Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Forward (+)

36913357 .. 36914608

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1256500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGCCAACTGGTGATGACCCAAATGAGCAATCTGCAAGTAAGAAAGAAGACAATGTGGAAGAAGCCAATGATCTCTTGGAAGAGTGTTGGTTTTTTGATAACTTGCTCAACAGGAAACAGAAGATGCTAAGGTGTTTTTCTGATCCTCACAGCAACTCATCAGGTTTTGGTCAAGGAATGTCAGTGAAGGCGAATAAGGCCACAGAAGGCAATGGATTTGCCGGTCCAAATTTGGTTCGGACGCCGTCGTTGCCTCTTCATATAGGGAGGCAGGAGACTGTTCAAGTGAAGCAAAGTGGTGGTAAGAGTAGTGTGAGCAAATTGACAAGGGAAACGTCGCATCAGAAAATGCTACAGACACCAACCCAACCGTCGGTTTGTATTGGGAGGAGGACAGAAGGAGTTCAGGATAGAGAAAGTGATATCAGAAGAAGTAGAGTAAATGGGCAACCGGTGCGCCACAATTTGCTCAGGACACCCTCCCTGCCACCATGTCGAGTAAAAGAAAAGAGAAACCAAGAAAGTGTTCCACAAAAACACAAGGGGCTCACGACACAATGTTCTGCCGTTCCAAGATTTAAACCCCCCAAAAACACAGTAGGGGAAAGCAACATGAGTAGTACAGATGGGATTAAGGAAATGAGACTCCGGTGCCCTAATCAACTGACGACGAGAAAGAGCCTAAGTGATCTTGAAATTGAAGAACTGCAAGGGTTCAAGGACTTGGGGTTCACATTTGACACGAAAGAGTTGAGCCCTAATGTGGTGAACATACTTCCCGGTCTGCAGGAAAAGAAGAGGAGTGAAGATTTGAACTCGATACATGTTAGGAGGCCTTATCTTTCCGAGGTGTGGTTGGCGCAAAGCTGCGCAGCCCCGCCACCTCCAAATTTGGGTGCAACTATGTCTACTGAAGATATAAAGGAACAAATCAAGTTCTGGGCTAGATCTGTGGCTTCTAATGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

325

Amino Acids

36.24

Weight (kDa)

9.22

Isoelectric Point (pI)

