FvH4_3g19190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007116
Physical Location & Seq
Reverse (-)
12362193 .. 12363830
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19190.t1

Sequence Viewer

Length: 924 bp
ATGGAGCATGTTGATGATGACCCTTTTGAGGCATCCTCATGTAGGAACCAGAAAGTAGAAGCCAACGATCTTTTGGAAGAGTGTTGGTTCTTTGATAACTTGCTCATCAGAAAGGAAAGGATGTTGAGGTGTTATTCTGATCCTTGTTGCCCTTCGCCATCGAGCTTTGGTCAGGAAATGCTGGTGAAGAACTCAGAGTCCAAGAACTCCTTGGTTCGAACACCGTCTTTGCCGCTTCATGTAGGGAGAGAAGAGAAGGTTGAGCAAGCAGTGAAGCAGAGTACTCCGAAGAAGAGTTTGAGCAAATTGACTCGGCAGACATCACATCAGAAAATGCTGCAGACACCAACCAAGTCACCGCCTTGTGTAAGCAGGAAAGAAGAAAATAGAGAGAAGAGTGACAGTAGAAGAAGCAAATCTAATGGGCAACCGGTGCAGCGCAGCTTACTAAGGACACCATCATTGCCGCCGTGTTTAGGGAGGGAGGAGAAAAACCAAGAGAGTGTTCCGCCGCGACATAAGGGCATGACACAATGTTCTAGCATTCCAAGATATCGACCTCCTGTTAGAAGCACAAAAGGAGAAAATGCAGATGTTAGCAAGGAAATAAGACGCAAATTACTTTCAAGAAAGAGCCTGAGCGACCTTGAAATTGAAGAGGTGCAAGGGTTCAAGGACTTGGGGTTCACATTTGACAAGAAAGACATAGCTCCAAGTGTGGTTAGCATACTTCCTGGATTGCAAGAAAAGAAGCGCAATGAGGAATTGAACCTGGATATGGTACGTAGGCCTTATCTTTCGGAAGCTTGGCTGGTGCAAAGCTGTGCCCCGCCACCTCCAAACTTGGGTGCAGGTAGGTCTGCTGAAGACATGAAGGCACAGATCAAGTTCTGGGCTAGATCTGTGGCATCTAATGTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

308

Amino Acids

34.9

Weight (kDa)

9.37

Isoelectric Point (pI)

