Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Reverse (-)

5085992 .. 5087496

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15115.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATTCTACTTCGAATGATCATCAAGAGTTGGAACAATTCGAAGCCATTGATGATCTCCTCGAAGATTTCTGGTTCTTTGATAACTTACTTGACAGAAGATCAAGGATCTTGAGGTACTGTCATTCAGATCCTTACCCTTTTACTTCTTCTTCTTCTTCAACTTGTCCCAAACCCGAATTACCGAAAATTGGAGATTCGGATTCGGAGATTAAGCTTCTAGAAGCTTCTACTGGGGGAGACTTTGTTCCGCCGCCGTGTATAGAGAAAAAAGAAGGCGGAGGCGAGCCTGAGAAGATAAATAAGGTGATGAGAAGGCAGTTCTCTGAGAAGACTAGGGTTCAAGAACGAAGAACTTACTTGCAAAAGAAGGAACCTGTAGTTCGAGAGAAGGGAATTAAAGAAGGTTCGAGGAAGAAGAACAGAACAAGAATTAGTTGTAGTAACAATAATAGTGTCCAGAGTTGCTCGATGGGAGGGAGTTTGCAGAGAACTCAGACTTTGCCTAGTTACTTAGGAAGAGAAGACGATGTAAATGAGTTTCAAGATCAAGAGATTGATGATTCAAGAATGGGATTTTTGATCCGTGAAGCCATCGCTAACTCTTCTTCTTCTTCTTCTTCTGGATTTACTCCAACGAAACAGAACATTCCAAAGGTTTCATGCATTCCAAGGCATAGACCACCTAGAAACTCAAGATCAGAAGACGCTATTCAAGAATTGGTCGTCAAATCACAAAAAAGCCCAAACCGCAAAACGCTGCGTAAAACGTTAAGCAGCATCGAGACGAAAGATATTCAAATGTTGAAGGATTTTCACATTGAAACAGAGAAGAAGCAAGAAGAAGACGAAGAAAAACAGAGGAAGGTCCCATGCACCACCACTGGGAAAAACCGGTCTACAGCGGTGGTGGGACAGCCGATTCCGGTTTGGGTTCCAAAGGATTCGAGAAAAGACATGAAAGCTCAGATAAAGTTTTGGGCTCGAACCGTCGCAAGTAATGTTCGACAAGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

339

Amino Acids

38.77

Weight (kDa)

8.89

Isoelectric Point (pI)

