Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011064

Physical Location & Seq

Genomic Coordinates Reverse (-)

28292053 .. 28293086

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTTTCTCTTCAATTACTTGTGCTATTGCTGTCCAAACTTTTTCTGCTTCAATCTACTTTTGCAATTGATTTTGCCTTCAATGGTTTCAATTCTTCTGATATCTTGCTCTATGGCAATGCAACAATAGATTCTGGTGTTCTTTCTCTTACTGAAAATAGCACCTATTCTATTGGTAGAGCTCTCTACAGTGCCAAGGTACCCACAAGGTATCCAAACTCCTTAAACCTTCTGCCTTTCACAACCTCTTTCACCTTTTCTATATCTCCAAACAAGGATCTTCTCGGGGGCCATGGATTCGTCCTCATTTTTGTCCCTGCTCCTGGTATCCAAGGTGCCTCTGCAGCGCAGTATCTTGGCTTCTTGAACAATACAAACGATGGTAATCCTAGCAACCATGCTTTTGGTATCGAATTTGATGTGTTCCAAGACAAAAAATACGGCGATATTGACAATAATCATGTTGGTGTTGATGTCAATTCTCTAACTTCTCTGGCTTCTTACAAAGCCGGATACTGGTTTGCCGATGACACGAAGGAGGACAGTAACAGCACTAATTGGTCTTTCAAGGAACTAGAGCTGAACGATGGAGCCAATTACCAAGTATGGATTGAGTTCTGGAACAACCAGCTCAGCATCACATTGGCTCCAGAAAACATAAAAAAGCCAGGGAGACCTTTGATTATGGTTCCTCTTGATCTCTCTGATGTTTTCCTTGATGAAATGTACGTGGGGCTCACTGCATCAACCGGAGCAAACATGGTAAATTATAAAATTTTGAGTTGGAGCTTCAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0014070 GO:0030312 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071323 GO:0071369 GO:0071395 GO:0071407 GO:0071417 GO:0071446 GO:0071495 GO:0071944 GO:0080167 GO:0098542 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

266

Amino Acids

29.34

Weight (kDa)

