765
BssNI	GRCGYC	1 cut(s)	795
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	89, 312, 361, 662
Bst6I	CTCTTC	1 cut(s)	701
BstACI	GRCGYC	1 cut(s)	795
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	546, 617
BstDSI	CCRYGG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	9, 226, 720, 736
BstMAI	GTCTC	3 cut(s)	218, 621, 749
BstMBI	GATC	4 cut(s)	6, 223, 717, 733
BstMCI	CGRYCG	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	6, 223
BstYI	RGATCY	2 cut(s)	6, 223
BstZ17I	GTATAC	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	712
BtgI	CCRYGG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	691
Cfr10I	RCCGGY	2 cut(s)	156, 767
Cfr13I	GGNCC	3 cut(s)	134, 159, 352
Cfr42I	CCGCGG	1 cut(s)	394
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	2 cut(s)	784, 791
Csp6I	GTAC	2 cut(s)	121, 373
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	5 cut(s)	151, 175, 203, 332, 506
CviQI	GTAC	2 cut(s)	121, 373
DdeI	CTNAG	2 cut(s)	546, 617
DpnI	GATC	4 cut(s)	8, 225, 719, 735
DpnII	GATC	4 cut(s)	6, 223, 717, 733
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	134, 159, 352
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	5 cut(s)	154, 178, 206, 335, 509
FaiI	YATR	9 cut(s)	38, 152, 176, 204, 333, 507, 654, 761, 765
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	5 cut(s)	150, 174, 202, 331, 505
FauI	CCCGC	1 cut(s)	398
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	3 cut(s)	131, 407, 579
FspI	TGCGCA	1 cut(s)	690
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	1 cut(s)	394
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	841
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	4 cut(s)	157, 162, 768, 777
HgaI	GACGC	2 cut(s)	784, 791
HhaI	GCGC	1 cut(s)	691
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	5 cut(s)	154, 178, 206, 335, 509
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	2 cut(s)	412, 532
HindII	GTYRAC	2 cut(s)	412, 532
HindIII	AAGCTT	2 cut(s)	614, 639
HinfI	GANTC	3 cut(s)	383, 565, 589
HpaI	GTTAAC	2 cut(s)	412, 532
HpaII	CCGG	4 cut(s)	157, 162, 768, 777
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	4 cut(s)	268, 412, 532, 765
Hpy188I	TCNGA	3 cut(s)	547, 570, 742
Hpy188III	TCNNGA	3 cut(s)	162, 752, 806
Hpy8I	GTNNAC	4 cut(s)	268, 412, 532, 765
Hpy99I	CGWCG	3 cut(s)	98, 312, 800
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	4 cut(s)	89, 312, 361, 662
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	4, 683
HpyF3I	CTNAG	2 cut(s)	546, 617
HpySE526I	ACGT	1 cut(s)	481
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	5 cut(s)	154, 178, 206, 335, 509
HspAI	GCGC	1 cut(s)	689
Kpn2I	TCCGGA	1 cut(s)	161
KspAI	GTTAAC	2 cut(s)	412, 532
KspI	CCGCGG	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	6, 223, 717, 733
LmnI	GCTCC	2 cut(s)	164, 816
MaeI	CTAG	3 cut(s)	131, 407, 579
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	182, 803
MalI	GATC	4 cut(s)	8, 225, 719, 735
MboI	GATC	4 cut(s)	6, 223, 717, 733
MboII	GAAGA	6 cut(s)	103, 234, 249, 252, 598, 718
MflI	RGATCY	2 cut(s)	6, 223
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	74, 458, 847
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	315, 410, 425, 575, 702, 736
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	8 cut(s)	47, 411, 495, 516, 522, 531, 603, 695
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	4 cut(s)	157, 162, 768, 777
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	393
NdeII	GATC	4 cut(s)	6, 223, 717, 733
NlaIII	CATG	5 cut(s)	154, 178, 206, 335, 509
NlaIV	GGNNCC	1 cut(s)	354
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	182, 803
NsbI	TGCGCA	1 cut(s)	690
PaqCI	CACCTGC	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 345, 804
PfeI	GAWTC	2 cut(s)	565, 589
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	169
Psp1406I	AACGTT	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	3 cut(s)	134, 159, 352
PsuI	RGATCY	2 cut(s)	6, 223
RsaI	GTAC	2 cut(s)	122, 374
RsaNI	GTAC	2 cut(s)	121, 373
RseI	CAYNNNNRTG	1 cut(s)	510
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	169
SacII	CCGCGG	1 cut(s)	394
SaqAI	TTAA	8 cut(s)	47, 411, 495, 516, 522, 531, 603, 695
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	4 cut(s)	6, 223, 717, 733
Sau96I	GGNCC	3 cut(s)	134, 159, 352
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	394
SgrBI	CCGCGG	1 cut(s)	394
SinI	GGWCC	3 cut(s)	134, 159, 352
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	3 cut(s)	74, 458, 847
SsiI	CCGC	6 cut(s)	66, 391, 393, 452, 624, 837
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	131, 407, 579
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	4 cut(s)	89, 312, 361, 662
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	7 cut(s)	93, 307, 456, 462, 720, 782, 798
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	74, 458, 847
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	565, 589
Tru1I	TTAA	8 cut(s)	47, 411, 495, 516, 522, 531, 603, 695
Tru9I	TTAA	8 cut(s)	47, 411, 495, 516, 522, 531, 603, 695
TseFI	GTSAC	2 cut(s)	182, 803
Tsp45I	GTSAC	2 cut(s)	182, 803
TspDTI	ATGAA	3 cut(s)	25, 103, 334
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	3 cut(s)	134, 159, 352
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	2 cut(s)	74, 458
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	3 cut(s)	131, 407, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.