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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53180 AT1G53180 AT1G53180 AT3G15115 |
| fragaria_vesca | FvH4_3g19190 |
| malus_domestica | MD03G1235500.v1.1 MD11G1256500.v1.1 |
| prunus_persica | Prupe.4G173500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0032271 |
| rosa_laevigata | RLG00000033376 |
| rosa_multiflora | Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048190 |
| rosa_rugosa | Rorug05G0130200 |
| rosa_samantha | Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400 |
| rosa_wichuraiana | Rw5G020440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 947 |
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccII | CGCG | 1 cut(s) | 459 |
| AciI | CCGC | 3 cut(s) | 243, 428, 457 |
| AclI | AACGTT | 1 cut(s) | 890 |
| AclWI | GGATC | 7 cut(s) | 12, 107, 253, 364, 403, 745, 1029 |
| AcvI | CACGTG | 1 cut(s) | 959 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 353 |
| AflII | CTTAAG | 1 cut(s) | 94 |
| AflIII | ACRYGT | 2 cut(s) | 334, 958 |
| AgsI | TTSAA | 7 cut(s) | 18, 293, 383, 716, 795, 923, 1005 |
| AjnI | CCWGG | 2 cut(s) | 532, 762 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 41, 73 |
| AluBI | AGCT | 7 cut(s) | 191, 259, 389, 484, 825, 977, 1052 |
| AluI | AGCT | 7 cut(s) | 191, 259, 389, 484, 825, 977, 1052 |
| Alw26I | GTCTC | 3 cut(s) | 295, 567, 805 |
| AlwI | GGATC | 7 cut(s) | 12, 107, 253, 364, 403, 745, 1029 |
| Ama87I | CYCGRG | 2 cut(s) | 570, 1041 |
| AoxI | GGCC | 2 cut(s) | 265, 530 |
| ApeKI | GCWGC | 2 cut(s) | 880, 897 |
| AspA2I | CCTAGG | 1 cut(s) | 986 |
| AspS9I | GGNCC | 2 cut(s) | 265, 454 |
| AsuC2I | CCSGG | 2 cut(s) | 372, 413 |
| AsuHPI | GGTGA | 1 cut(s) | 548 |
| AvaI | CYCGRG | 2 cut(s) | 570, 1041 |
| AvaII | GGWCC | 1 cut(s) | 454 |
| AvrII | CCTAGG | 1 cut(s) | 986 |
| BaeGI | GKGCMC | 1 cut(s) | 418 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 1 cut(s) | 1042 |
| BbrPI | CACGTG | 1 cut(s) | 959 |
| BbsI | GAAGAC | 3 cut(s) | 306, 711, 843 |
| BbvI | GCAGC | 2 cut(s) | 867, 909 |
| BccI | CCATC | 1 cut(s) | 445 |
| BceAI | ACGGC | 1 cut(s) | 1031 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1053 |
| BciT130I | CCWGG | 2 cut(s) | 534, 764 |
| BclI | TGATCA | 1 cut(s) | 474 |
| BcnI | CCSGG | 2 cut(s) | 372, 413 |
| BcoDI | GTCTC | 3 cut(s) | 295, 567, 805 |
| BfaI | CTAG | 5 cut(s) | 185, 518, 597, 768, 987 |
| BfmI | CTRYAG | 1 cut(s) | 225 |
| BfrI | CTTAAG | 1 cut(s) | 94 |
| BisI | GCNGC | 3 cut(s) | 428, 881, 898 |
| BlnI | CCTAGG | 1 cut(s) | 986 |
| BlsI | GCNGC | 3 cut(s) | 429, 882, 899 |
| Bme1390I | CCNGG | 4 cut(s) | 372, 413, 534, 764 |
| Bme18I | GGWCC | 1 cut(s) | 454 |
| BmeT110I | CYCGRG | 2 cut(s) | 570, 1041 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 454 |
| BmiI | GGNNCC | 3 cut(s) | 369, 417, 993 |
| BmrFI | CCNGG | 4 cut(s) | 372, 413, 534, 764 |