72.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	874
AccB1I	GGYRCC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	911
AciI	CCGC	1 cut(s)	881
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	232, 892
AcuI	CTGAAG	1 cut(s)	936
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	4 cut(s)	376, 766, 855, 896
AflIII	ACRYGT	1 cut(s)	826
AgeI	ACCGGT	1 cut(s)	454
AgsI	TTSAA	5 cut(s)	287, 698, 704, 721, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	1 cut(s)	870
AluI	AGCT	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	272, 640
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	201, 836
ApeKI	GCWGC	2 cut(s)	870, 875
ApoI	RAATTY	2 cut(s)	232, 892
AsiGI	ACCGGT	1 cut(s)	454
Asp700I	GAANNNNTTC	2 cut(s)	405, 528
AspLEI	GCGC	4 cut(s)	462, 865, 875, 972
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	2 cut(s)	26, 781
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	654
BanII	GRGCYC	2 cut(s)	552, 761
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	857, 887
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	2 cut(s)	232, 554
BcnI	CCSGG	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	272, 640
BfaI	CTAG	2 cut(s)	948, 973
BfmI	CTRYAG	2 cut(s)	356, 788
BglII	AGATCT	1 cut(s)	950
BisI	GCNGC	2 cut(s)	871, 876
BlsI	GCNGC	2 cut(s)	872, 877
Bme1390I	CCNGG	1 cut(s)	783
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	6, 656
BmrFI	CCNGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	117, 352
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	2 cut(s)	131, 473
BpuMI	CCSGG	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	849
BsaWI	WCCGGW	2 cut(s)	454, 651
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 766, 855, 896
Bse118I	RCCGGY	2 cut(s)	224, 454
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	849
BseLI	CCNNNNNNNGG	4 cut(s)	376, 766, 855, 896
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	406, 817
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	2 cut(s)	857, 887
BshFI	GGCC	2 cut(s)	203, 838
BshNI	GGYRCC	1 cut(s)	654
BshTI	ACCGGT	1 cut(s)	454
BsiSI	CCGG	4 cut(s)	225, 455, 652, 783
BslI	CCNNNNNNNGG	4 cut(s)	376, 766, 855, 896
BsmAI	GTCTC	2 cut(s)	272, 640
BsnI	GGCC	2 cut(s)	203, 838
Bsp1286I	GDGCHC	3 cut(s)	552, 659, 761
Bsp143I	GATC	4 cut(s)	73, 145, 691, 950
BspACI	CCGC	1 cut(s)	881
BspANI	GGCC	2 cut(s)	203, 838
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	6, 656
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	654
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	224, 454
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	224, 454
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	4 cut(s)	73, 145, 691, 950
BssNI	GRCGYC	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	283, 375, 601
Bst6I	CTCTTC	3 cut(s)	78, 264, 794
BstACI	GRCGYC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstDEI	CTNAG	3 cut(s)	131, 473, 686
BstHHI	GCGC	4 cut(s)	462, 865, 875, 972
BstKTI	GATC	4 cut(s)	76, 148, 694, 953
BstMAI	GTCTC	2 cut(s)	272, 640
BstMBI	GATC	4 cut(s)	73, 145, 691, 950
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 253, 457
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	2 cut(s)	356, 788
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	857, 887
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	203, 838
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	4 cut(s)	462, 865, 875, 972
Cfr10I	RCCGGY	2 cut(s)	224, 454
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	624
CspAI	ACCGGT	1 cut(s)	454
CviAII	CATG	3 cut(s)	495, 616, 827
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	131, 473, 686
DpnI	GATC	4 cut(s)	75, 147, 693, 952
DpnII	GATC	4 cut(s)	73, 145, 691, 950
DraI	TTTAAA	1 cut(s)	583
Eam1104I	CTCTTC	3 cut(s)	78, 264, 794
EarI	CTCTTC	3 cut(s)	78, 264, 794
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	2 cut(s)	552, 761
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	2 cut(s)	552, 761
FaeI	CATG	3 cut(s)	498, 619, 830
FaiI	YATR	8 cut(s)	264, 266, 496, 617, 776, 828, 908, 923
FatI	CATG	3 cut(s)	494, 615, 826
FauI	CCCGC	1 cut(s)	888
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	2 cut(s)	871, 876
FriOI	GRGCYC	2 cut(s)	552, 761
Fsp4HI	GCNGC	2 cut(s)	871, 876
FspBI	CTAG	2 cut(s)	948, 973
FspI	TGCGCA	1 cut(s)	874
GlaI	GCGC	4 cut(s)	461, 864, 874, 971
GluI	GCNGC	2 cut(s)	871, 876
HaeIII	GGCC	2 cut(s)	203, 838
HapII	CCGG	4 cut(s)	225, 455, 652, 783
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	4 cut(s)	462, 865, 875, 972
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	498, 619, 830
Hin6I	GCGC	4 cut(s)	460, 863, 873, 970
HinP1I	GCGC	4 cut(s)	460, 863, 873, 970
HinfI	GANTC	1 cut(s)	648
HpaII	CCGG	4 cut(s)	225, 455, 652, 783
HphI	GGTGA	2 cut(s)	26, 781
Hpy166II	GTNNAC	3 cut(s)	735, 772, 912
Hpy188I	TCNGA	5 cut(s)	145, 243, 348, 431, 850
Hpy188III	TCNNGA	4 cut(s)	410, 475, 553, 695
Hpy8I	GTNNAC	3 cut(s)	735, 772, 912
Hpy99I	CGWCG	4 cut(s)	253, 343, 379, 676
HpyAV	CCTTC	3 cut(s)	184, 203, 395
HpyCH4III	ACNGT	3 cut(s)	283, 375, 601
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	38, 712, 790, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 253, 457
HpyF3I	CTNAG	3 cut(s)	131, 473, 686
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	498, 619, 830
HspAI	GCGC	4 cut(s)	460, 863, 873, 970
Kzo9I	GATC	4 cut(s)	73, 145, 691, 950
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	857, 887
LweI	GCATC	2 cut(s)	117, 352
MaeI	CTAG	2 cut(s)	948, 973
MaeII	ACGT	1 cut(s)	338
MalI	GATC	4 cut(s)	75, 147, 693, 952
MboI	GATC	4 cut(s)	73, 145, 691, 950
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	3 cut(s)	552, 659, 761
MluCI	AATT	5 cut(s)	232, 323, 466, 699, 892
MlyI	GAGTC	1 cut(s)	642
MroXI	GAANNNNTTC	2 cut(s)	405, 528
MseI	TTAA	2 cut(s)	582, 636
MspI	CCGG	4 cut(s)	225, 455, 652, 783
MspR9I	CCNGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	3 cut(s)	200, 253, 457
NciI	CCSGG	1 cut(s)	783
NdeII	GATC	4 cut(s)	73, 145, 691, 950
NlaIII	CATG	3 cut(s)	498, 619, 830
NlaIV	GGNNCC	2 cut(s)	6, 656
NsbI	TGCGCA	1 cut(s)	874
NspI	RCATGY	1 cut(s)	830
PceI	AGGCCT	1 cut(s)	838
PciI	ACATGT	1 cut(s)	826
PdmI	GAANNNNTTC	2 cut(s)	405, 528
PflFI	GACNNNGTC	1 cut(s)	247
PinAI	ACCGGT	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	872, 877
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PscI	ACATGT	1 cut(s)	826
PspN4I	GGNNCC	2 cut(s)	6, 656
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	792
PsuI	RGATCY	1 cut(s)	950
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	582, 636
SatI	GCNGC	2 cut(s)	871, 876
Sau3AI	GATC	4 cut(s)	73, 145, 691, 950
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	642
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	3 cut(s)	552, 659, 761
SetI	ASST	6 cut(s)	137, 169, 341, 855, 872, 889
SfaNI	GCATC	2 cut(s)	117, 352
SfcI	CTRYAG	2 cut(s)	356, 788
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	5 cut(s)	232, 323, 466, 699, 892
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	1 cut(s)	881
SspMI	CTAG	2 cut(s)	948, 973
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	781
TaaI	ACNGT	3 cut(s)	283, 375, 601
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	499, 821
TasI	AATT	5 cut(s)	232, 323, 466, 699, 892
TatI	WGTACW	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	582, 636
Tru9I	TTAA	2 cut(s)	582, 636
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	2 cut(s)	870, 875
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	192
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	232, 892
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	911
XmnI	GAANNNNTTC	2 cut(s)	405, 528
XspI	CTAG	2 cut(s)	948, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.