70.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 842
AccII CGCG 1 cut(s) 514
AciI CCGC 6 cut(s) 233, 359, 467, 509, 512, 830
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 2 cut(s) 283, 783
AfiI CCNNNNNNNGG 5 cut(s) 28, 42, 476, 778, 845
AgeI ACCGGT 1 cut(s) 430
AgsI TTSAA 5 cut(s) 627, 650, 656, 673, 769
AjnI CCWGG 2 cut(s) 733, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AloI GAACNNNNNNTCC 4 cut(s) 182, 214, 668, 700
AluBI AGCT 5 cut(s) 165, 444, 710, 806, 822
AluI AGCT 5 cut(s) 165, 444, 710, 806, 822
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 3 cut(s) 337, 436, 441
AsiGI ACCGGT 1 cut(s) 430
AspLEI GCGC 3 cut(s) 441, 756, 921
AsuHPI GGTGA 2 cut(s) 196, 348
AsuII TTCGAA 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 873
BbvI GCAGC 3 cut(s) 324, 448, 453
BccI CCATC 2 cut(s) 166, 466
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 735, 773
BfaI CTAG 3 cut(s) 540, 897, 922
BfmI CTRYAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 842
BglII AGATCT 1 cut(s) 899
BisI GCNGC 6 cut(s) 233, 338, 437, 442, 467, 512
BlsI GCNGC 6 cut(s) 234, 339, 438, 443, 468, 513
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 735, 773
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 735, 773
BmsI GCATC 2 cut(s) 41, 917
BpiI GAAGAC 1 cut(s) 873
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bpu10I CCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 42, 476, 778, 845
Bse118I RCCGGY 1 cut(s) 430
Bse3DI GCAATG 2 cut(s) 461, 763
BseBI CCWGG 2 cut(s) 735, 773
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 32, 126
BseLI CCNNNNNNNGG 5 cut(s) 28, 42, 476, 778, 845
BseMI GCAATG 2 cut(s) 461, 763
BseMII CTCAG 2 cut(s) 207, 629
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 3 cut(s) 324, 448, 453
BsgI GTGCAG 2 cut(s) 455, 870
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 1 cut(s) 790
BshTI ACCGGT 1 cut(s) 430
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 5 cut(s) 28, 42, 476, 778, 845
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 790
Bsp119I TTCGAA 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 4 cut(s) 67, 139, 882, 899
BspACI CCGC 6 cut(s) 233, 359, 467, 509, 512, 830
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 2 cut(s) 206, 630
BspFNI CGCG 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 342
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 461, 763
BsrFI RCCGGY 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 4 cut(s) 67, 139, 882, 899
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 735, 773
Bst4CI ACNGT 2 cut(s) 225, 404
Bst6I CTCTTC 5 cut(s) 72, 246, 287, 389, 651
BstAPI GCANNNNNTGC 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 785
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 193, 449, 638
BstENI CCTNNNNNAGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 32, 126
BstFNI CGCG 1 cut(s) 514
BstHHI GCGC 3 cut(s) 441, 756, 921
BstKTI GATC 4 cut(s) 70, 142, 885, 902
BstMBI GATC 4 cut(s) 67, 139, 882, 899
BstMWI GCNNNNNNNGC 1 cut(s) 433
BstNI CCWGG 2 cut(s) 735, 773
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 733, 771
BstSFI CTRYAG 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 829
BstSNI TACGTA 1 cut(s) 785
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 3 cut(s) 324, 448, 453
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 1 cut(s) 899
BstYI RGATCY 1 cut(s) 899
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 2 cut(s) 32, 126
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 3 cut(s) 441, 756, 921
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 282, 782
CspAI ACCGGT 1 cut(s) 430
CviAII CATG 5 cut(s) 8, 39, 239, 526, 871
CviQI GTAC 2 cut(s) 282, 782
DdeI CTNAG 3 cut(s) 193, 449, 638
DpnI GATC 4 cut(s) 69, 141, 884, 901
DpnII GATC 4 cut(s) 67, 139, 882, 899
Eam1104I CTCTTC 5 cut(s) 72, 246, 287, 389, 651
EarI CTCTTC 5 cut(s) 72, 246, 287, 389, 651
EciI GGCGGA 1 cut(s) 498
Eco105I TACGTA 1 cut(s) 785
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 790
Eco32I GATATC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 885