| BmsI | GCATC | 2 cut(s) | 227, 657 |
| BpiI | GAAGAC | 3 cut(s) | 306, 711, 843 |
| BpuEI | CTTGAG | 4 cut(s) | 65, 718, 847, 850 |
| BpuMI | CCSGG | 2 cut(s) | 372, 413 |
| BsaAI | YACGTR | 1 cut(s) | 959 |
| BsaI | GGTCTC | 1 cut(s) | 805 |
| BsaJI | CCNNGG | 3 cut(s) | 371, 762, 986 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 353 |
| Bse118I | RCCGGY | 1 cut(s) | 267 |
| Bse1I | ACTGG | 2 cut(s) | 59, 951 |
| BseBI | CCWGG | 2 cut(s) | 534, 764 |
| BseDI | CCNNGG | 3 cut(s) | 371, 762, 986 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 353 |
| BseMII | CTCAG | 4 cut(s) | 123, 263, 446, 492 |
| BseNI | ACTGG | 2 cut(s) | 59, 951 |
| BseSI | GKGCMC | 1 cut(s) | 418 |
| BseXI | GCAGC | 2 cut(s) | 867, 909 |
| Bsh1236I | CGCG | 1 cut(s) | 459 |
| BshFI | GGCC | 2 cut(s) | 267, 532 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BsiHKCI | CYCGRG | 2 cut(s) | 570, 1041 |
| BsiSI | CCGG | 3 cut(s) | 268, 371, 412 |
| BslFI | GGGAC | 1 cut(s) | 855 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 353 |
| BsmAI | GTCTC | 3 cut(s) | 295, 567, 805 |
| BsmFI | GGGAC | 1 cut(s) | 855 |
| BsnI | GGCC | 2 cut(s) | 267, 532 |
| Bso31I | GGTCTC | 1 cut(s) | 805 |
| BsoBI | CYCGRG | 2 cut(s) | 570, 1041 |
| Bsp1286I | GDGCHC | 2 cut(s) | 418, 1042 |
| BspACI | CCGC | 3 cut(s) | 243, 428, 457 |
| BspANI | GGCC | 2 cut(s) | 267, 532 |
| BspCNI | CTCAG | 4 cut(s) | 122, 262, 445, 493 |
| BspFNI | CGCG | 1 cut(s) | 459 |
| BspLI | GGNNCC | 3 cut(s) | 369, 417, 993 |
| BspPI | GGATC | 7 cut(s) | 12, 107, 253, 364, 403, 745, 1029 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BspTI | CTTAAG | 1 cut(s) | 94 |
| BspTNI | GGTCTC | 1 cut(s) | 805 |
| BsrFI | RCCGGY | 1 cut(s) | 267 |
| BsrI | ACTGG | 2 cut(s) | 59, 951 |
| BssAI | RCCGGY | 1 cut(s) | 267 |
| BssECI | CCNNGG | 3 cut(s) | 371, 762, 986 |
| BssT1I | CCWWGG | 1 cut(s) | 986 |
| Bst2UI | CCWGG | 2 cut(s) | 534, 764 |
| Bst6I | CTCTTC | 2 cut(s) | 130, 679 |
| BstAFI | CTTAAG | 1 cut(s) | 94 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 547 |
| BstBAI | YACGTR | 1 cut(s) | 959 |
| BstDEI | CTNAG | 4 cut(s) | 109, 249, 432, 501 |
| BstFNI | CGCG | 1 cut(s) | 459 |
| BstMAI | GTCTC | 3 cut(s) | 295, 567, 805 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 490, 538, 547 |
| BstNI | CCWGG | 2 cut(s) | 534, 764 |
| BstNSI | RCATGY | 1 cut(s) | 338 |
| BstSCI | CCNGG | 4 cut(s) | 370, 411, 532, 762 |
| BstSFI | CTRYAG | 1 cut(s) | 225 |
| BstSLI | GKGCMC | 1 cut(s) | 418 |
| BstUI | CGCG | 1 cut(s) | 459 |
| BstV1I | GCAGC | 2 cut(s) | 867, 909 |
| BstV2I | GAAGAC | 3 cut(s) | 306, 711, 843 |
| BstX2I | RGATCY | 3 cut(s) | 112, 245, 356 |
| BstYI | RGATCY | 3 cut(s) | 112, 245, 356 |
| BsuRI | GGCC | 2 cut(s) | 267, 532 |
| BtsI | GCAGTG | 1 cut(s) | 840 |
| BtsIMutI | CAGTG | 1 cut(s) | 840 |
