Rh5BG228900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007116
Physical Location & Seq
Reverse (-)
26852204 .. 26852518
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG228900.1

Sequence Viewer

Length: 315 bp
ATGTGTTTGAAAGAATTGCACAATCCACTTGTACGATTTATGTGGCGCCGTGTTTTCGTCTTCCGCGTGTCTTCTTCTCTTTTCTCCACTGAACGACCACTGGGGGGAGAGACATCACATCAGAAAGTGCTGCAGACACCACTCAAATCATCACCTTCTGTAAGCAAAAAAGAAGAAGTTCAAGATAGAGAGAAGAGTGATAGTAGAATAAGCAAATCAAATAGGCAATTAGTGCAACGTAGTTTGCTAAGGACACCATCATTGCCACCATGTTTAGGGATGCCAACCTCAGCTCTGTTTGCCCAAAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

104

Amino Acids

11.87

Weight (kDa)

10.67

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 104, 275
AgsI TTSAA 2 cut(s) 10, 182
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 45
BbsI GAAGAC 2 cut(s) 52, 63
BbvCI CCTCAGC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 49
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 52, 63
Bpu10I CCTNAGC 2 cut(s) 248, 289
BsaHI GRCGYC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 275
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 260
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 104, 275
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 104, 275
BsmAI GTCTC 1 cut(s) 104
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 302
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 248, 289
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 232, 299
BstSFI CTRYAG 1 cut(s) 131
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 2 cut(s) 52, 63
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 87, 98
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 270
CviJI RGCY 1 cut(s) 293
CviKI_1 RGCY 1 cut(s) 293
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 248, 289
DinI GGCGCC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 47
EheI GGCGCC 1 cut(s) 47
FaeI CATG 1 cut(s) 273
FaiI YATR 2 cut(s) 41, 271
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 131
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 49
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 273
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HphI GGTGA 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 19, 133, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 299
HpyF3I CTNAG 2 cut(s) 248, 289
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 273
HspAI GCGC 1 cut(s) 46
KasI GGCGCC 1 cut(s) 45
LpnPI CCDG 1 cut(s) 86
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 270
MaeII ACGT 1 cut(s) 238
MboII GAAGA 5 cut(s) 52, 63, 66, 185, 205
MluCI AATT 2 cut(s) 14, 227
Mly113I GGCGCC 1 cut(s) 46
MnlI CCTC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 313
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 232, 299
NarI GGCGCC 1 cut(s) 46
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 132
PluTI GGCGCC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 135
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 1 cut(s) 131
SetI ASST 4 cut(s) 157, 241, 290, 295
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 131
SfoI GGCGCC 1 cut(s) 47
SgeI CNNG 7 cut(s) 41, 62, 77, 79, 113, 194, 282
Sse9I AATT 2 cut(s) 14, 227
SsiI CCGC 1 cut(s) 64
SspDI GGCGCC 1 cut(s) 45
TaiI ACGT 1 cut(s) 241
TasI AATT 2 cut(s) 14, 227
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 2 cut(s) 94, 105
TseI GCWGC 1 cut(s) 130
TspRI CASTG 2 cut(s) 94, 105
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.