4.52

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 265	1.5e-61	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53060 AT1G53070 AT1G53080 AT3G15356 AT3G16530 AT5G03350
fragaria_vesca	FvH4_3g19922
malus_domestica	MD03G1228000.v1.1 MD11G1247400.v1.1
prunus_persica	Prupe.4G181000_v2.0.a1
pyrus_communis	pycom03g17540 pycom11g21970
rosa_chinensis	RchiOBHm_Chr5g0033601
rosa_laevigata	RLG00000033492
rosa_rugosa	Rorug05G0140800
rosa_samantha	Rh5AG232100 Rh5BG232800 Rh5CG261700 Rh5DG238400
rosa_wichuraiana	Rw5G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	2 cut(s)	199, 335
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	413, 774
AcuI	CTGAAG	1 cut(s)	775
AfaI	GTAC	2 cut(s)	201, 728
AfiI	CCNNNNNNNGG	2 cut(s)	323, 516
AgsI	TTSAA	6 cut(s)	14, 53, 82, 91, 367, 568
AjnI	CCWGG	2 cut(s)	322, 667
AluBI	AGCT	4 cut(s)	182, 580, 631, 789
AluI	AGCT	4 cut(s)	182, 580, 631, 789
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	413, 774
Asp718I	GGTACC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	284
BanI	GGYRCC	2 cut(s)	199, 335
BanII	GRGCYC	2 cut(s)	184, 738
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	374, 581
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	2 cut(s)	324, 669
BciVI	GTATCC	3 cut(s)	222, 338, 506
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	2 cut(s)	390, 575
BfmI	CTRYAG	2 cut(s)	187, 342
BfuI	GTATCC	3 cut(s)	222, 338, 506
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	324, 669
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	6 cut(s)	201, 290, 337, 592, 648, 690
BmrFI	CCNGG	2 cut(s)	324, 669
BmsI	GCATC	2 cut(s)	645, 752
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	667
BsaJI	CCNNGG	4 cut(s)	195, 292, 331, 668
BsaWI	WCCGGW	1 cut(s)	749
BsaXI	ACNNNNNCTCC	3 cut(s)	631, 661, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 516
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	324, 669
BseDI	CCNNGG	4 cut(s)	195, 292, 331, 668
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	323, 516
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	2 cut(s)	199, 335
BsiHKAI	GWGCWC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	510, 750
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	323, 516
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	667
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	184, 738
Bsp143I	GATC	2 cut(s)	277, 697
Bsp1720I	GCTNAGC	1 cut(s)	632
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	645
BspLI	GGNNCC	6 cut(s)	201, 290, 337, 592, 648, 690
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	199, 335
BspTNI	GGTCTC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	195, 292, 331, 668
BssMI	GATC	2 cut(s)	277, 697
BssT1I	CCWWGG	3 cut(s)	195, 292, 331
Bst2UI	CCWGG	2 cut(s)	324, 669
Bst4CI	ACNGT	2 cut(s)	191, 545
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	730
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	280, 700
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	2 cut(s)	277, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	324, 669
BstSCI	CCNGG	2 cut(s)	322, 667
BstSFI	CTRYAG	2 cut(s)	187, 342
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	3 cut(s)	222, 338, 506
BsuRI	GGCC	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	196, 738
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	200, 727
CviAII	CATG	4 cut(s)	293, 398, 461, 760
CviQI	GTAC	2 cut(s)	200, 727
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	2 cut(s)	279, 699
DpnII	GATC	2 cut(s)	277, 697
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	195, 292, 331
Eco24I	GRGCYC	2 cut(s)	184, 738
Eco31I	GGTCTC	1 cut(s)	667
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	775
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	322, 667
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	3 cut(s)	195, 292, 331
EcoT38I	GRGCYC	2 cut(s)	184, 738
ErhI	CCWWGG	3 cut(s)	195, 292, 331
FaeI	CATG	4 cut(s)	296, 401, 464, 763
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	292, 397, 460, 759
Fnu4HI	GCNGC	1 cut(s)	345
FriOI	GRGCYC	2 cut(s)	184, 738
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	390, 575
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	2 cut(s)	510, 750
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	296, 401, 464, 763
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	2 cut(s)	131, 297
HpaII	CCGG	2 cut(s)	510, 750
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	100, 706
Hpy188III	TCNNGA	4 cut(s)	364, 619, 650, 695
HpyAV	CCTTC	3 cut(s)	88, 239, 529
HpyCH4III	ACNGT	2 cut(s)	191, 545
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	65, 122, 344, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	296, 401, 464, 763
HspAI	GCGC	1 cut(s)	347
KpnI	GGTACC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	277, 697
LmnI	GCTCC	5 cut(s)	325, 590, 652, 752, 786
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	645, 752
MaeI	CTAG	2 cut(s)	390, 575
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	2 cut(s)	279, 699
MboI	GATC	2 cut(s)	277, 697
MboII	GAAGA	2 cut(s)	87, 272
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	184, 738
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	5 cut(s)	256, 314, 349, 532, 702
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	465
MspI	CCGG	2 cut(s)	510, 750
MspR9I	CCNGG	2 cut(s)	324, 669
MunI	CAATTG	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	324, 669
MwoI	GCNNNNNNNGC	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	2 cut(s)	277, 697
NlaIII	CATG	4 cut(s)	296, 401, 464, 763
NlaIV	GGNNCC	6 cut(s)	201, 290, 337, 592, 648, 690
PfeI	GAWTC	2 cut(s)	131, 297
PkrI	GCNGC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	730
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	322, 667
PspGI	CCWGG	2 cut(s)	322, 667
PspN4I	GGNNCC	6 cut(s)	201, 290, 337, 592, 648, 690
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	201, 728
RsaNI	GTAC	2 cut(s)	200, 727
RseI	CAYNNNNRTG	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	277, 697
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	324, 669
SduI	GDGCHC	2 cut(s)	184, 738
SfaNI	GCATC	2 cut(s)	645, 752
SfcI	CTRYAG	2 cut(s)	187, 342
SmiMI	CAYNNNNRTG	1 cut(s)	465
SspMI	CTAG	2 cut(s)	390, 575
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	322, 667
StyI	CCWWGG	3 cut(s)	195, 292, 331
TaaI	ACNGT	2 cut(s)	191, 545
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	131, 297
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	196, 745
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	735
TspRI	CASTG	2 cut(s)	196, 745
XapI	RAATTY	2 cut(s)	413, 774
XspI	CTAG	2 cut(s)	390, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.