Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Forward (+)

32150613 .. 32151851

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1235500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGCCTGTTGGTGATGACCCAAGTAGGAAAGAAGACAACGTGGAAGAAGCCAATGATCTTTTGGAAGAATGTTGGTTTTTTGATAACTTGCTCAACAGGAAACAGAAGATGCTAAGGTGTCTTTCTGATCCTCATAGCAACTCATCAGATTTTGGCCAAGAAATGTCAGTGGAGATGAATAAGGCCACAGAAGGCGGTGGATTTTCCGATCCAAATTTGGTTCGGACACCGTCCTTGCCGCTTCATATAGGGAGGCAGGAGAATGTTCAAGTGAAGCAAAGTGGTGGTAAGAGTGGCGTGAGAAAATTGACAAGGCAAACGTCGCATCAGAAGATGCTGCAGACAACAACGTCCCAACCGCCGGTTTGTATTGGGAGGAGGACAGAAGGAGTTCAGGATAAAGAAAGTGATATCAGAAGAAGTAAAGTAAATGGGCAACCGGTGCGTCACAATTTGCTCAGGACACCCTCCTTGCCACCATGCCTAGGAAGAGAAGAGAGAAACCAAGAAAGTGTTCCACAAAGACACAAGGGGCTCATGACACAATGTTCTAGCATTCCAAGATATAGACCCCCAAAAACCACAGAAGGGGAAAGCAATATGATTAGTACGGATGGAATTAAGGAAATGAGGCGCCGATGCCCTAATCAACTGACGACGAGAAAGAGCCTAAGTGATCTTGAAATTGAAGAACTGCAAGGGTTCAAGGACTTGGGGTTCACATTTGACAAGGAAGAGTTGACCCCTAGTGTGGTGAACATACTTCCTGGGTTGCAAGACAAGAAGAGAAGTGAAGATTTGAACCCGGCACATGTTAGGAGGCCTTATCTTTCTGAGGTGTGGCTGGCGCAAAGCTGCGCAGCCCCGCCACCTCCAAATTTGGGTGCAACTCAGTCTGCTGAAGACATGAAGGCACAGATCAAGTTCTGGGCTAGATCTGTGGCTTCTAATGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

321

Amino Acids

36.07

Weight (kDa)

8.64

Isoelectric Point (pI)