| Cfr10I | RCCGGY | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 454 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 841, 876 |
| CviAII | CATG | 3 cut(s) | 8, 335, 679 |
| DdeI | CTNAG | 4 cut(s) | 109, 249, 432, 501 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 947 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 947 |
| Eam1104I | CTCTTC | 2 cut(s) | 130, 679 |
| EarI | CTCTTC | 2 cut(s) | 130, 679 |
| EciI | GGCGGA | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 1 cut(s) | 986 |
| Eco147I | AGGCCT | 1 cut(s) | 532 |
| Eco24I | GRGCYC | 1 cut(s) | 1042 |
| Eco31I | GGTCTC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 1 cut(s) | 454 |
| Eco72I | CACGTG | 1 cut(s) | 959 |
| Eco88I | CYCGRG | 2 cut(s) | 570, 1041 |
| EcoRII | CCWGG | 2 cut(s) | 532, 762 |
| EcoT14I | CCWWGG | 1 cut(s) | 986 |
| EcoT38I | GRGCYC | 1 cut(s) | 1042 |
| ErhI | CCWWGG | 1 cut(s) | 986 |
| FaeI | CATG | 3 cut(s) | 11, 338, 682 |
| FaiI | YATR | 8 cut(s) | 9, 227, 336, 630, 680, 780, 848, 939 |
| FaqI | GGGAC | 1 cut(s) | 855 |
| FatI | CATG | 3 cut(s) | 7, 334, 678 |
| FbaI | TGATCA | 1 cut(s) | 474 |
| Fnu4HI | GCNGC | 3 cut(s) | 428, 881, 898 |
| FriOI | GRGCYC | 1 cut(s) | 1042 |
| Fsp4HI | GCNGC | 3 cut(s) | 428, 881, 898 |
| FspBI | CTAG | 5 cut(s) | 185, 518, 597, 768, 987 |
| GluI | GCNGC | 3 cut(s) | 428, 881, 898 |
| HaeIII | GGCC | 2 cut(s) | 267, 532 |
| HapII | CCGG | 3 cut(s) | 268, 371, 412 |
| Hin1II | CATG | 3 cut(s) | 11, 338, 682 |
| HindIII | AAGCTT | 3 cut(s) | 189, 387, 823 |
| HinfI | GANTC | 6 cut(s) | 164, 379, 731, 744, 919, 1001 |
| HpaII | CCGG | 3 cut(s) | 268, 371, 412 |
| HphI | GGTGA | 1 cut(s) | 548 |
| Hpy166II | GTNNAC | 1 cut(s) | 773 |
| Hpy188I | TCNGA | 8 cut(s) | 112, 169, 252, 277, 435, 502, 1026, 1064 |
| Hpy8I | GTNNAC | 1 cut(s) | 773 |
| Hpy99I | CGWCG | 1 cut(s) | 529 |
| HpyAV | CCTTC | 6 cut(s) | 75, 172, 233, 322, 429, 1012 |
| HpyCH4IV | ACGT | 3 cut(s) | 400, 890, 958 |
| HpyCH4V | TGCA | 3 cut(s) | 322, 550, 652 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 490, 538, 547 |
| HpyF3I | CTNAG | 4 cut(s) | 109, 249, 432, 501 |
| HpySE526I | ACGT | 3 cut(s) | 400, 890, 958 |
| Hsp92II | CATG | 3 cut(s) | 11, 338, 682 |
| Ksp22I | TGATCA | 1 cut(s) | 474 |
| LmnI | GCTCC | 1 cut(s) | 373 |
| Lsp1109I | GCAGC | 2 cut(s) | 867, 909 |
| LweI | GCATC | 2 cut(s) | 227, 657 |
| MaeI | CTAG | 5 cut(s) | 185, 518, 597, 768, 987 |
| MaeII | ACGT | 3 cut(s) | 400, 890, 958 |
| MaeIII | GTNAC | 2 cut(s) | 24, 104 |
| MflI | RGATCY | 3 cut(s) | 112, 245, 356 |
| MhlI | GDGCHC | 2 cut(s) | 418, 1042 |
| MlyI | GAGTC | 1 cut(s) | 725 |
| MnlI | CCTC | 7 cut(s) | 40, 83, 133, 441, 454, 522, 694 |
| MseI | TTAA | 3 cut(s) | 95, 209, 893 |
| MslI | CAYNNNNRTG | 1 cut(s) | 845 |
| MspCI | CTTAAG | 1 cut(s) | 94 |
| MspI | CCGG | 3 cut(s) | 268, 371, 412 |
| MspR9I | CCNGG | 4 cut(s) | 372, 413, 534, 764 |