71.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	5 cut(s)	251, 254, 279, 751, 905
AclI	AACGTT	1 cut(s)	770
AclWI	GGATC	3 cut(s)	116, 125, 577
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	191, 885
AgeI	ACCGGT	1 cut(s)	894
AgsI	TTSAA	8 cut(s)	162, 344, 545, 567, 716, 800, 808, 824
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	217, 227, 965
AluI	AGCT	3 cut(s)	217, 227, 965
Alw26I	GTCTC	2 cut(s)	234, 779
AlwI	GGATC	3 cut(s)	116, 125, 577
ApeKI	GCWGC	2 cut(s)	760, 777
AsiGI	ACCGGT	1 cut(s)	894
AspS9I	GGNCC	1 cut(s)	868
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	2 cut(s)	14, 42
AvaII	GGWCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	985
BbsI	GAAGAC	4 cut(s)	338, 531, 711, 852
BbvI	GCAGC	2 cut(s)	747, 789
BccI	CCATC	2 cut(s)	466, 602
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	1 cut(s)	996
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	234, 779
BfaI	CTAG	4 cut(s)	221, 336, 507, 687
BfmI	CTRYAG	2 cut(s)	378, 900
BisI	GCNGC	3 cut(s)	254, 761, 778
BlsI	GCNGC	3 cut(s)	255, 762, 779
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	3 cut(s)	375, 870, 936
BmrI	ACTGGG	2 cut(s)	243, 894
BmsI	GCATC	1 cut(s)	789
BmuI	ACTGGG	2 cut(s)	243, 894
BpiI	GAAGAC	4 cut(s)	338, 531, 711, 852
Bpu14I	TTCGAA	2 cut(s)	14, 42
BpuEI	CTTGAG	2 cut(s)	133, 679
BsaJI	CCNNGG	1 cut(s)	671
BsaWI	WCCGGW	2 cut(s)	894, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 885
Bse118I	RCCGGY	1 cut(s)	894
Bse1I	ACTGG	2 cut(s)	238, 889
BseDI	CCNNGG	1 cut(s)	671
BseLI	CCNNNNNNNGG	2 cut(s)	191, 885
BseMII	CTCAG	4 cut(s)	282, 318, 509, 980
BseNI	ACTGG	2 cut(s)	238, 889
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	747, 789
BshTI	ACCGGT	1 cut(s)	894
BsiSI	CCGG	2 cut(s)	895, 926
BslFI	GGGAC	3 cut(s)	153, 854, 927
BslI	CCNNNNNNNGG	2 cut(s)	191, 885
BsmAI	GTCTC	2 cut(s)	234, 779
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	3 cut(s)	153, 854, 927
BsmI	GAATGC	2 cut(s)	666, 1019
Bsp119I	TTCGAA	2 cut(s)	14, 42
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
BspACI	CCGC	5 cut(s)	251, 254, 279, 751, 905
BspCNI	CTCAG	4 cut(s)	283, 319, 508, 979
BspLI	GGNNCC	3 cut(s)	375, 870, 936
BspPI	GGATC	3 cut(s)	116, 125, 577
BspT104I	TTCGAA	2 cut(s)	14, 42
BsrFI	RCCGGY	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	238, 889
BssAI	RCCGGY	1 cut(s)	894
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
BssT1I	CCWWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	122, 991
Bst6I	CTCTTC	2 cut(s)	514, 610
BstBI	TTCGAA	2 cut(s)	14, 42
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	291, 327, 495, 514, 966
BstKTI	GATC	8 cut(s)	22, 58, 104, 111, 133, 550, 585, 701
BstMAI	GTCTC	2 cut(s)	234, 779
BstMBI	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
BstMWI	GCNNNNNNNGC	1 cut(s)	750
BstSFI	CTRYAG	2 cut(s)	378, 900
BstV1I	GCAGC	2 cut(s)	747, 789
BstV2I	GAAGAC	4 cut(s)	338, 531, 711, 852
BstX2I	RGATCY	2 cut(s)	108, 130
BstYI	RGATCY	2 cut(s)	108, 130
BtgZI	GCGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	882
Cac8I	GCNNGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	894
Cfr13I	GGNCC	1 cut(s)	868
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	894
CviAII	CATG	3 cut(s)	663, 873, 958
CviJI	RGCY	9 cut(s)	47, 217, 227, 289, 593, 744, 919, 965, 983
CviKI_1	RGCY	9 cut(s)	47, 217, 227, 289, 593, 744, 919, 965, 983
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	5 cut(s)	291, 327, 495, 514, 966
DpnI	GATC	8 cut(s)	21, 57, 103, 110, 132, 549, 584, 700
DpnII	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
Eam1104I	CTCTTC	2 cut(s)	514, 610
EarI	CTCTTC	2 cut(s)	514, 610
EciI	GGCGGA	2 cut(s)	240, 294
Eco130I	CCWWGG	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	985
Eco47I	GGWCC	1 cut(s)	868
