Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000013.1

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Forward (+)

4048 .. 4526

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000013.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

atggagcctattgatgatgaaccttttgaggcatcctcaagtaagaaccacaaagtagaagccaatgatcttttggaagagtgttggttctttgacaacttgctcatcagaaagcagaggatgttgaggtgttattctgatcctggttgcccttcatcatcaagctttggtcaagaaatgttggtgaagaactcagaggccaagaactccttggttcgaacaccgtctttgccacttcaagtagggagaggagagaaagttgagcaagcagtgaaacagagtactccaaagaagagtatgagcaaattgactcggcagacatcacatcagaaagtgctgcagacaccaaccaaatcaccaccttgtgtaagcacgaaagaagaagttcaagacagagagaggagtgatagtagaagaagcaaatcaaatgggcaatcggtgcagcgcagtttgctaaggacaccatcattgccaccgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

159

Amino Acids

17.95

Weight (kDa)

9.27

Isoelectric Point (pI)

73.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	239, 389
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	337, 442
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	196, 348
AsuII	TTCGAA	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	324, 454
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	338, 443
BlsI	GCNGC	2 cut(s)	339, 444
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 394, 424
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	32, 126
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	264, 415
BseXI	GCAGC	2 cut(s)	324, 454
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	67, 139
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	67, 139
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	225, 477
Bst6I	CTCTTC	2 cut(s)	72, 287
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	193, 455
BstF5I	GGATG	2 cut(s)	32, 126
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	2 cut(s)	70, 142
BstMBI	GATC	2 cut(s)	67, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 451
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	324, 454
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	32, 126
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	282
CviJI	RGCY	4 cut(s)	7, 62, 165, 200
CviKI_1	RGCY	4 cut(s)	7, 62, 165, 200
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	193, 455
DpnI	GATC	2 cut(s)	69, 141
DpnII	GATC	2 cut(s)	67, 139
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	72, 287
EarI	CTCTTC	2 cut(s)	72, 287
Eco130I	CCWWGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	1 cut(s)	299
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
Fnu4HI	GCNGC	2 cut(s)	338, 443
FokI	GGATG	2 cut(s)	19, 133
Fsp4HI	GCNGC	2 cut(s)	338, 443
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	2 cut(s)	338, 443
HaeIII	GGCC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	447
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	196, 348
Hpy188I	TCNGA	4 cut(s)	110, 139, 196, 330
Hpy188III	TCNNGA	2 cut(s)	173, 389
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	2 cut(s)	225, 477
HpyCH4V	TGCA	2 cut(s)	340, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 451
HpyF3I	CTNAG	2 cut(s)	193, 455
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	67, 139
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	129, 156
Lsp1109I	GCAGC	2 cut(s)	324, 454
LweI	GCATC	1 cut(s)	41
MalI	GATC	2 cut(s)	69, 141
MboI	GATC	2 cut(s)	67, 139
MboII	GAAGA	5 cut(s)	89, 199, 304, 392, 426
MluCI	AATT	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	7 cut(s)	22, 46, 111, 120, 190, 242, 393
MroXI	GAANNNNTTC	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	439, 451
NdeII	GATC	2 cut(s)	67, 139
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	339, 444
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SatI	GCNGC	2 cut(s)	338, 443
Sau3AI	GATC	2 cut(s)	67, 139
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	4 cut(s)	25, 131, 167, 364
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	225, 477
TaqI	TCGA	1 cut(s)	217
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	281
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	337, 442
TspDTI	ATGAA	2 cut(s)	33, 144
TspRI	CASTG	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 208
XmnI	GAANNNNTTC	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.