| MvaI | CCWGG | 2 cut(s) | 534, 764 |
| MvnI | CGCG | 1 cut(s) | 459 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 490, 538, 547 |
| NciI | CCSGG | 2 cut(s) | 372, 413 |
| NlaIII | CATG | 3 cut(s) | 11, 338, 682 |
| NlaIV | GGNNCC | 3 cut(s) | 369, 417, 993 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 338 |
| PaeR7I | CTCGAG | 2 cut(s) | 570, 1041 |
| PceI | AGGCCT | 1 cut(s) | 532 |
| PciI | ACATGT | 1 cut(s) | 334 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 705 |
| PfeI | GAWTC | 5 cut(s) | 164, 379, 744, 919, 1001 |
| PkrI | GCNGC | 3 cut(s) | 429, 882, 899 |
| PleI | GAGTC | 1 cut(s) | 725 |
| PmaCI | CACGTG | 1 cut(s) | 959 |
| PmlI | CACGTG | 1 cut(s) | 959 |
| PpsI | GAGTC | 1 cut(s) | 725 |
| Ppu21I | YACGTR | 1 cut(s) | 959 |
| PscI | ACATGT | 1 cut(s) | 334 |
| Psp1406I | AACGTT | 1 cut(s) | 890 |
| Psp6I | CCWGG | 2 cut(s) | 532, 762 |
| PspCI | CACGTG | 1 cut(s) | 959 |
| PspGI | CCWGG | 2 cut(s) | 532, 762 |
| PspN4I | GGNNCC | 3 cut(s) | 369, 417, 993 |
| PspPI | GGNCC | 2 cut(s) | 265, 454 |
| PspXI | VCTCGAGB | 1 cut(s) | 1041 |
| PsuI | RGATCY | 3 cut(s) | 112, 245, 356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 845 |
| SaqAI | TTAA | 3 cut(s) | 95, 209, 893 |
| SatI | GCNGC | 3 cut(s) | 428, 881, 898 |
| Sau96I | GGNCC | 2 cut(s) | 265, 454 |
| SchI | GAGTC | 1 cut(s) | 725 |
| ScrFI | CCNGG | 4 cut(s) | 372, 413, 534, 764 |
| SduI | GDGCHC | 2 cut(s) | 418, 1042 |
| SfaNI | GCATC | 2 cut(s) | 227, 657 |
| SfcI | CTRYAG | 1 cut(s) | 225 |
| Sfr274I | CTCGAG | 2 cut(s) | 570, 1041 |
| SinI | GGWCC | 1 cut(s) | 454 |
| SlaI | CTCGAG | 2 cut(s) | 570, 1041 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 845 |
| SmlI | CTYRAG | 7 cut(s) | 44, 94, 570, 733, 826, 865, 1041 |
| SmoI | CTYRAG | 7 cut(s) | 44, 94, 570, 733, 826, 865, 1041 |
| SseBI | AGGCCT | 1 cut(s) | 532 |
| SsiI | CCGC | 3 cut(s) | 243, 428, 457 |
| SspMI | CTAG | 5 cut(s) | 185, 518, 597, 768, 987 |
| StuI | AGGCCT | 1 cut(s) | 532 |
| StyD4I | CCNGG | 4 cut(s) | 370, 411, 532, 762 |
| StyI | CCWWGG | 1 cut(s) | 986 |
| TaiI | ACGT | 3 cut(s) | 403, 893, 961 |
| TaqI | TCGA | 5 cut(s) | 86, 140, 571, 951, 1042 |
| TauI | GCSGC | 1 cut(s) | 430 |
| TfiI | GAWTC | 5 cut(s) | 164, 379, 744, 919, 1001 |
| Tru1I | TTAA | 3 cut(s) | 95, 209, 893 |
| Tru9I | TTAA | 3 cut(s) | 95, 209, 893 |
| TscAI | CASTG | 1 cut(s) | 847 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 880, 897 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 1 cut(s) | 1031 |
| TspGWI | ACGGA | 1 cut(s) | 743 |
| TspRI | CASTG | 1 cut(s) | 847 |
| Vha464I | CTTAAG | 1 cut(s) | 94 |
| VpaK11BI | GGWCC | 1 cut(s) | 454 |
| XbaI | TCTAGA | 3 cut(s) | 184, 517, 596 |
| XceI | RCATGY | 1 cut(s) | 338 |
| XhoI | CTCGAG | 2 cut(s) | 570, 1041 |
| XmaJI | CCTAGG | 1 cut(s) | 986 |
| XspI | CTAG | 5 cut(s) | 185, 518, 597, 768, 987 |