EcoO109I	RGGNCCY	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	671
EcoT22I	ATGCAT	1 cut(s)	668
EcoT38I	GRGCYC	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	671
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	3 cut(s)	666, 876, 961
FaiI	YATR	5 cut(s)	263, 664, 678, 874, 959
FaqI	GGGAC	3 cut(s)	153, 854, 927
FatI	CATG	3 cut(s)	662, 872, 957
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	3 cut(s)	254, 761, 778
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	3 cut(s)	254, 761, 778
FspBI	CTAG	4 cut(s)	221, 336, 507, 687
GluI	GCNGC	3 cut(s)	254, 761, 778
HapII	CCGG	2 cut(s)	895, 926
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	3 cut(s)	666, 876, 961
HindIII	AAGCTT	2 cut(s)	215, 225
HinfI	GANTC	6 cut(s)	5, 197, 203, 563, 922, 944
HpaII	CCGG	2 cut(s)	895, 926
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	7 cut(s)	130, 202, 208, 328, 498, 703, 969
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	7 cut(s)	269, 309, 364, 385, 398, 802, 859
HpyCH4III	ACNGT	2 cut(s)	122, 991
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	4 cut(s)	364, 487, 666, 876
HpyF10VI	GCNNNNNNNGC	1 cut(s)	750
HpyF3I	CTNAG	5 cut(s)	291, 327, 495, 514, 966
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	3 cut(s)	666, 876, 961
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
LpnPI	CCDG	9 cut(s)	58, 219, 303, 390, 473, 609, 870, 908, 939
Lsp1109I	GCAGC	2 cut(s)	747, 789
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	4 cut(s)	221, 336, 507, 687
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	2 cut(s)	443, 509
MalI	GATC	8 cut(s)	21, 57, 103, 110, 132, 549, 584, 700
MboI	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
MflI	RGATCY	2 cut(s)	108, 130
MhlI	GDGCHC	1 cut(s)	985
MluCI	AATT	6 cut(s)	38, 179, 189, 396, 432, 719
MmeI	TCCRAC	2 cut(s)	12, 659
MnlI	CCTC	6 cut(s)	71, 108, 275, 405, 470, 855
Mph1103I	ATGCAT	1 cut(s)	668
MseI	TTAA	3 cut(s)	213, 399, 773
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	895, 926
Mva1269I	GAATGC	2 cut(s)	666, 1019
MwoI	GCNNNNNNNGC	1 cut(s)	750
NdeII	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
NlaIII	CATG	3 cut(s)	666, 876, 961
NlaIV	GGNNCC	3 cut(s)	375, 870, 936
NsiI	ATGCAT	1 cut(s)	668
NspV	TTCGAA	2 cut(s)	14, 42
PctI	GAATGC	2 cut(s)	666, 1019
PfeI	GAWTC	6 cut(s)	5, 197, 203, 563, 922, 944
PinAI	ACCGGT	1 cut(s)	894
PkrI	GCNGC	3 cut(s)	255, 762, 779
PpuMI	RGGWCCY	1 cut(s)	868
Psp1406I	AACGTT	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	868
PspN4I	GGNNCC	3 cut(s)	375, 870, 936
PspPI	GGNCC	1 cut(s)	868
PspPPI	RGGWCCY	1 cut(s)	868
PsuI	RGATCY	2 cut(s)	108, 130
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	213, 399, 773
SatI	GCNGC	3 cut(s)	254, 761, 778
Sau3AI	GATC	8 cut(s)	19, 55, 101, 108, 130, 547, 582, 698
Sau96I	GGNCC	1 cut(s)	868
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	2 cut(s)	378, 900
SfuI	TTCGAA	2 cut(s)	14, 42
SinI	GGWCC	1 cut(s)	868
SmlI	CTYRAG	2 cut(s)	112, 694
SmoI	CTYRAG	2 cut(s)	112, 694
Sse9I	AATT	6 cut(s)	38, 179, 189, 396, 432, 719
SsiI	CCGC	5 cut(s)	251, 254, 279, 751, 905
SspMI	CTAG	4 cut(s)	221, 336, 507, 687
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	122, 991
TaiI	ACGT	1 cut(s)	773
TasI	AATT	6 cut(s)	38, 179, 189, 396, 432, 719
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	6 cut(s)	5, 197, 203, 563, 922, 944
Tru1I	TTAA	3 cut(s)	213, 399, 773
Tru9I	TTAA	3 cut(s)	213, 399, 773
TscAI	CASTG	1 cut(s)	889
TseI	GCWGC	2 cut(s)	760, 777
TspDTI	ATGAA	2 cut(s)	651, 974
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	1 cut(s)	889
VpaK11BI	GGWCC	1 cut(s)	868
XbaI	TCTAGA	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	899
XspI	CTAG	4 cut(s)	221, 336, 507, 687
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.