Rroxscaffold_1G00048190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007116
Physical Location & Seq
Forward (+)
68178471 .. 68179325
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048190.1

Sequence Viewer

Length: 633 bp
ATGAGCAAATTGACTCGGCAGACATCACATCAGAAAGTGCTGCAGGCACCAACCAAATCACCACCTTGTGTAAGCACGAAGGAAGAAGTTCAAGATAGAGAGAGGAGTGATAGTAGAAGAAGCAAATCAAATGGGCAATCGGTGCAGCGCAGTTTGCTAAGGACACCATCATTGCCACCGTGTTTAGGGAGGAGGAGAAAAACCAAGACTCTGTTCCACTGCGACCCTAAGGGCATGACACAATGTTCTAGCATTCCAAGATATCGACCTCCAGTTAGAAGCACAGAAGGGGAAAATGCAGATGTTAGCAAGGAAATGAGACTCAATTTACTTTCTAGAAAGAGCCTAAGCGACCTTGAAATTGAAGAAGTGCAAGGGTTCAAGGACTTGGGATTCACCTTTGACAAGAAAGACATAGCCCCTAGTGTGGTTAGCATACTTCCTGGTTTGCAAGAAAAGAAGCGCAATGAGGATTTTAACCCGGATATGGTACGTCGGCCTTATCTTTCGGAGGCATGGATGGTGCAAAGCTGTGCTCCTCCACCTCCAAATTTGGGTGTAAGTAGGTCTGCTGAAGACATGAAGGCACAAATCAAGTTCTGGGCTAGAGCTGTGGCATCTAATGTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

210

Amino Acids

23.77

Weight (kDa)

9.9

Isoelectric Point (pI)

74.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 594
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 4 cut(s) 185, 427, 487, 554
AgsI TTSAA 4 cut(s) 92, 359, 365, 382
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 531, 611
AluI AGCT 2 cut(s) 531, 611
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 313
AoxI GGCC 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 40, 145
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 3 cut(s) 150, 465, 630
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 51, 388
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 27, 157
BccI CCATC 2 cut(s) 175, 514
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 5 cut(s) 249, 336, 423, 606, 631
BfmI CTRYAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 41, 146
BlsI GCNGC 2 cut(s) 42, 147
Bme1390I CCNGG 2 cut(s) 444, 482
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 2 cut(s) 444, 482
BmsI GCATC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 2 cut(s) 158, 347
BpuMI CCSGG 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 427, 487, 554
Bse1I ACTGG 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 2 cut(s) 170, 472
BseBI CCWGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 4 cut(s) 185, 427, 487, 554
BseMI GCAATG 2 cut(s) 170, 472
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 4 cut(s) 118, 205, 208, 528
BseXI GCAGC 2 cut(s) 27, 157
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 499
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 1 cut(s) 482
BslI CCNNNNNNNGG 4 cut(s) 185, 427, 487, 554
BsmAI GTCTC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 538
BspANI GGCC 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 170, 472
BsrI ACTGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 158, 228, 347
BstF5I GGATG 1 cut(s) 525
BstHHI GCGC 3 cut(s) 150, 465, 630
BstMAI GTCTC 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 142, 154
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 442, 480
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 27, 157
BstV2I GAAGAC 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 3 cut(s) 150, 465, 630
Csp6I GTAC 1 cut(s) 491
CviAII CATG 3 cut(s) 235, 516, 580
CviJI RGCY 6 cut(s) 345, 419, 499, 531, 605, 611
CviKI_1 RGCY 6 cut(s) 345, 419, 499, 531, 605, 611
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 3 cut(s) 158, 228, 347
DraIII CACNNNGTG 1 cut(s) 68
Eco32I GATATC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 594
Eco81I CCTNAGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 263
FaeI CATG 3 cut(s) 238, 519, 583
FaiI YATR 6 cut(s) 236, 416, 437, 488, 517, 581
FatI CATG 3 cut(s) 234, 515, 579
Fnu4HI GCNGC 2 cut(s) 41, 146
FokI GGATG 1 cut(s) 532
Fsp4HI GCNGC 2 cut(s) 41, 146
FspBI CTAG 5 cut(s) 249, 336, 423, 606, 631
GlaI GCGC 3 cut(s) 149, 464, 629
GluI GCNGC 2 cut(s) 41, 146
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 499
HapII CCGG 1 cut(s) 482
HhaI GCGC 3 cut(s) 150, 465, 630
Hin1II CATG 3 cut(s) 238, 519, 583
Hin6I GCGC 3 cut(s) 148, 463, 628
HinP1I GCGC 3 cut(s) 148, 463, 628
HinfI GANTC 4 cut(s) 13, 208, 321, 393
HpaII CCGG 1 cut(s) 482
HphI GGTGA 2 cut(s) 51, 388
Hpy188I TCNGA 2 cut(s) 33, 511
Hpy188III TCNNGA 2 cut(s) 92, 336
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 3 cut(s) 73, 281, 577
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 6 cut(s) 43, 145, 299, 373, 451, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 154
HpyF3I CTNAG 3 cut(s) 158, 228, 347
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 3 cut(s) 238, 519, 583
HspAI GCGC 3 cut(s) 148, 463, 628
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 6 cut(s) 29, 285, 429, 456, 495, 586
Lsp1109I GCAGC 2 cut(s) 27, 157
LweI GCATC 1 cut(s) 626
MaeI CTAG 5 cut(s) 249, 336, 423, 606, 631
MaeII ACGT 1 cut(s) 493
MboII GAAGA 4 cut(s) 95, 129, 377, 587
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 4 cut(s) 8, 325, 360, 550
MlyI GAGTC 3 cut(s) 7, 202, 315
MnlI CCTC 8 cut(s) 96, 183, 186, 279, 463, 505, 549, 555
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 477
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 444, 482
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 142, 154
NciI CCSGG 1 cut(s) 482
NlaIII CATG 3 cut(s) 238, 519, 583
NlaIV GGNNCC 1 cut(s) 48
PctI GAATGC 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 393
PkrI GCNGC 2 cut(s) 42, 147
PleI GAGTC 3 cut(s) 7, 202, 315
PpsI GAGTC 3 cut(s) 7, 202, 315
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 45
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 41, 146
SchI GAGTC 3 cut(s) 7, 202, 315
ScrFI CCNGG 2 cut(s) 444, 482
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 67, 271, 357, 401, 496, 533, 547, 569, 613
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 8, 325, 360, 550
SspMI CTAG 5 cut(s) 249, 336, 423, 606, 631
StyD4I CCNGG 2 cut(s) 442, 480
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 265
TasI AATT 4 cut(s) 8, 325, 360, 550
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 224
TseI GCWGC 2 cut(s) 40, 145
TspDTI ATGAA 1 cut(s) 596
TspRI CASTG 1 cut(s) 224
XapI RAATTY 1 cut(s) 550
XbaI TCTAGA 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 5 cut(s) 249, 336, 423, 606, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.