78.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
Acc16I	TGCGCA	1 cut(s)	862
AccB1I	GGYRCC	1 cut(s)	636
AciI	CCGC	4 cut(s)	198, 242, 362, 869
AclWI	GGATC	2 cut(s)	125, 206
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	217, 880
AcuI	CTGAAG	1 cut(s)	924
AcyI	GRCGYC	1 cut(s)	637
AfaI	GTAC	1 cut(s)	613
AfiI	CCNNNNNNNGG	5 cut(s)	364, 488, 591, 754, 884
AflIII	ACRYGT	1 cut(s)	814
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	272, 686, 692, 709, 805
AjnI	CCWGG	1 cut(s)	769
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AloI	GAACNNNNNNTCC	2 cut(s)	704, 736
AluBI	AGCT	1 cut(s)	858
AluI	AGCT	1 cut(s)	858
AlwI	GGATC	2 cut(s)	125, 206
AoxI	GGCC	3 cut(s)	157, 186, 824
ApeKI	GCWGC	3 cut(s)	340, 858, 863
ApoI	RAATTY	2 cut(s)	217, 880
AsiGI	ACCGGT	1 cut(s)	442
Asp700I	GAANNNNTTC	2 cut(s)	393, 516
AspA2I	CCTAGG	1 cut(s)	487
AspLEI	GCGC	4 cut(s)	639, 853, 863, 960
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	26, 769
AvrII	CCTAGG	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	42, 912
BbvI	GCAGC	3 cut(s)	327, 845, 875
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	809
BfaI	CTAG	5 cut(s)	488, 555, 750, 936, 961
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	640
BglII	AGATCT	1 cut(s)	938
BisI	GCNGC	4 cut(s)	242, 341, 859, 864
BlnI	CCTAGG	1 cut(s)	487
BlsI	GCNGC	4 cut(s)	243, 342, 860, 865
Bme1390I	CCNGG	2 cut(s)	771, 809
BmiI	GGNNCC	2 cut(s)	6, 638
BmrFI	CCNGG	2 cut(s)	771, 809
BmsI	GCATC	4 cut(s)	102, 327, 337, 632
BpiI	GAAGAC	2 cut(s)	42, 912
Bpu10I	CCTNAGC	2 cut(s)	116, 461
BpuMI	CCSGG	1 cut(s)	809
BsaHI	GRCGYC	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	487, 770
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	5 cut(s)	364, 488, 591, 754, 884
Bse118I	RCCGGY	2 cut(s)	364, 442
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	2 cut(s)	487, 770
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	5 cut(s)	364, 488, 591, 754, 884
BseMII	CTCAG	3 cut(s)	475, 828, 908
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	327, 845, 875
BshFI	GGCC	3 cut(s)	159, 188, 826
BshNI	GGYRCC	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	442
BsiSI	CCGG	3 cut(s)	365, 443, 809
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	5 cut(s)	364, 488, 591, 754, 884
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	3 cut(s)	159, 188, 826
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
BspACI	CCGC	4 cut(s)	198, 242, 362, 869
BspANI	GGCC	3 cut(s)	159, 188, 826
BspCNI	CTCAG	3 cut(s)	474, 829, 907
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	6, 638
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	2 cut(s)	125, 206
BspT107I	GGYRCC	1 cut(s)	636
BsrFI	RCCGGY	2 cut(s)	364, 442
BssAI	RCCGGY	2 cut(s)	364, 442
BssECI	CCNNGG	2 cut(s)	487, 770
BssMI	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
BssNI	GRCGYC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	4 cut(s)	487, 492, 732, 782
BstACI	GRCGYC	1 cut(s)	637
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	5 cut(s)	116, 461, 674, 837, 894
BstF5I	GGATG	1 cut(s)	622
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	4 cut(s)	639, 853, 863, 960
BstKTI	GATC	6 cut(s)	61, 133, 214, 682, 924, 941
BstMBI	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 445
BstNI	CCWGG	1 cut(s)	771
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	2 cut(s)	769, 807
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	327, 845, 875
BstV2I	GAAGAC	2 cut(s)	42, 912
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	3 cut(s)	159, 188, 826
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	849
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	4 cut(s)	639, 853, 863, 960
Cfr10I	RCCGGY	2 cut(s)	364, 442
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	612
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	4 cut(s)	483, 541, 815, 910
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	5 cut(s)	116, 461, 674, 837, 894
DinI	GGCGCC	1 cut(s)	638
DpnI	GATC	6 cut(s)	60, 132, 213, 681, 923, 940
DpnII	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	487, 492, 732, 782
EarI	CTCTTC	4 cut(s)	487, 492, 732, 782
Eco130I	CCWWGG	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	924
EcoRII	CCWGG	1 cut(s)	769