EcoNI CCTNNNNNAGG 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 733, 771
EcoRV GATATC 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 5 cut(s) 11, 42, 242, 529, 874
FaiI YATR 9 cut(s) 9, 40, 240, 519, 527, 707, 728, 779, 872
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 5 cut(s) 7, 38, 238, 525, 870
FauI CCCGC 1 cut(s) 837
Fnu4HI GCNGC 6 cut(s) 233, 338, 437, 442, 467, 512
FokI GGATG 2 cut(s) 19, 133
Fsp4HI GCNGC 6 cut(s) 233, 338, 437, 442, 467, 512
FspBI CTAG 3 cut(s) 540, 897, 922
GlaI GCGC 3 cut(s) 440, 755, 920
GluI GCNGC 6 cut(s) 233, 338, 437, 442, 467, 512
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 621
HhaI GCGC 3 cut(s) 441, 756, 921
Hin1II CATG 5 cut(s) 11, 42, 242, 529, 874
Hin6I GCGC 3 cut(s) 439, 754, 919
HinP1I GCGC 3 cut(s) 439, 754, 919
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 2 cut(s) 197, 310
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 196, 348
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 6 cut(s) 110, 139, 196, 288, 330, 802
Hpy188III TCNNGA 2 cut(s) 173, 627
Hpy8I GTNNAC 1 cut(s) 687
HpyAV CCTTC 3 cut(s) 162, 250, 868
HpyCH4III ACNGT 2 cut(s) 225, 404
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 7 cut(s) 340, 436, 590, 664, 742, 817, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 433
HpyF3I CTNAG 3 cut(s) 193, 449, 638
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 5 cut(s) 11, 42, 242, 529, 874
HspAI GCGC 3 cut(s) 439, 754, 919
Kzo9I GATC 4 cut(s) 67, 139, 882, 899
LmnI GCTCC 2 cut(s) 4, 715
Lsp1109I GCAGC 3 cut(s) 324, 448, 453
LweI GCATC 2 cut(s) 41, 917
MaeI CTAG 3 cut(s) 540, 897, 922
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 2 cut(s) 354, 398
MalI GATC 4 cut(s) 69, 141, 884, 901
MboI GATC 4 cut(s) 67, 139, 882, 899
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 1 cut(s) 829
MluCI AATT 4 cut(s) 305, 617, 651, 764
MlyI GAGTC 2 cut(s) 206, 304
MnlI CCTC 9 cut(s) 22, 46, 120, 474, 478, 570, 652, 754, 846
MslI CAYNNNNRTG 2 cut(s) 12, 37
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 735, 773
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 2 cut(s) 735, 773
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 1 cut(s) 433
NdeII GATC 4 cut(s) 67, 139, 882, 899
NlaIII CATG 5 cut(s) 11, 42, 242, 529, 874
NlaIV GGNNCC 1 cut(s) 47
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 354, 398
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 1 cut(s) 217
PceI AGGCCT 1 cut(s) 790
PctI GAATGC 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 733
PinAI ACCGGT 1 cut(s) 430
PkrI GCNGC 6 cut(s) 234, 339, 438, 443, 468, 513
PleI GAGTC 2 cut(s) 205, 304
PpsI GAGTC 2 cut(s) 205, 304
Ppu21I YACGTR 1 cut(s) 785
Psp6I CCWGG 2 cut(s) 733, 771
PspGI CCWGG 2 cut(s) 733, 771
PspN4I GGNNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 899
RsaI GTAC 2 cut(s) 283, 783
RsaNI GTAC 2 cut(s) 282, 782
RseI CAYNNNNRTG 2 cut(s) 12, 37
SatI GCNGC 6 cut(s) 233, 338, 437, 442, 467, 512
Sau3AI GATC 4 cut(s) 67, 139, 882, 899
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 2 cut(s) 206, 304
ScrFI CCNGG 2 cut(s) 735, 773
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 2 cut(s) 41, 917
SfcI CTRYAG 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 217
SmiMI CAYNNNNRTG 2 cut(s) 12, 37
SnaBI TACGTA 1 cut(s) 785
Sse9I AATT 4 cut(s) 305, 617, 651, 764
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 6 cut(s) 233, 359, 467, 509, 512, 830
SspMI CTAG 3 cut(s) 540, 897, 922
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 2 cut(s) 733, 771
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 225, 404
TaiI ACGT 1 cut(s) 787
TaqI TCGA 3 cut(s) 161, 217, 556
TasI AATT 4 cut(s) 305, 617, 651, 764
TatI WGTACW 1 cut(s) 281
TauI GCSGC 3 cut(s) 235, 469, 514
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 354, 398
TseI GCWGC 3 cut(s) 337, 436, 441
Tsp45I GTSAC 2 cut(s) 354, 398
TspDTI ATGAA 2 cut(s) 227, 887
TspRI CASTG 1 cut(s) 276
XagI CCTNNNNNAGG 1 cut(s) 40
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 208
XspI CTAG 3 cut(s) 540, 897, 922
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.