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	638
EheI	GGCGCC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	486, 544, 818, 913
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	4 cut(s)	482, 540, 814, 909
FauI	CCCGC	1 cut(s)	876
Fnu4HI	GCNGC	4 cut(s)	242, 341, 859, 864
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	4 cut(s)	242, 341, 859, 864
FspBI	CTAG	5 cut(s)	488, 555, 750, 936, 961
FspI	TGCGCA	1 cut(s)	862
GlaI	GCGC	4 cut(s)	638, 852, 862, 959
GluI	GCNGC	4 cut(s)	242, 341, 859, 864
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	3 cut(s)	159, 188, 826
HapII	CCGG	3 cut(s)	365, 443, 809
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	4 cut(s)	639, 853, 863, 960
Hin1I	GRCGYC	1 cut(s)	637
Hin1II	CATG	4 cut(s)	486, 544, 818, 913
Hin6I	GCGC	4 cut(s)	637, 851, 861, 958
HinP1I	GCGC	4 cut(s)	637, 851, 861, 958
HincII	GTYRAC	1 cut(s)	744
HindII	GTYRAC	1 cut(s)	744
HpaII	CCGG	3 cut(s)	365, 443, 809
HphI	GGTGA	2 cut(s)	26, 769
Hpy166II	GTNNAC	3 cut(s)	723, 744, 760
Hpy188I	TCNGA	7 cut(s)	130, 151, 211, 228, 333, 419, 838
Hpy188III	TCNNGA	4 cut(s)	398, 463, 541, 683
Hpy8I	GTNNAC	3 cut(s)	723, 744, 760
Hpy99I	CGWCG	2 cut(s)	328, 664
HpyAV	CCTTC	4 cut(s)	188, 383, 584, 907
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	3 cut(s)	42, 323, 353
HpyCH4V	TGCA	4 cut(s)	343, 700, 778, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 445
HpyF3I	CTNAG	5 cut(s)	116, 461, 674, 837, 894
HpySE526I	ACGT	3 cut(s)	42, 323, 353
Hsp92I	GRCGYC	1 cut(s)	637
Hsp92II	CATG	4 cut(s)	486, 544, 818, 913
HspAI	GCGC	4 cut(s)	637, 851, 861, 958
KasI	GGCGCC	1 cut(s)	636
Kzo9I	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	327, 845, 875
LweI	GCATC	4 cut(s)	102, 327, 337, 632
MaeI	CTAG	5 cut(s)	488, 555, 750, 936, 961
MaeII	ACGT	3 cut(s)	42, 323, 353
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	6 cut(s)	60, 132, 213, 681, 923, 940
MboI	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	6 cut(s)	217, 308, 454, 621, 687, 880
MluNI	TGGCCA	1 cut(s)	159
Mly113I	GGCGCC	1 cut(s)	637
MnlI	CCTC	9 cut(s)	144, 249, 372, 375, 481, 627, 816, 832, 885
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	2 cut(s)	393, 516
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	3 cut(s)	365, 443, 809
MspR9I	CCNGG	2 cut(s)	771, 809
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	771
MwoI	GCNNNNNNNGC	2 cut(s)	325, 445
NarI	GGCGCC	1 cut(s)	637
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
NlaIII	CATG	4 cut(s)	486, 544, 818, 913
NlaIV	GGNNCC	2 cut(s)	6, 638
NmuCI	GTSAC	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	862
NspI	RCATGY	1 cut(s)	818
PagI	TCATGA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	826
PciI	ACATGT	1 cut(s)	814
PctI	GAATGC	1 cut(s)	558
PdmI	GAANNNNTTC	2 cut(s)	393, 516
PflFI	GACNNNGTC	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	243, 342, 860, 865
PluTI	GGCGCC	1 cut(s)	640
PscI	ACATGT	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	2 cut(s)	6, 638
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	938
PsyI	GACNNNGTC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	4 cut(s)	242, 341, 859, 864
Sau3AI	GATC	6 cut(s)	58, 130, 211, 679, 921, 938
ScrFI	CCNGG	2 cut(s)	771, 809
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	7 cut(s)	45, 122, 326, 356, 843, 860, 877
SfaNI	GCATC	4 cut(s)	102, 327, 337, 632
SfcI	CTRYAG	1 cut(s)	341
SfoI	GGCGCC	1 cut(s)	638
Sse9I	AATT	6 cut(s)	217, 308, 454, 621, 687, 880
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	4 cut(s)	198, 242, 362, 869
SspDI	GGCGCC	1 cut(s)	636
SspMI	CTAG	5 cut(s)	488, 555, 750, 936, 961
StuI	AGGCCT	1 cut(s)	826
StyD4I	CCNGG	2 cut(s)	769, 807
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	3 cut(s)	45, 326, 356
TasI	AATT	6 cut(s)	217, 308, 454, 621, 687, 880
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	3 cut(s)	340, 858, 863
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	194, 236, 926
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	177
Tth111I	GACNNNGTC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	217, 880
XceI	RCATGY	1 cut(s)	818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	487
XmnI	GAANNNNTTC	2 cut(s)	393, 516
XspI	CTAG	5 cut(s)	488, 555, 750, 936, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.